Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0014822

Physical Location & Seq

Genomic Coordinates Forward (+)

13039001 .. 13040739

Gene Structure 1739 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g10240.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGGGTTGGATGATGATTCCCTGTTCTGGTAATTCTAACTGCAAAGCAAAAACCAAGAAGAAAAGGAAGAACAAGATTGAGTTGCAGGATAAGCCACTTGATCGATCAAACCCACTTCAGATTAGTTTTTCAAAGACTAGTTCCATTTTGAGTGTCAAGGAGGATCCAAAAGATGGAGGGTCTGACCACATTGCAGCACAGACTTTTGTATTCCGTGAATTGGCAGCTGCAACTAGAAATTTCAGGTCAGAATGTGTTTTGGGTGAAGGTGGATTTGGTCGAGTATACAAAGGACGTTTGGAAAGTACAAATCAGGTAGTAGCTATCAAACAACTTGATCGTGATGGATTGCAAGGGAACAGGGAATTCCTTGTTGAAGTGTTGATGTTGAGTCTTCTTCACCACCCCAATCTTGTTAATCTTATTGGTTATTGTGCGGATGGATCGATCAAAGGCTTCTGGTTTATGAATATATGCCCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002218 GO:0002221 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0002757 GO:0002758 GO:0002764 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009814 GO:0009816 GO:0009966 GO:0009967 GO:0009987 GO:0010646 GO:0010647 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023051 GO:0023052 GO:0023056 GO:0031347 GO:0031349 GO:0036211 GO:0038023 GO:0042742 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045087 GO:0045088 GO:0045089 GO:0046777 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0080134 GO:0098542 GO:0140096 GO:1900457 GO:1900459 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

161

Amino Acids

17.85

Weight (kDa)

9.3

Isoelectric Point (pI)

38.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014822)

