Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0014822

Physical Location & Seq

Genomic Coordinates Forward (+)

29883098 .. 29887817

Gene Structure 4720 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000033638

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

ATGGTTGATAGTGCTCGTAGCAAGGCTGCAACGTCGTCTGTTGGTAAGAATGTTGTTGGTGGTGGTAGAAAGGTTGTTGTTGCTGCTGATGCGTACAAGGCACATTTGGTGACGATGGTCCAACTTGAGTATGAATATGAGGCACCTGCTCAGAATCTTGAAGATCAAGTCTGTGCATTTGATGGTTCATTGAAGGAAAATTCGGCATTAAAGGAAGGGTCTAAGGGTAGCAGCTCTGATCACATTGCAACACATCCATTTACATTTCGCGAATTGGCAGCTGCAACAAAGAATTTTAGAGCAGATTGTTTTGTGGGTGAAGGAGGTTGCCCTATTATTTTTCCACGGGAGAGTGAGCCTGTGCTGTTGGGTGTTGCCATTCTTGGTGCTGTAGCTGCAAGGAAATATTTTAGTTTGCATGATGCCATCAAGGCCCTGAATGCTTCGGGGAAGGTGCGGGTTTGGTCAAGAAAAAAGGCATCAAAGGATTATTTGTACAAAGTAGAAGTAAGGAGCCATTCCTTGTTGATGCTTGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002218 GO:0002221 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0002757 GO:0002758 GO:0002764 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009814 GO:0009816 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0031347 GO:0031349 GO:0036211 GO:0038023 GO:0042742 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045087 GO:0045088 GO:0045089 GO:0046777 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0080134 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

180

Amino Acids

19.29

Weight (kDa)

9.1

Isoelectric Point (pI)

25.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014822)

