Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0014822

Physical Location & Seq

Genomic Coordinates Forward (+)

2169342 .. 2170830

Gene Structure 1489 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0033200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

ATGTGTGAAAGTGAAAAAACGTATTTCCATGCGTGTGTTCTGGAAACTTTGGCCATTCTGGGTTTTCTGGCCTTTTTCCTGTGGCTAATTTTTCACGTGAAATCCCCTAGTTATACCATTGTGGATATCACCATCCCAAAGTCTAGTTTAGAGAATGGGGGTCAGAATGGCTATATTGTATATGCCCTTGAAATTAAAAACTGTAACACATACTACAGTATTTACTATGATACCTCTCTCTTGACGTTCAATTATGGGCAGGATAAAGTTGCAGAGAAAACCATACCTCCTTTTCATCAAGGAACTGGCAGAAGCAGACGGCGTACAGTGATTGATTATATGGATGCCAATCCAAAAGTGTGGAGAGCTGTTCGTAATTCAATATCGAATGCAACTGCAGAATTGAAGGTGACTTTACTAACTAGGATTCGATACAACACATGGGGAAGCAAGAGACATCATGTGCTAGACTTGCAAGGTTTGTTACCAATAGGTAAAGACGGCAAGCTTTCTGGTAAGAAGAAGAAAATCAAGCTAAGATATGCTTCCAAGAAACTGAGGACAAATAGTCTTCGATATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002218 GO:0002221 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0002757 GO:0002758 GO:0002764 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009814 GO:0009816 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0031347 GO:0031349 GO:0036211 GO:0038023 GO:0042742 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045087 GO:0045088 GO:0045089 GO:0046777 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0080134 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

193

Amino Acids

22.2

Weight (kDa)

9.82

Isoelectric Point (pI)

33.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LEA_2	PF03168	63 - 155	1.5e-07	Late embryogenesis abundant protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0014822)