Species	Orthologous Gene IDs
malus_domestica	MD07G1169000.v1.1
pyrus_communis	pycom04g10240 pycom04g10280 pycom07g17520
rosa_chinensis	RchiOBHm_Chr3g0494801
rosa_laevigata	RLG00000033638
rosa_roxburghii	Rroxscaffold_7G00212040
rosa_rugosa	Rorug02G0020600 Rorug04G0064300 Rorug04G0225700 Rorug05G0033200 Rorug05G0076800 Rorug05G0322500
rosa_samantha	Rh1CG303900 Rh2DG229100 Rh3BG288000 Rh6BG143800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	173
AccI	GTMKAC	1 cut(s)	285
AciI	CCGC	1 cut(s)	437
AclWI	GGATC	3 cut(s)	158, 171, 451
AcsI	RAATTY	2 cut(s)	238, 365
AcuI	CTGAAG	1 cut(s)	101
AfaI	GTAC	1 cut(s)	307
AfiI	CCNNNNNNNGG	3 cut(s)	26, 173, 220
AgsI	TTSAA	2 cut(s)	132, 377
AhlI	ACTAGT	1 cut(s)	137
AjuI	GAANNNNNNNTTGG	2 cut(s)	258, 290
AluBI	AGCT	2 cut(s)	227, 323
AluI	AGCT	2 cut(s)	227, 323
AlwI	GGATC	3 cut(s)	158, 171, 451
ApeKI	GCWGC	3 cut(s)	194, 224, 227
ApoI	RAATTY	2 cut(s)	238, 365
AsuHPI	GGTGA	2 cut(s)	275, 392
BamHI	GGATCC	1 cut(s)	163
BbsI	GAAGAC	1 cut(s)	386
BbvI	GCAGC	3 cut(s)	206, 214, 236
BccI	CCATC	3 cut(s)	167, 338, 434
BcuI	ACTAGT	1 cut(s)	137
BfaI	CTAG	3 cut(s)	138, 234, 481
BisI	GCNGC	3 cut(s)	195, 225, 228
BlsI	GCNGC	3 cut(s)	196, 226, 229
BmiI	GGNNCC	1 cut(s)	165
BpiI	GAAGAC	1 cut(s)	386
Bsa29I	ATCGAT	2 cut(s)	103, 446
Bsc4I	CCNNNNNNNGG	3 cut(s)	26, 173, 220
Bse3DI	GCAATG	1 cut(s)	189
BseCI	ATCGAT	2 cut(s)	103, 446
BseGI	GGATG	2 cut(s)	15, 445
BseLI	CCNNNNNNNGG	3 cut(s)	26, 173, 220
BseMI	GCAATG	1 cut(s)	189
BseXI	GCAGC	3 cut(s)	206, 214, 236
BshVI	ATCGAT	2 cut(s)	103, 446
BslI	CCNNNNNNNGG	3 cut(s)	26, 173, 220
Bsp143I	GATC	6 cut(s)	100, 104, 163, 337, 443, 447
BspACI	CCGC	1 cut(s)	437
BspDI	ATCGAT	2 cut(s)	103, 446
BspLI	GGNNCC	1 cut(s)	165
BspPI	GGATC	3 cut(s)	158, 171, 451
BsrDI	GCAATG	1 cut(s)	189
BssMI	GATC	6 cut(s)	100, 104, 163, 337, 443, 447
BssNAI	GTATAC	1 cut(s)	286
Bst1107I	GTATAC	1 cut(s)	286
BstF5I	GGATG	2 cut(s)	15, 445
BstKTI	GATC	6 cut(s)	103, 107, 166, 340, 446, 450
BstMBI	GATC	6 cut(s)	100, 104, 163, 337, 443, 447
BstMWI	GCNNNNNNNGC	1 cut(s)	91
BstV1I	GCAGC	3 cut(s)	206, 214, 236
BstV2I	GAAGAC	1 cut(s)	386
BstX2I	RGATCY	1 cut(s)	163
BstYI	RGATCY	1 cut(s)	163
BstZ17I	GTATAC	1 cut(s)	286
Bsu15I	ATCGAT	2 cut(s)	103, 446
BsuTUI	ATCGAT	2 cut(s)	103, 446
BtsCI	GGATG	2 cut(s)	15, 445
ClaI	ATCGAT	2 cut(s)	103, 446
Csp6I	GTAC	1 cut(s)	306
CviJI	RGCY	4 cut(s)	94, 227, 323, 456
CviKI_1	RGCY	4 cut(s)	94, 227, 323, 456
CviQI	GTAC	1 cut(s)	306
DpnI	GATC	6 cut(s)	102, 106, 165, 339, 445, 449
DpnII	GATC	6 cut(s)	100, 104, 163, 337, 443, 447
Eco57I	CTGAAG	1 cut(s)	101
EcoRI	GAATTC	1 cut(s)	365
FaiI	YATR	4 cut(s)	286, 467, 473, 475
FblI	GTMKAC	1 cut(s)	285
Fnu4HI	GCNGC	3 cut(s)	195, 225, 228
FokI	GGATG	2 cut(s)	22, 452
Fsp4HI	GCNGC	3 cut(s)	195, 225, 228
FspBI	CTAG	3 cut(s)	138, 234, 481
GluI	GCNGC	3 cut(s)	195, 225, 228
HinfI	GANTC	2 cut(s)	16, 391
HphI	GGTGA	2 cut(s)	275, 392
Hpy166II	GTNNAC	1 cut(s)	286
Hpy188I	TCNGA	3 cut(s)	120, 184, 250
Hpy188III	TCNNGA	1 cut(s)	341
Hpy8I	GTNNAC	1 cut(s)	286
HpyAV	CCTTC	1 cut(s)	260
HpyCH4IV	ACGT	1 cut(s)	295
HpyCH4V	TGCA	5 cut(s)	42, 85, 194, 230, 352
HpyF10VI	GCNNNNNNNGC	1 cut(s)	91
HpySE526I	ACGT	1 cut(s)	295
Kzo9I	GATC	6 cut(s)	100, 104, 163, 337, 443, 447
LpnPI	CCDG	7 cut(s)	12, 34, 71, 229, 299, 346, 445
Lsp1109I	GCAGC	3 cut(s)	206, 214, 236
MaeI	CTAG	3 cut(s)	138, 234, 481
MaeII	ACGT	1 cut(s)	295
MalI	GATC	6 cut(s)	102, 106, 165, 339, 445, 449
MboI	GATC	6 cut(s)	100, 104, 163, 337, 443, 447
MboII	GAAGA	4 cut(s)	70, 79, 386, 389
MflI	RGATCY	1 cut(s)	163
MluCI	AATT	4 cut(s)	31, 218, 238, 365
MlyI	GAGTC	1 cut(s)	400
MnlI	CCTC	2 cut(s)	154, 170
MseI	TTAA	1 cut(s)	417
MspA1I	CMGCKG	1 cut(s)	227
MwoI	GCNNNNNNNGC	1 cut(s)	91
NdeII	GATC	6 cut(s)	100, 104, 163, 337, 443, 447
NlaIV	GGNNCC	1 cut(s)	165
PfeI	GAWTC	1 cut(s)	16
PflMI	CCANNNNNTGG	1 cut(s)	173
PkrI	GCNGC	3 cut(s)	196, 226, 229
PleI	GAGTC	1 cut(s)	399
PpsI	GAGTC	1 cut(s)	399
PspN4I	GGNNCC	1 cut(s)	165
PsuI	RGATCY	1 cut(s)	163
PvuII	CAGCTG	1 cut(s)	227
RsaI	GTAC	1 cut(s)	307
RsaNI	GTAC	1 cut(s)	306
SaqAI	TTAA	1 cut(s)	417
SatI	GCNGC	3 cut(s)	195, 225, 228
Sau3AI	GATC	6 cut(s)	100, 104, 163, 337, 443, 447
SchI	GAGTC	1 cut(s)	400
SetI	ASST	6 cut(s)	229, 248, 271, 298, 318, 325
SpeI	ACTAGT	1 cut(s)	137
Sse9I	AATT	4 cut(s)	31, 218, 238, 365
SsiI	CCGC	1 cut(s)	437
SspMI	CTAG	3 cut(s)	138, 234, 481
TaiI	ACGT	1 cut(s)	298
TaqI	TCGA	3 cut(s)	103, 280, 446
TasI	AATT	4 cut(s)	31, 218, 238, 365
TatI	WGTACW	1 cut(s)	305
TfiI	GAWTC	1 cut(s)	16
Tru1I	TTAA	1 cut(s)	417
Tru9I	TTAA	1 cut(s)	417
TseI	GCWGC	3 cut(s)	194, 224, 227
TspDTI	ATGAA	1 cut(s)	482
TspGWI	ACGGA	1 cut(s)	203
Van91I	CCANNNNNTGG	1 cut(s)	173
XapI	RAATTY	2 cut(s)	238, 365
XmiI	GTMKAC	1 cut(s)	285
XspI	CTAG	3 cut(s)	138, 234, 481

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.