Rorug05G0322500

source UniProtKB

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0014822
Physical Location & Seq
Forward (+)
38594528 .. 38595189
662 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0322500.1

Sequence Viewer

Length: 201 bp
ATGGAAGCCCAGAAAAGTGAGACAAGCGGCTCAGCTCAACCTATGAAGCTCTTGTTCGTGGAGATGGGTGTGGGCTACGACCAACATGGGCAAGATGTTACGTCCGCAGCAATGCGGGCTTGTAGAGATGCCATCACTTCCAATTCGATCCCTGCTTTTCGAAGAGGGGTTCAGGGTAGTGAGGTTTTGACATGGGGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_C48 Transposase_24

Protein Analysis

66

Amino Acids

7.09

Weight (kDa)

5.62

Isoelectric Point (pI)

28.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lin0512_fam PF09585 18 - 57 3.8e-15 Conserved hypothetical protein (Lin0512_fam)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 27, 105, 115
AclWI GGATC 1 cut(s) 142
AluBI AGCT 2 cut(s) 35, 49
AluI AGCT 2 cut(s) 35, 49
Alw26I GTCTC 1 cut(s) 14
AlwI GGATC 1 cut(s) 142
ApeKI GCWGC 1 cut(s) 107
AsuII TTCGAA 1 cut(s) 160
BbvI GCAGC 1 cut(s) 119
BccI CCATC 2 cut(s) 58, 140
BcoDI GTCTC 1 cut(s) 14
BisI GCNGC 2 cut(s) 28, 108
BlpI GCTNAGC 1 cut(s) 31
BlsI GCNGC 2 cut(s) 29, 109
BmsI GCATC 1 cut(s) 118
Bpu1102I GCTNAGC 1 cut(s) 31
Bpu14I TTCGAA 1 cut(s) 160
Bse3DI GCAATG 1 cut(s) 117
BseMI GCAATG 1 cut(s) 117
BseMII CTCAG 1 cut(s) 45
BseXI GCAGC 1 cut(s) 119
BsmAI GTCTC 1 cut(s) 14
Bsp119I TTCGAA 1 cut(s) 160
Bsp143I GATC 1 cut(s) 147
Bsp1720I GCTNAGC 1 cut(s) 31
BspACI CCGC 3 cut(s) 27, 105, 115
BspCNI CTCAG 1 cut(s) 44
BspPI GGATC 1 cut(s) 142
BspT104I TTCGAA 1 cut(s) 160
BsrDI GCAATG 1 cut(s) 117
BssMI GATC 1 cut(s) 147
Bst6I CTCTTC 1 cut(s) 157
BstBI TTCGAA 1 cut(s) 160
BstC8I GCNNGC 1 cut(s) 117
BstDEI CTNAG 1 cut(s) 31
BstKTI GATC 1 cut(s) 150
BstMAI GTCTC 1 cut(s) 14
BstMBI GATC 1 cut(s) 147
BstMWI GCNNNNNNNGC 1 cut(s) 116
BstV1I GCAGC 1 cut(s) 119
Cac8I GCNNGC 1 cut(s) 117
CviAII CATG 2 cut(s) 86, 192
CviJI RGCY 6 cut(s) 8, 30, 35, 49, 75, 119
CviKI_1 RGCY 6 cut(s) 8, 30, 35, 49, 75, 119
DdeI CTNAG 1 cut(s) 31
DpnI GATC 1 cut(s) 149
DpnII GATC 1 cut(s) 147
Eam1104I CTCTTC 1 cut(s) 157
EarI CTCTTC 1 cut(s) 157
FaeI CATG 2 cut(s) 89, 195
FaiI YATR 3 cut(s) 44, 87, 193
FatI CATG 2 cut(s) 85, 191
FauI CCCGC 1 cut(s) 108
Fnu4HI GCNGC 2 cut(s) 28, 108
Fsp4HI GCNGC 2 cut(s) 28, 108
GluI GCNGC 2 cut(s) 28, 108
Hin1II CATG 2 cut(s) 89, 195
HpyCH4IV ACGT 1 cut(s) 101
HpyF10VI GCNNNNNNNGC 1 cut(s) 116
HpyF3I CTNAG 1 cut(s) 31
HpySE526I ACGT 1 cut(s) 101
Hsp92II CATG 2 cut(s) 89, 195
Kzo9I GATC 1 cut(s) 147
LpnPI CCDG 3 cut(s) 23, 158, 165
Lsp1109I GCAGC 1 cut(s) 119
LweI GCATC 1 cut(s) 118
MaeII ACGT 1 cut(s) 101
MaeIII GTNAC 1 cut(s) 97
MalI GATC 1 cut(s) 149
MboI GATC 1 cut(s) 147
MboII GAAGA 1 cut(s) 174
MluCI AATT 1 cut(s) 142
MnlI CCTC 2 cut(s) 158, 175
MwoI GCNNNNNNNGC 1 cut(s) 116
NdeII GATC 1 cut(s) 147
NlaIII CATG 2 cut(s) 89, 195
NspV TTCGAA 1 cut(s) 160
PkrI GCNGC 2 cut(s) 29, 109
SatI GCNGC 2 cut(s) 28, 108
Sau3AI GATC 1 cut(s) 147
SetI ASST 5 cut(s) 37, 43, 51, 104, 186
SfaNI GCATC 1 cut(s) 118
SfuI TTCGAA 1 cut(s) 160
Sse9I AATT 1 cut(s) 142
SsiI CCGC 3 cut(s) 27, 105, 115
TaiI ACGT 1 cut(s) 104
TaqI TCGA 2 cut(s) 146, 160
TasI AATT 1 cut(s) 142
TauI GCSGC 1 cut(s) 30
TseI GCWGC 1 cut(s) 107
TspDTI ATGAA 1 cut(s) 59
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.