Species	Orthologous Gene IDs
malus_domestica	MD07G1169000.v1.1
pyrus_communis	pycom04g10240 pycom04g10280 pycom07g17520
rosa_chinensis	RchiOBHm_Chr3g0494801
rosa_laevigata	RLG00000033638
rosa_roxburghii	Rroxscaffold_7G00212040
rosa_rugosa	Rorug02G0020600 Rorug04G0064300 Rorug04G0225700 Rorug05G0033200 Rorug05G0076800 Rorug05G0322500
rosa_samantha	Rh1CG303900 Rh2DG229100 Rh3BG288000 Rh6BG143800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	154
Acc36I	ACCTGC	1 cut(s)	154
AccB1I	GGYRCC	1 cut(s)	142
AccII	CGCG	1 cut(s)	270
AciI	CCGC	1 cut(s)	457
AcsI	RAATTY	2 cut(s)	199, 292
AfaI	GTAC	2 cut(s)	95, 497
AgsI	TTSAA	2 cut(s)	161, 193
AluBI	AGCT	3 cut(s)	234, 281, 395
AluI	AGCT	3 cut(s)	234, 281, 395
Alw21I	GWGCWC	1 cut(s)	16
AoxI	GGCC	1 cut(s)	432
ApeKI	GCWGC	6 cut(s)	26, 83, 231, 278, 281, 395
ApoI	RAATTY	2 cut(s)	199, 292
AspS9I	GGNCC	2 cut(s)	118, 433
AsuHPI	GGTGA	2 cut(s)	121, 329
AvaII	GGWCC	1 cut(s)	118
BanI	GGYRCC	1 cut(s)	142
Bbv12I	GWGCWC	1 cut(s)	16
BbvI	GCAGC	6 cut(s)	13, 70, 243, 268, 290, 382
BccI	CCATC	3 cut(s)	109, 176, 434
BclI	TGATCA	1 cut(s)	238
BfmI	CTRYAG	1 cut(s)	390
BfuAI	ACCTGC	1 cut(s)	154
BglI	GCCNNNNNGGC	1 cut(s)	431
BisI	GCNGC	6 cut(s)	27, 84, 232, 279, 282, 396
BlsI	GCNGC	6 cut(s)	28, 85, 233, 280, 283, 397
Bme18I	GGWCC	1 cut(s)	118
BmgT120I	GGNCC	2 cut(s)	118, 433
BmiI	GGNNCC	2 cut(s)	144, 515
BmsI	GCATC	4 cut(s)	79, 412, 488, 519
BoxI	GACNNNNGTC	1 cut(s)	116
BpuEI	CTTGAG	1 cut(s)	146
BsaJI	CCNNGG	1 cut(s)	344
Bse3DI	GCAATG	1 cut(s)	243
BseDI	CCNNGG	1 cut(s)	344
BseGI	GGATG	1 cut(s)	253
BseMI	GCAATG	1 cut(s)	243
BseMII	CTCAG	1 cut(s)	164
BseXI	GCAGC	6 cut(s)	13, 70, 243, 268, 290, 382
Bsh1236I	CGCG	1 cut(s)	270
BshFI	GGCC	1 cut(s)	434
BshNI	GGYRCC	1 cut(s)	142
BsiHKAI	GWGCWC	1 cut(s)	16
BsmI	GAATGC	1 cut(s)	445
BsnI	GGCC	1 cut(s)	434
Bsp1286I	GDGCHC	1 cut(s)	16
Bsp1407I	TGTACA	1 cut(s)	495
Bsp143I	GATC	2 cut(s)	163, 238
Bsp68I	TCGCGA	1 cut(s)	270
BspACI	CCGC	1 cut(s)	457
BspANI	GGCC	1 cut(s)	434
BspCNI	CTCAG	1 cut(s)	163
BspFNI	CGCG	1 cut(s)	270
BspLI	GGNNCC	2 cut(s)	144, 515
BspMI	ACCTGC	1 cut(s)	154
BspT107I	GGYRCC	1 cut(s)	142
BsrDI	GCAATG	1 cut(s)	243
BsrGI	TGTACA	1 cut(s)	495
BssECI	CCNNGG	1 cut(s)	344
BssMI	GATC	2 cut(s)	163, 238
BstAUI	TGTACA	1 cut(s)	495
BstDEI	CTNAG	2 cut(s)	150, 222
BstDSI	CCRYGG	1 cut(s)	344
BstF5I	GGATG	1 cut(s)	253
BstFNI	CGCG	1 cut(s)	270
BstKTI	GATC	2 cut(s)	166, 241
BstMBI	GATC	2 cut(s)	163, 238
BstMWI	GCNNNNNNNGC	5 cut(s)	89, 98, 395, 431, 440
BstPAI	GACNNNNGTC	1 cut(s)	116
BstSFI	CTRYAG	1 cut(s)	390
BstUI	CGCG	1 cut(s)	270
BstV1I	GCAGC	6 cut(s)	13, 70, 243, 268, 290, 382
BsuRI	GGCC	1 cut(s)	434
BtgI	CCRYGG	1 cut(s)	344
BtsCI	GGATG	1 cut(s)	253
BtuMI	TCGCGA	1 cut(s)	270
BveI	ACCTGC	1 cut(s)	154
Cfr13I	GGNCC	2 cut(s)	118, 433
Csp6I	GTAC	2 cut(s)	94, 496
CviAII	CATG	1 cut(s)	419
CviJI	RGCY	7 cut(s)	26, 234, 281, 358, 395, 434, 516