Species	Orthologous Gene IDs
malus_domestica	MD07G1169000.v1.1
pyrus_communis	pycom04g10240 pycom04g10280 pycom07g17520
rosa_chinensis	RchiOBHm_Chr3g0494801
rosa_laevigata	RLG00000033638
rosa_roxburghii	Rroxscaffold_7G00212040
rosa_rugosa	Rorug02G0020600 Rorug04G0064300 Rorug04G0225700 Rorug05G0033200 Rorug05G0076800 Rorug05G0322500
rosa_samantha	Rh1CG303900 Rh2DG229100 Rh3BG288000 Rh6BG143800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	51
AcvI	CACGTG	1 cut(s)	97
AfaI	GTAC	1 cut(s)	325
AgsI	TTSAA	4 cut(s)	191, 250, 381, 406
AhdI	GACNNNNNGTC	1 cut(s)	567
AluBI	AGCT	3 cut(s)	368, 508, 535
AluI	AGCT	3 cut(s)	368, 508, 535
Alw26I	GTCTC	1 cut(s)	448
AoxI	GGCC	2 cut(s)	51, 69
AsuHPI	GGTGA	2 cut(s)	121, 421
BalI	TGGCCA	1 cut(s)	53
BbrPI	CACGTG	1 cut(s)	97
BbsI	GAAGAC	1 cut(s)	563
BccI	CCATC	1 cut(s)	140
BceAI	ACGGC	2 cut(s)	335, 517
BcoDI	GTCTC	1 cut(s)	448
BfaI	CTAG	4 cut(s)	108, 144, 423, 467
BfmI	CTRYAG	2 cut(s)	214, 396
BmeRI	GACNNNNNGTC	1 cut(s)	567
BmsI	GCATC	1 cut(s)	334
BpiI	GAAGAC	1 cut(s)	563
BsaAI	YACGTR	1 cut(s)	97
BsaBI	GATNNNNATC	1 cut(s)	348
BsaXI	ACNNNNNCTCC	2 cut(s)	271, 301
Bse1I	ACTGG	1 cut(s)	310
Bse8I	GATNNNNATC	1 cut(s)	348
BseGI	GGATG	2 cut(s)	132, 349
BseJI	GATNNNNATC	1 cut(s)	348
BseMII	CTCAG	1 cut(s)	548
BseNI	ACTGG	1 cut(s)	310
BshFI	GGCC	2 cut(s)	53, 71
BsmAI	GTCTC	1 cut(s)	448
BsmI	GAATGC	1 cut(s)	394
BsnI	GGCC	2 cut(s)	53, 71
BspANI	GGCC	2 cut(s)	53, 71
BspCNI	CTCAG	1 cut(s)	549
BspMAI	CTGCAG	1 cut(s)	400
BsrI	ACTGG	1 cut(s)	310
Bst4CI	ACNGT	3 cut(s)	203, 218, 328
BstBAI	YACGTR	1 cut(s)	97
BstC8I	GCNNGC	1 cut(s)	506
BstDEI	CTNAG	2 cut(s)	536, 557
BstF5I	GGATG	2 cut(s)	132, 349
BstMAI	GTCTC	1 cut(s)	448
BstMWI	GCNNNNNNNGC	1 cut(s)	472
BstSFI	CTRYAG	2 cut(s)	214, 396
BstV2I	GAAGAC	1 cut(s)	563
BstXI	CCANNNNNNTGG	1 cut(s)	360
BsuRI	GGCC	2 cut(s)	53, 71
BtsCI	GGATG	2 cut(s)	132, 349
BtsIMutI	CAGTG	1 cut(s)	333
Cac8I	GCNNGC	1 cut(s)	506
Csp6I	GTAC	1 cut(s)	324
CviAII	CATG	3 cut(s)	29, 441, 461
CviJI	RGCY	7 cut(s)	53, 71, 85, 171, 368, 508, 535
CviKI_1	RGCY	7 cut(s)	53, 71, 85, 171, 368, 508, 535
CviQI	GTAC	1 cut(s)	324
DdeI	CTNAG	2 cut(s)	536, 557
DriI	GACNNNNNGTC	1 cut(s)	567
EaeI	YGGCCR	1 cut(s)	51
Eam1105I	GACNNNNNGTC	1 cut(s)	567
Eco32I	GATATC	1 cut(s)	127
Eco72I	CACGTG	1 cut(s)	97
EcoRV	GATATC	1 cut(s)	127
FaeI	CATG	3 cut(s)	32, 444, 464
FalI	AAGNNNNNCTT	2 cut(s)	529, 561
FatI	CATG	3 cut(s)	28, 440, 460
FokI	GGATG	2 cut(s)	119, 356
FspBI	CTAG	4 cut(s)	108, 144, 423, 467
HaeIII	GGCC	2 cut(s)	53, 71
Hin1II	CATG	3 cut(s)	32, 444, 464
HindIII	AAGCTT	1 cut(s)	506
HinfI	GANTC	1 cut(s)	427
HphI	GGTGA	2 cut(s)	121, 421
Hpy188I	TCNGA	1 cut(s)	165
Hpy188III	TCNNGA	2 cut(s)	41, 241
HpyAV	CCTTC	1 cut(s)	400
HpyCH4III	ACNGT	3 cut(s)	203, 218, 328
HpyCH4IV	ACGT	3 cut(s)	20, 96, 245
HpyCH4V	TGCA	4 cut(s)	272, 392, 398, 475
HpyF10VI	GCNNNNNNNGC	1 cut(s)	472
HpyF3I	CTNAG	2 cut(s)	536, 557
HpySE526I	ACGT	3 cut(s)	20, 96, 245
Hsp92II	CATG	3 cut(s)	32, 444, 464
LpnPI	CCDG	7 cut(s)	26, 44, 53, 92, 245, 291, 498
LweI	GCATC	1 cut(s)	334
MaeI	CTAG	4 cut(s)	108, 144, 423, 467
MaeII	ACGT	3 cut(s)	20, 96, 245
MaeIII	GTNAC	3 cut(s)	203, 409, 483
MboII	GAAGA	3 cut(s)	532, 535, 563
MlsI	TGGCCA	1 cut(s)	53
MluCI	AATT	5 cut(s)	87, 192, 250, 376, 401
MluNI	TGGCCA	1 cut(s)	53
MnlI	CCTC	3 cut(s)	244, 297, 552
Mox20I	TGGCCA	1 cut(s)	53
MscI	TGGCCA	1 cut(s)	53
MseI	TTAA	1 cut(s)	195
MslI	CAYNNNNRTG	1 cut(s)	33
Msp20I	TGGCCA	1 cut(s)	53
Mva1269I	GAATGC	1 cut(s)	394
MwoI	GCNNNNNNNGC	1 cut(s)	472
NlaIII	CATG	3 cut(s)	32, 444, 464
NmuCI	GTSAC	1 cut(s)	409
PctI	GAATGC	1 cut(s)	394
PfeI	GAWTC	1 cut(s)	427
PmaCI	CACGTG	1 cut(s)	97
PmlI	CACGTG	1 cut(s)	97
Ppu21I	YACGTR	1 cut(s)	97
PspCI	CACGTG	1 cut(s)	97
PstI	CTGCAG	1 cut(s)	400
RsaI	GTAC	1 cut(s)	325
RsaNI	GTAC	1 cut(s)	324
RseI	CAYNNNNRTG	1 cut(s)	33
SaqAI	TTAA	1 cut(s)	195
SfaNI	GCATC	1 cut(s)	334
SfcI	CTRYAG	2 cut(s)	214, 396
SmiMI	CAYNNNNRTG	1 cut(s)	33
Sse9I	AATT	5 cut(s)	87, 192, 250, 376, 401
SspMI	CTAG	4 cut(s)	108, 144, 423, 467
TaaI	ACNGT	3 cut(s)	203, 218, 328
TaiI	ACGT	3 cut(s)	23, 99, 248
TaqI	TCGA	3 cut(s)	386, 430, 574
TasI	AATT	5 cut(s)	87, 192, 250, 376, 401
TfiI	GAWTC	1 cut(s)	427
Tru1I	TTAA	1 cut(s)	195
Tru9I	TTAA	1 cut(s)	195
TscAI	CASTG	1 cut(s)	333
TseFI	GTSAC	1 cut(s)	409
Tsp45I	GTSAC	1 cut(s)	409
TspDTI	ATGAA	1 cut(s)	284
TspRI	CASTG	1 cut(s)	333
XspI	CTAG	4 cut(s)	108, 144, 423, 467

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.