Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0014822

Physical Location & Seq

Genomic Coordinates Forward (+)

13074354 .. 13075614

Gene Structure 1261 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g10280.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGGGTTGGATGATGATTCCCTGTTTCGGTAATTCCAACGGTAAAGCAAAAACAAAGAAGAAAAGGAAGAACAAGATTGAGTTGCAGGTTAAGCCACTTGATCAGATCGAACCCACTTCAGGTTTTTCAAAGACTAGTTCCATTTTGAGTGTCAAGGAGGATCCAAAAGATGAGAGGGTCGATCACATTGCAGCACAGACTTTTGTATTCCGTGAATTGGCAGCTGCAACTAGAAATTTCAGGCCACAATGTCTTTTGGGTGGAGGTGGATTTGGCCGAGTATTCAAAGGACGTTGGAAAAGTACAAATCAGGTAGTAGCTATCAAACAACTTGATCGTGATGGATTACAAGGGAACAGGGAATTCCTTGTTGAAGTGTTGATGTTGAGTCTTCTTCACCACCCCAATCTTGTTAATCTTATTGGTTATTGTGCGGATGGATCGATCAAAGGCTTCTTGTTTATGAATATATGCCCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002218 GO:0002221 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0002757 GO:0002758 GO:0002764 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009814 GO:0009816 GO:0009966 GO:0009967 GO:0009987 GO:0010646 GO:0010647 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023051 GO:0023052 GO:0023056 GO:0031347 GO:0031349 GO:0036211 GO:0038023 GO:0042742 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045087 GO:0045088 GO:0045089 GO:0046777 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0080134 GO:0098542 GO:0140096 GO:1900457 GO:1900459 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

160

Amino Acids

17.78

Weight (kDa)

9.73

Isoelectric Point (pI)

35.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014822)