CviKI_1	RGCY	7 cut(s)	26, 234, 281, 358, 395, 434, 516
CviQI	GTAC	2 cut(s)	94, 496
DdeI	CTNAG	2 cut(s)	150, 222
DpnI	GATC	2 cut(s)	165, 240
DpnII	GATC	2 cut(s)	163, 238
Eco47I	GGWCC	1 cut(s)	118
EcoO109I	RGGNCCY	1 cut(s)	433
FaeI	CATG	1 cut(s)	422
FaiI	YATR	4 cut(s)	132, 138, 420, 538
FatI	CATG	1 cut(s)	418
FauI	CCCGC	1 cut(s)	450
FbaI	TGATCA	1 cut(s)	238
Fnu4HI	GCNGC	6 cut(s)	27, 84, 232, 279, 282, 396
FokI	GGATG	1 cut(s)	240
Fsp4HI	GCNGC	6 cut(s)	27, 84, 232, 279, 282, 396
GluI	GCNGC	6 cut(s)	27, 84, 232, 279, 282, 396
HaeIII	GGCC	1 cut(s)	434
Hin1II	CATG	1 cut(s)	422
HinfI	GANTC	1 cut(s)	154
HphI	GGTGA	2 cut(s)	121, 329
Hpy188I	TCNGA	2 cut(s)	153, 238
Hpy188III	TCNNGA	3 cut(s)	158, 269, 468
Hpy99I	CGWCG	1 cut(s)	37
HpyAV	CCTTC	4 cut(s)	187, 209, 314, 445
HpyCH4IV	ACGT	1 cut(s)	32
HpyCH4V	TGCA	6 cut(s)	29, 176, 248, 284, 398, 418
HpyF10VI	GCNNNNNNNGC	5 cut(s)	89, 98, 395, 431, 440
HpyF3I	CTNAG	2 cut(s)	150, 222
HpySE526I	ACGT	1 cut(s)	32
Hsp92II	CATG	1 cut(s)	422
Ksp22I	TGATCA	1 cut(s)	238
Kzo9I	GATC	2 cut(s)	163, 238
LmnI	GCTCC	1 cut(s)	513
LpnPI	CCDG	3 cut(s)	159, 372, 449
Lsp1109I	GCAGC	6 cut(s)	13, 70, 243, 268, 290, 382
LweI	GCATC	4 cut(s)	79, 412, 488, 519
MaeII	ACGT	1 cut(s)	32
MaeIII	GTNAC	1 cut(s)	109
MalI	GATC	2 cut(s)	165, 240
MboI	GATC	2 cut(s)	163, 238
MboII	GAAGA	1 cut(s)	173
MhlI	GDGCHC	1 cut(s)	16
MluCI	AATT	3 cut(s)	199, 272, 292
MmeI	TCCRAC	1 cut(s)	145
MnlI	CCTC	2 cut(s)	133, 317
MseI	TTAA	1 cut(s)	209
MspA1I	CMGCKG	1 cut(s)	281
Mva1269I	GAATGC	1 cut(s)	445
MvnI	CGCG	1 cut(s)	270
MwoI	GCNNNNNNNGC	5 cut(s)	89, 98, 395, 431, 440
NdeII	GATC	2 cut(s)	163, 238
NlaIII	CATG	1 cut(s)	422
NlaIV	GGNNCC	2 cut(s)	144, 515
NmuCI	GTSAC	1 cut(s)	109
NruI	TCGCGA	1 cut(s)	270
PaqCI	CACCTGC	1 cut(s)	154
PctI	GAATGC	1 cut(s)	445
PfeI	GAWTC	1 cut(s)	154
PkrI	GCNGC	6 cut(s)	28, 85, 233, 280, 283, 397
PshAI	GACNNNNGTC	1 cut(s)	116
PspN4I	GGNNCC	2 cut(s)	144, 515
PspPI	GGNCC	2 cut(s)	118, 433
PvuII	CAGCTG	1 cut(s)	281
RruI	TCGCGA	1 cut(s)	270
RsaI	GTAC	2 cut(s)	95, 497
RsaNI	GTAC	2 cut(s)	94, 496
SaqAI	TTAA	1 cut(s)	209
SatI	GCNGC	6 cut(s)	27, 84, 232, 279, 282, 396
Sau3AI	GATC	2 cut(s)	163, 238
Sau96I	GGNCC	2 cut(s)	118, 433
SduI	GDGCHC	1 cut(s)	16
SetI	ASST	8 cut(s)	35, 75, 148, 236, 283, 328, 397, 456
SfaNI	GCATC	4 cut(s)	79, 412, 488, 519
SfcI	CTRYAG	1 cut(s)	390
SinI	GGWCC	1 cut(s)	118
SmlI	CTYRAG	1 cut(s)	125
SmoI	CTYRAG	1 cut(s)	125
Sse9I	AATT	3 cut(s)	199, 272, 292
SsiI	CCGC	1 cut(s)	457
SspI	AATATT	1 cut(s)	407
TaiI	ACGT	1 cut(s)	35
TasI	AATT	3 cut(s)	199, 272, 292
TatI	WGTACW	1 cut(s)	495
TfiI	GAWTC	1 cut(s)	154
Tru1I	TTAA	1 cut(s)	209
Tru9I	TTAA	1 cut(s)	209
TseFI	GTSAC	1 cut(s)	109
TseI	GCWGC	6 cut(s)	26, 83, 231, 278, 281, 395
Tsp45I	GTSAC	1 cut(s)	109
TspDTI	ATGAA	2 cut(s)	147, 177
VpaK11BI	GGWCC	1 cut(s)	118
XapI	RAATTY	2 cut(s)	199, 292

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.