Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0014822

Physical Location & Seq

Genomic Coordinates Reverse (-)

62476320 .. 62481980

Gene Structure 5661 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00212040.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

ATGGGTTTCGCCGTCTCTCCTTTCTCTTTCCATGGGCCTCCCCTTCTCAGCCCCTCTTCTACCATCGAGGCGGCGATGGCCATCACTCTCATCTACTGTAACTCGGTAAGGTGTGAAATTGGATATTGCTTAGACCTGCCTATAGTAGGGGAAGAGATAGGTTCATTGAAGGAAAATTCGGCATTAAAGGAAGGGTCTAAGGGTAGCAGCTCTGATCACATTGCAGCACATACATTTACATTTCGCGAATTGGCAGCTGCAACAAAGAATTTTAGAGCAGATTGTTTTGTGGGTGAAGGAGGTTTTGGTCAAGTATATAGAGGGCACCTGGAGAGTTCTAATCAGCATATTGCTGGACCATCTTCCTTTAATTACAATGGTTTGCTATTGGTTTCTGAAATTAGTATGTTTCTATTCAGTTGCCCTATTATTCTTCCACGGGAGAGTGAGCCTGTGCTGTTGGGTGTTGCCATTGTTGGTGCTGTAGCTGCAAGGAAATATTTTAGTTTGCATGATGCCATCAAGGCCCTGAATGCTTCGGGGAAAGTGCGGGTTTGGTCAAGAAAAAAGGCATCAAAGGATTATTTGTACAAAGTAGAAGTAAGGAGCCATTCCTTGTTGATGCTTGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002218 GO:0002221 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0002757 GO:0002758 GO:0002764 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009814 GO:0009816 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0031347 GO:0031349 GO:0036211 GO:0038023 GO:0042742 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045087 GO:0045088 GO:0045089 GO:0046777 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0080134 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

210

Amino Acids

22.72

Weight (kDa)

8.26

Isoelectric Point (pI)

37.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014822)

