Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0014822

Physical Location & Seq

Genomic Coordinates Forward (+)

57806613 .. 57808668

Gene Structure 2056 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG303900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGAGTTGGTTCTTGTGTTCTGGAAAATCAAGCACAAATGCAAAGAAGAAGAAGAAGCAGAGTCATAAGCCAGCAGATCAGATCTCATCACTTTCAGATCAAGTGAAGGCAAATTCAGCATTAAAGGAAGGGTCTAAAAGTAGCGGCTCTGATCACATTGCAGCACATACATTTACATTTCGCGAATTGGCAGCTGCAACAAAGAATTTTAGAGCAGATTGTTTTGTGGGTGAAGGAGGTTTTGGTCAAGTATATAGAGGGCACCTGGAGAGTTCTAATCAGGAAGTGGCTATCAAGAAACTTGATTCTAATGGACTTCAAGGGAACAGAGAATTCCTTGTCGAAGTATTAATGCTAAGCCTACTTCACCACCCGAATCTTGTCAACTTAATAGGCTACTGTGCTGATGGGGATCAGAGGCTTTTGGTATACGAGTACATGCCATTGGGATCCTTAGAAGACCATTTACATGGTATATACAGCTGTAACAGCATTATCTGCATTTTTTGCCAAAACTTCATATTTATAAAGTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002218 GO:0002221 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0002757 GO:0002758 GO:0002764 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009814 GO:0009816 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0031347 GO:0031349 GO:0036211 GO:0038023 GO:0042742 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045087 GO:0045088 GO:0045089 GO:0046777 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0080134 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

178

Amino Acids

19.68

Weight (kDa)

8.2

Isoelectric Point (pI)

24.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	75 - 157	2.2e-18	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	75 - 157	1.7e-15	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0014822)