Species	Orthologous Gene IDs
malus_domestica	MD07G1169000.v1.1
pyrus_communis	pycom04g10240 pycom04g10280 pycom07g17520
rosa_chinensis	RchiOBHm_Chr3g0494801
rosa_laevigata	RLG00000033638
rosa_roxburghii	Rroxscaffold_7G00212040
rosa_rugosa	Rorug02G0020600 Rorug04G0064300 Rorug04G0225700 Rorug05G0033200 Rorug05G0076800 Rorug05G0322500
rosa_samantha	Rh1CG303900 Rh2DG229100 Rh3BG288000 Rh6BG143800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	144
AccB1I	GGYRCC	1 cut(s)	324
AccII	CGCG	1 cut(s)	246
AciI	CCGC	2 cut(s)	71, 550
AcoI	YGGCCR	1 cut(s)	78
AcsI	RAATTY	2 cut(s)	175, 268
AfaI	GTAC	1 cut(s)	590
AfiI	CCNNNNNNNGG	1 cut(s)	146
AgsI	TTSAA	1 cut(s)	169
AjnI	CCWGG	1 cut(s)	327
AjuI	GAANNNNNNNTTGG	2 cut(s)	288, 320
AluBI	AGCT	3 cut(s)	210, 257, 488
AluI	AGCT	3 cut(s)	210, 257, 488
Alw26I	GTCTC	1 cut(s)	19
AoxI	GGCC	3 cut(s)	35, 78, 525
ApeKI	GCWGC	5 cut(s)	207, 224, 254, 257, 488
ApoI	RAATTY	2 cut(s)	175, 268
AspS9I	GGNCC	3 cut(s)	35, 356, 526
AsuHPI	GGTGA	1 cut(s)	305
AvaII	GGWCC	1 cut(s)	356
BaeGI	GKGCMC	1 cut(s)	327
BalI	TGGCCA	1 cut(s)	80
BanI	GGYRCC	1 cut(s)	324
BbvI	GCAGC	5 cut(s)	219, 236, 244, 266, 475
BccI	CCATC	5 cut(s)	70, 71, 89, 367, 527
BciT130I	CCWGG	1 cut(s)	329
BclI	TGATCA	1 cut(s)	214
BcoDI	GTCTC	1 cut(s)	19
BfmI	CTRYAG	2 cut(s)	141, 483
BfuAI	ACCTGC	1 cut(s)	144
BglI	GCCNNNNNGGC	1 cut(s)	524
BisI	GCNGC	6 cut(s)	72, 208, 225, 255, 258, 489
BlsI	GCNGC	6 cut(s)	73, 209, 226, 256, 259, 490
Bme1390I	CCNGG	1 cut(s)	329
Bme18I	GGWCC	1 cut(s)	356
BmgT120I	GGNCC	3 cut(s)	35, 356, 526
BmiI	GGNNCC	2 cut(s)	326, 608
BmrFI	CCNGG	1 cut(s)	329
BmsI	GCATC	3 cut(s)	505, 581, 612
BpmI	CTGGAG	1 cut(s)	350
BsaBI	GATNNNNATC	1 cut(s)	80
BsaJI	CCNNGG	2 cut(s)	31, 437
Bsc4I	CCNNNNNNNGG	1 cut(s)	146
Bse3DI	GCAATG	1 cut(s)	219
Bse8I	GATNNNNATC	1 cut(s)	80
BseBI	CCWGG	1 cut(s)	329
BseDI	CCNNGG	2 cut(s)	31, 437
BseJI	GATNNNNATC	1 cut(s)	80
BseLI	CCNNNNNNNGG	1 cut(s)	146
BseMI	GCAATG	1 cut(s)	219
BseMII	CTCAG	1 cut(s)	61
BseSI	GKGCMC	1 cut(s)	327
BseXI	GCAGC	5 cut(s)	219, 236, 244, 266, 475
Bsh1236I	CGCG	1 cut(s)	246
BshFI	GGCC	3 cut(s)	37, 80, 527
BshNI	GGYRCC	1 cut(s)	324
BslI	CCNNNNNNNGG	1 cut(s)	146
BsmAI	GTCTC	1 cut(s)	19
BsmBI	CGTCTC	1 cut(s)	19
BsmI	GAATGC	1 cut(s)	538
BsnI	GGCC	3 cut(s)	37, 80, 527
Bsp1286I	GDGCHC	1 cut(s)	327