Species	Orthologous Gene IDs
malus_domestica	MD07G1169000.v1.1
pyrus_communis	pycom04g10240 pycom04g10280 pycom07g17520
rosa_chinensis	RchiOBHm_Chr3g0494801
rosa_laevigata	RLG00000033638
rosa_roxburghii	Rroxscaffold_7G00212040
rosa_rugosa	Rorug02G0020600 Rorug04G0064300 Rorug04G0225700 Rorug05G0033200 Rorug05G0076800 Rorug05G0322500
rosa_samantha	Rh1CG303900 Rh2DG229100 Rh3BG288000 Rh6BG143800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	527
AccB1I	GGYRCC	1 cut(s)	261
AccI	GTMKAC	1 cut(s)	429
AccII	CGCG	1 cut(s)	183
AciI	CCGC	1 cut(s)	144
AclWI	GGATC	3 cut(s)	420, 444, 457
AcsI	RAATTY	3 cut(s)	112, 205, 332
AfaI	GTAC	1 cut(s)	437
AgsI	TTSAA	1 cut(s)	320
AjnI	CCWGG	1 cut(s)	264
AjuI	GAANNNNNNNTTGG	2 cut(s)	225, 257
AluBI	AGCT	2 cut(s)	194, 483
AluI	AGCT	2 cut(s)	194, 483
AlwI	GGATC	3 cut(s)	420, 444, 457
ApeKI	GCWGC	3 cut(s)	161, 191, 194
ApoI	RAATTY	3 cut(s)	112, 205, 332
AseI	ATTAAT	1 cut(s)	350
AsuHPI	GGTGA	2 cut(s)	242, 359
BaeGI	GKGCMC	1 cut(s)	264
BamHI	GGATCC	1 cut(s)	449
BanI	GGYRCC	1 cut(s)	261
BarI	GAAGNNNNNNTAC	2 cut(s)	450, 482
BbsI	GAAGAC	1 cut(s)	465
BbvI	GCAGC	3 cut(s)	173, 181, 203
BccI	CCATC	1 cut(s)	401
BciT130I	CCWGG	1 cut(s)	266
BclI	TGATCA	1 cut(s)	151
BglII	AGATCT	1 cut(s)	81
BisI	GCNGC	4 cut(s)	145, 162, 192, 195
BlpI	GCTNAGC	1 cut(s)	356
BlsI	GCNGC	4 cut(s)	146, 163, 193, 196
Bme1390I	CCNGG	1 cut(s)	266
BmiI	GGNNCC	2 cut(s)	263, 451
BmrFI	CCNGG	1 cut(s)	266
BpiI	GAAGAC	1 cut(s)	465
BpmI	CTGGAG	1 cut(s)	287
Bpu1102I	GCTNAGC	1 cut(s)	356
BsaBI	GATNNNNATC	1 cut(s)	411
Bse3DI	GCAATG	1 cut(s)	156
Bse8I	GATNNNNATC	1 cut(s)	411
BseBI	CCWGG	1 cut(s)	266
BseJI	GATNNNNATC	1 cut(s)	411
BseMI	GCAATG	1 cut(s)	156
BseSI	GKGCMC	1 cut(s)	264
BseXI	GCAGC	3 cut(s)	173, 181, 203
Bsh1236I	CGCG	1 cut(s)	183
BshNI	GGYRCC	1 cut(s)	261
Bsp1286I	GDGCHC	1 cut(s)	264
Bsp143I	GATC	6 cut(s)	76, 81, 97, 151, 412, 449
Bsp1720I	GCTNAGC	1 cut(s)	356
Bsp68I	TCGCGA	1 cut(s)	183
BspACI	CCGC	1 cut(s)	144
BspFNI	CGCG	1 cut(s)	183
BspLI	GGNNCC	2 cut(s)	263, 451
BspPI	GGATC	3 cut(s)	420, 444, 457
BspT107I	GGYRCC	1 cut(s)	261
BsrDI	GCAATG	1 cut(s)	156
BssMI	GATC	6 cut(s)	76, 81, 97, 151, 412, 449
BssNAI	GTATAC	1 cut(s)	430
Bst1107I	GTATAC	1 cut(s)	430
Bst2UI	CCWGG	1 cut(s)	266
Bst4CI	ACNGT	1 cut(s)	401
BstAPI	GCANNNNNTGC	2 cut(s)	498, 507
BstC8I	GCNNGC	1 cut(s)	72
BstDEI	CTNAG	2 cut(s)	356, 454
BstFNI	CGCG	1 cut(s)	183
BstKTI	GATC	6 cut(s)	79, 84, 100, 154, 415, 452
BstMBI	GATC	6 cut(s)	76, 81, 97, 151, 412, 449
BstMWI	GCNNNNNNNGC	4 cut(s)	116, 489, 498, 507
BstNI	CCWGG	1 cut(s)	266
BstNSI	RCATGY	1 cut(s)	442
BstSCI	CCNGG	1 cut(s)	264
BstSLI	GKGCMC	1 cut(s)	264
BstUI	CGCG	1 cut(s)	183
BstV1I	GCAGC	3 cut(s)	173, 181, 203
BstV2I	GAAGAC	1 cut(s)	465
BstX2I	RGATCY	2 cut(s)	81, 449
BstXI	CCANNNNNNTGG	1 cut(s)	470
BstYI	RGATCY	2 cut(s)	81, 449
BstZ17I	GTATAC	1 cut(s)	430
BtuMI	TCGCGA	1 cut(s)	183
Cac8I	GCNNGC	1 cut(s)	72
Csp6I	GTAC	1 cut(s)	436
CviAII	CATG	2 cut(s)	439, 470
CviJI	RGCY	8 cut(s)	70, 147, 194, 290, 360, 396, 421, 483
CviKI_1	RGCY	8 cut(s)	70, 147, 194, 290, 360, 396, 421, 483
CviQI	GTAC	1 cut(s)	436
DdeI	CTNAG	2 cut(s)	356, 454
DpnI	GATC	6 cut(s)	78, 83, 99, 153, 414, 451
DpnII	GATC	6 cut(s)	76, 81, 97, 151, 412, 449
EcoRI	GAATTC	1 cut(s)	332
EcoRII	CCWGG	1 cut(s)	264
FaeI	CATG	2 cut(s)	442, 473
FatI	CATG	2 cut(s)	438, 469
FbaI	TGATCA	1 cut(s)	151
FblI	GTMKAC	1 cut(s)	429
Fnu4HI	GCNGC	4 cut(s)	145, 162, 192, 195
Fsp4HI	GCNGC	4 cut(s)	145, 162, 192, 195
GluI	GCNGC	4 cut(s)	145, 162, 192, 195
GsuI	CTGGAG	1 cut(s)	287
Hin1II	CATG	2 cut(s)	442, 473
HincII	GTYRAC	1 cut(s)	385
HindII	GTYRAC	1 cut(s)	385
HinfI	GANTC	3 cut(s)	61, 305, 376
HphI	GGTGA	2 cut(s)	242, 359
Hpy166II	GTNNAC	2 cut(s)	385, 430
Hpy188I	TCNGA	4 cut(s)	81, 97, 151, 417
Hpy188III	TCNNGA	5 cut(s)	21, 182, 281, 295, 534
Hpy8I	GTNNAC	2 cut(s)	385, 430
HpyAV	CCTTC	3 cut(s)	100, 122, 227
HpyCH4III	ACNGT	1 cut(s)	401
HpyCH4V	TGCA	4 cut(s)	41, 161, 197, 501
HpyF10VI	GCNNNNNNNGC	4 cut(s)	116, 489, 498, 507
HpyF3I	CTNAG	2 cut(s)	356, 454
Hsp92II	CATG	2 cut(s)	442, 473
Ksp22I	TGATCA	1 cut(s)	151
Kzo9I	GATC	6 cut(s)	76, 81, 97, 151, 412, 449
LpnPI	CCDG	5 cut(s)	6, 84, 251, 266, 278
Lsp1109I	GCAGC	3 cut(s)	173, 181, 203
MaeIII	GTNAC	1 cut(s)	485
MalI	GATC	6 cut(s)	78, 83, 99, 153, 414, 451
MboI	GATC	6 cut(s)	76, 81, 97, 151, 412, 449
MboII	GAAGA	4 cut(s)	58, 61, 64, 470
MflI	RGATCY	2 cut(s)	81, 449
MhlI	GDGCHC	1 cut(s)	264
MluCI	AATT	4 cut(s)	112, 185, 205, 332
MlyI	GAGTC	1 cut(s)	70
MnlI	CCTC	3 cut(s)	230, 251, 411
MseI	TTAA	3 cut(s)	122, 350, 389
MslI	CAYNNNNRTG	1 cut(s)	468
MspA1I	CMGCKG	2 cut(s)	194, 483
MspR9I	CCNGG	1 cut(s)	266
MvaI	CCWGG	1 cut(s)	266
MvnI	CGCG	1 cut(s)	183
MwoI	GCNNNNNNNGC	4 cut(s)	116, 489, 498, 507
NdeII	GATC	6 cut(s)	76, 81, 97, 151, 412, 449
NlaIII	CATG	2 cut(s)	442, 473
NlaIV	GGNNCC	2 cut(s)	263, 451
NruI	TCGCGA	1 cut(s)	183
NspI	RCATGY	1 cut(s)	442
PfeI	GAWTC	2 cut(s)	305, 376
PkrI	GCNGC	4 cut(s)	146, 163, 193, 196
PleI	GAGTC	1 cut(s)	69
PpsI	GAGTC	1 cut(s)	69
PshBI	ATTAAT	1 cut(s)	350
PsiI	TTATAA	1 cut(s)	527
Psp6I	CCWGG	1 cut(s)	264
PspGI	CCWGG	1 cut(s)	264
PspN4I	GGNNCC	2 cut(s)	263, 451
PsuI	RGATCY	2 cut(s)	81, 449
PvuII	CAGCTG	2 cut(s)	194, 483
RruI	TCGCGA	1 cut(s)	183
RsaI	GTAC	1 cut(s)	437
RsaNI	GTAC	1 cut(s)	436
RseI	CAYNNNNRTG	1 cut(s)	468
SaqAI	TTAA	3 cut(s)	122, 350, 389
SatI	GCNGC	4 cut(s)	145, 162, 192, 195
Sau3AI	GATC	6 cut(s)	76, 81, 97, 151, 412, 449
SchI	GAGTC	1 cut(s)	70
ScrFI	CCNGG	1 cut(s)	266
SduI	GDGCHC	1 cut(s)	264
SetI	ASST	4 cut(s)	196, 241, 267, 485
SmiMI	CAYNNNNRTG	1 cut(s)	468
Sse9I	AATT	4 cut(s)	112, 185, 205, 332
SsiI	CCGC	1 cut(s)	144
StyD4I	CCNGG	1 cut(s)	264
TaaI	ACNGT	1 cut(s)	401
TaqI	TCGA	1 cut(s)	342
TasI	AATT	4 cut(s)	112, 185, 205, 332
TatI	WGTACW	1 cut(s)	435
TauI	GCSGC	1 cut(s)	147
TfiI	GAWTC	2 cut(s)	305, 376
Tru1I	TTAA	3 cut(s)	122, 350, 389
Tru9I	TTAA	3 cut(s)	122, 350, 389
TseI	GCWGC	3 cut(s)	161, 191, 194
TspDTI	ATGAA	1 cut(s)	508
VspI	ATTAAT	1 cut(s)	350
XapI	RAATTY	3 cut(s)	112, 205, 332
XceI	RCATGY	1 cut(s)	442
XmiI	GTMKAC	1 cut(s)	429

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.