Bsp1407I	TGTACA	1 cut(s)	588
Bsp143I	GATC	1 cut(s)	214
Bsp19I	CCATGG	1 cut(s)	31
Bsp68I	TCGCGA	1 cut(s)	246
BspACI	CCGC	2 cut(s)	71, 550
BspANI	GGCC	3 cut(s)	37, 80, 527
BspCNI	CTCAG	1 cut(s)	60
BspFNI	CGCG	1 cut(s)	246
BspLI	GGNNCC	2 cut(s)	326, 608
BspMI	ACCTGC	1 cut(s)	144
BspT107I	GGYRCC	1 cut(s)	324
BsrDI	GCAATG	1 cut(s)	219
BsrGI	TGTACA	1 cut(s)	588
BssECI	CCNNGG	2 cut(s)	31, 437
BssMI	GATC	1 cut(s)	214
BssT1I	CCWWGG	1 cut(s)	31
Bst2UI	CCWGG	1 cut(s)	329
Bst4CI	ACNGT	1 cut(s)	98
Bst6I	CTCTTC	2 cut(s)	61, 147
BstAUI	TGTACA	1 cut(s)	588
BstDEI	CTNAG	3 cut(s)	47, 130, 198
BstDSI	CCRYGG	2 cut(s)	31, 437
BstENI	CCTNNNNNAGG	1 cut(s)	144
BstFNI	CGCG	1 cut(s)	246
BstKTI	GATC	1 cut(s)	217
BstMAI	GTCTC	1 cut(s)	19
BstMBI	GATC	1 cut(s)	214
BstMWI	GCNNNNNNNGC	4 cut(s)	77, 488, 524, 533
BstNI	CCWGG	1 cut(s)	329
BstSCI	CCNGG	1 cut(s)	327
BstSFI	CTRYAG	2 cut(s)	141, 483
BstSLI	GKGCMC	1 cut(s)	327
BstUI	CGCG	1 cut(s)	246
BstV1I	GCAGC	5 cut(s)	219, 236, 244, 266, 475
BsuRI	GGCC	3 cut(s)	37, 80, 527
BtgI	CCRYGG	2 cut(s)	31, 437
BtgZI	GCGATG	1 cut(s)	89
BtuMI	TCGCGA	1 cut(s)	246
BveI	ACCTGC	1 cut(s)	144
Cfr13I	GGNCC	3 cut(s)	35, 356, 526
Csp6I	GTAC	1 cut(s)	589
CviAII	CATG	2 cut(s)	32, 512
CviJI	RGCY	9 cut(s)	37, 51, 80, 210, 257, 451, 488, 527, 609
CviKI_1	RGCY	9 cut(s)	37, 51, 80, 210, 257, 451, 488, 527, 609
CviQI	GTAC	1 cut(s)	589
DdeI	CTNAG	3 cut(s)	47, 130, 198
DpnI	GATC	1 cut(s)	216
DpnII	GATC	1 cut(s)	214
EaeI	YGGCCR	1 cut(s)	78
Eam1104I	CTCTTC	2 cut(s)	61, 147
EarI	CTCTTC	2 cut(s)	61, 147
Eco130I	CCWWGG	1 cut(s)	31
Eco47I	GGWCC	1 cut(s)	356
EcoNI	CCTNNNNNAGG	1 cut(s)	144
EcoO109I	RGGNCCY	1 cut(s)	526
EcoRII	CCWGG	1 cut(s)	327
EcoT14I	CCWWGG	1 cut(s)	31
ErhI	CCWWGG	1 cut(s)	31
Esp3I	CGTCTC	1 cut(s)	19
FaeI	CATG	2 cut(s)	35, 515
FaiI	YATR	9 cut(s)	33, 143, 231, 316, 318, 348, 407, 513, 631
FatI	CATG	2 cut(s)	31, 511
FauI	CCCGC	1 cut(s)	543
FbaI	TGATCA	1 cut(s)	214
Fnu4HI	GCNGC	6 cut(s)	72, 208, 225, 255, 258, 489
Fsp4HI	GCNGC	6 cut(s)	72, 208, 225, 255, 258, 489
GluI	GCNGC	6 cut(s)	72, 208, 225, 255, 258, 489
GsuI	CTGGAG	1 cut(s)	350
HaeIII	GGCC	3 cut(s)	37, 80, 527
Hin1II	CATG	2 cut(s)	35, 515
HphI	GGTGA	1 cut(s)	305
Hpy188I	TCNGA	2 cut(s)	214, 397
Hpy188III	TCNNGA	2 cut(s)	245, 561
HpyAV	CCTTC	4 cut(s)	53, 163, 185, 290
HpyCH4III	ACNGT	1 cut(s)	98
HpyCH4V	TGCA	4 cut(s)	224, 260, 491, 511
HpyF10VI	GCNNNNNNNGC	4 cut(s)	77, 488, 524, 533
HpyF3I	CTNAG	3 cut(s)	47, 130, 198
Hsp92II	CATG	2 cut(s)	35, 515
Ksp22I	TGATCA	1 cut(s)	214
Kzo9I	GATC	1 cut(s)	214
LmnI	GCTCC	1 cut(s)	606
LpnPI	CCDG	6 cut(s)	149, 314, 339, 341, 465, 542
Lsp1109I	GCAGC	5 cut(s)	219, 236, 244, 266, 475
LweI	GCATC	3 cut(s)	505, 581, 612
MaeIII	GTNAC	1 cut(s)	98
MalI	GATC	1 cut(s)	216
MboI	GATC	1 cut(s)	214
MboII	GAAGA	4 cut(s)	48, 164, 354, 425
MhlI	GDGCHC	1 cut(s)	327
MlsI	TGGCCA	1 cut(s)	80
MluCI	AATT	6 cut(s)	117, 175, 248, 268, 370, 399
MluNI	TGGCCA	1 cut(s)	80
MnlI	CCTC	5 cut(s)	48, 61, 64, 293, 314
Mox20I	TGGCCA	1 cut(s)	80
MscI	TGGCCA	1 cut(s)	80
MseI	TTAA	2 cut(s)	185, 369
Msp20I	TGGCCA	1 cut(s)	80
MspA1I	CMGCKG	1 cut(s)	257
MspR9I	CCNGG	1 cut(s)	329
Mva1269I	GAATGC	1 cut(s)	538
MvaI	CCWGG	1 cut(s)	329
MvnI	CGCG	1 cut(s)	246
MwoI	GCNNNNNNNGC	4 cut(s)	77, 488, 524, 533
NcoI	CCATGG	1 cut(s)	31
NdeII	GATC	1 cut(s)	214
NlaIII	CATG	2 cut(s)	35, 515
NlaIV	GGNNCC	2 cut(s)	326, 608
NruI	TCGCGA	1 cut(s)	246
PctI	GAATGC	1 cut(s)	538
PkrI	GCNGC	6 cut(s)	73, 209, 226, 256, 259, 490
Psp6I	CCWGG	1 cut(s)	327
PspGI	CCWGG	1 cut(s)	327
PspN4I	GGNNCC	2 cut(s)	326, 608
PspPI	GGNCC	3 cut(s)	35, 356, 526
PvuII	CAGCTG	1 cut(s)	257
RruI	TCGCGA	1 cut(s)	246
RsaI	GTAC	1 cut(s)	590
RsaNI	GTAC	1 cut(s)	589
SaqAI	TTAA	2 cut(s)	185, 369
SatI	GCNGC	6 cut(s)	72, 208, 225, 255, 258, 489
Sau3AI	GATC	1 cut(s)	214
Sau96I	GGNCC	3 cut(s)	35, 356, 526
ScrFI	CCNGG	1 cut(s)	329
SduI	GDGCHC	1 cut(s)	327
SetI	ASST	8 cut(s)	113, 138, 163, 212, 259, 304, 330, 490
SfaNI	GCATC	3 cut(s)	505, 581, 612
SfcI	CTRYAG	2 cut(s)	141, 483
SinI	GGWCC	1 cut(s)	356
Sse9I	AATT	6 cut(s)	117, 175, 248, 268, 370, 399
SsiI	CCGC	2 cut(s)	71, 550
SspI	AATATT	1 cut(s)	500
StyD4I	CCNGG	1 cut(s)	327
StyI	CCWWGG	1 cut(s)	31
TaaI	ACNGT	1 cut(s)	98
TaqI	TCGA	1 cut(s)	66
TasI	AATT	6 cut(s)	117, 175, 248, 268, 370, 399
TatI	WGTACW	1 cut(s)	588
TauI	GCSGC	1 cut(s)	74
Tru1I	TTAA	2 cut(s)	185, 369
Tru9I	TTAA	2 cut(s)	185, 369
TseI	GCWGC	5 cut(s)	207, 224, 254, 257, 488
TspDTI	ATGAA	1 cut(s)	153
VpaK11BI	GGWCC	1 cut(s)	356
XagI	CCTNNNNNAGG	1 cut(s)	144
XapI	RAATTY	2 cut(s)	175, 268

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.