Species	Orthologous Gene IDs
malus_domestica	MD07G1169000.v1.1
pyrus_communis	pycom04g10240 pycom04g10280 pycom07g17520
rosa_chinensis	RchiOBHm_Chr3g0494801
rosa_laevigata	RLG00000033638
rosa_roxburghii	Rroxscaffold_7G00212040
rosa_rugosa	Rorug02G0020600 Rorug04G0064300 Rorug04G0225700 Rorug05G0033200 Rorug05G0076800 Rorug05G0322500
rosa_samantha	Rh1CG303900 Rh2DG229100 Rh3BG288000 Rh6BG143800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	76
AciI	CCGC	1 cut(s)	434
AclWI	GGATC	3 cut(s)	155, 168, 448
AcoI	YGGCCR	1 cut(s)	274
AcsI	RAATTY	2 cut(s)	235, 362
AcuI	CTGAAG	1 cut(s)	102
AfaI	GTAC	1 cut(s)	304
AfiI	CCNNNNNNNGG	3 cut(s)	26, 119, 217
AgsI	TTSAA	3 cut(s)	129, 286, 374
AhlI	ACTAGT	1 cut(s)	134
AluBI	AGCT	2 cut(s)	224, 320
AluI	AGCT	2 cut(s)	224, 320
AlwI	GGATC	3 cut(s)	155, 168, 448
AoxI	GGCC	2 cut(s)	242, 274
ApeKI	GCWGC	3 cut(s)	191, 221, 224
ApoI	RAATTY	2 cut(s)	235, 362
AsuHPI	GGTGA	1 cut(s)	389
BamHI	GGATCC	1 cut(s)	160
BbsI	GAAGAC	1 cut(s)	383
BbvI	GCAGC	3 cut(s)	203, 211, 233
BccI	CCATC	2 cut(s)	335, 431
BcgI	CGANNNNNNTGC	2 cut(s)	170, 204
BclI	TGATCA	1 cut(s)	100
BcuI	ACTAGT	1 cut(s)	134
BfaI	CTAG	3 cut(s)	135, 231, 478
BfuAI	ACCTGC	1 cut(s)	76
BisI	GCNGC	3 cut(s)	192, 222, 225
BlsI	GCNGC	3 cut(s)	193, 223, 226
BmiI	GGNNCC	1 cut(s)	162
BpiI	GAAGAC	1 cut(s)	383
Bsa29I	ATCGAT	1 cut(s)	443
Bsc4I	CCNNNNNNNGG	3 cut(s)	26, 119, 217
Bse3DI	GCAATG	1 cut(s)	186
BseCI	ATCGAT	1 cut(s)	443
BseGI	GGATG	2 cut(s)	15, 442
BseLI	CCNNNNNNNGG	3 cut(s)	26, 119, 217
BseMI	GCAATG	1 cut(s)	186
BseXI	GCAGC	3 cut(s)	203, 211, 233
BshFI	GGCC	2 cut(s)	244, 276
BshVI	ATCGAT	1 cut(s)	443
BslI	CCNNNNNNNGG	3 cut(s)	26, 119, 217
BsnI	GGCC	2 cut(s)	244, 276
Bsp143I	GATC	7 cut(s)	100, 105, 160, 181, 334, 440, 444
BspACI	CCGC	1 cut(s)	434
BspANI	GGCC	2 cut(s)	244, 276
BspDI	ATCGAT	1 cut(s)	443
BspLI	GGNNCC	1 cut(s)	162
BspMI	ACCTGC	1 cut(s)	76
BspPI	GGATC	3 cut(s)	155, 168, 448
BsrDI	GCAATG	1 cut(s)	186
BssMI	GATC	7 cut(s)	100, 105, 160, 181, 334, 440, 444
Bst4CI	ACNGT	1 cut(s)	41
BstF5I	GGATG	2 cut(s)	15, 442
BstKTI	GATC	7 cut(s)	103, 108, 163, 184, 337, 443, 447
BstMBI	GATC	7 cut(s)	100, 105, 160, 181, 334, 440, 444
BstMWI	GCNNNNNNNGC	1 cut(s)	91
BstV1I	GCAGC	3 cut(s)	203, 211, 233
BstV2I	GAAGAC	1 cut(s)	383
BstX2I	RGATCY	1 cut(s)	160
BstYI	RGATCY	1 cut(s)	160
Bsu15I	ATCGAT	1 cut(s)	443
BsuRI	GGCC	2 cut(s)	244, 276
BsuTUI	ATCGAT	1 cut(s)	443
BtsCI	GGATG	2 cut(s)	15, 442
BveI	ACCTGC	1 cut(s)	76
ClaI	ATCGAT	1 cut(s)	443
Csp6I	GTAC	1 cut(s)	303
CviJI	RGCY	6 cut(s)	94, 224, 244, 276, 320, 453
CviKI_1	RGCY	6 cut(s)	94, 224, 244, 276, 320, 453
CviQI	GTAC	1 cut(s)	303
DpnI	GATC	7 cut(s)	102, 107, 162, 183, 336, 442, 446
DpnII	GATC	7 cut(s)	100, 105, 160, 181, 334, 440, 444
EaeI	YGGCCR	1 cut(s)	274
Eco57I	CTGAAG	1 cut(s)	102
EcoRI	GAATTC	1 cut(s)	362
FaiI	YATR	3 cut(s)	464, 470, 472
FbaI	TGATCA	1 cut(s)	100
Fnu4HI	GCNGC	3 cut(s)	192, 222, 225
FokI	GGATG	2 cut(s)	22, 449
Fsp4HI	GCNGC	3 cut(s)	192, 222, 225
FspBI	CTAG	3 cut(s)	135, 231, 478
GluI	GCNGC	3 cut(s)	192, 222, 225
HaeIII	GGCC	2 cut(s)	244, 276
HinfI	GANTC	2 cut(s)	16, 388
HphI	GGTGA	1 cut(s)	389
Hpy188I	TCNGA	1 cut(s)	105
Hpy188III	TCNNGA	1 cut(s)	338
HpyCH4III	ACNGT	1 cut(s)	41
HpyCH4IV	ACGT	1 cut(s)	292
HpyCH4V	TGCA	3 cut(s)	85, 191, 227
HpyF10VI	GCNNNNNNNGC	1 cut(s)	91
HpySE526I	ACGT	1 cut(s)	292
Ksp22I	TGATCA	1 cut(s)	100
Kzo9I	GATC	7 cut(s)	100, 105, 160, 181, 334, 440, 444
LpnPI	CCDG	6 cut(s)	34, 71, 105, 226, 296, 343
Lsp1109I	GCAGC	3 cut(s)	203, 211, 233
MaeI	CTAG	3 cut(s)	135, 231, 478
MaeII	ACGT	1 cut(s)	292
MalI	GATC	7 cut(s)	102, 107, 162, 183, 336, 442, 446
MboI	GATC	7 cut(s)	100, 105, 160, 181, 334, 440, 444
MboII	GAAGA	4 cut(s)	70, 79, 383, 386
MflI	RGATCY	1 cut(s)	160
MluCI	AATT	4 cut(s)	31, 215, 235, 362
MlyI	GAGTC	1 cut(s)	397
MmeI	TCCRAC	2 cut(s)	60, 275
MnlI	CCTC	3 cut(s)	151, 168, 257
MseI	TTAA	2 cut(s)	90, 414
MspA1I	CMGCKG	1 cut(s)	224
MwoI	GCNNNNNNNGC	1 cut(s)	91
NdeII	GATC	7 cut(s)	100, 105, 160, 181, 334, 440, 444
NlaIV	GGNNCC	1 cut(s)	162
NmeAIII	GCCGAG	1 cut(s)	302
PfeI	GAWTC	1 cut(s)	16
PkrI	GCNGC	3 cut(s)	193, 223, 226
PleI	GAGTC	1 cut(s)	396
PpsI	GAGTC	1 cut(s)	396
PspN4I	GGNNCC	1 cut(s)	162
PsuI	RGATCY	1 cut(s)	160
PvuII	CAGCTG	1 cut(s)	224
RsaI	GTAC	1 cut(s)	304
RsaNI	GTAC	1 cut(s)	303
SaqAI	TTAA	2 cut(s)	90, 414
SatI	GCNGC	3 cut(s)	192, 222, 225
Sau3AI	GATC	7 cut(s)	100, 105, 160, 181, 334, 440, 444
SchI	GAGTC	1 cut(s)	397
SetI	ASST	7 cut(s)	90, 124, 226, 268, 295, 315, 322
SpeI	ACTAGT	1 cut(s)	134
Sse9I	AATT	4 cut(s)	31, 215, 235, 362
SsiI	CCGC	1 cut(s)	434
SspMI	CTAG	3 cut(s)	135, 231, 478
TaaI	ACNGT	1 cut(s)	41
TaiI	ACGT	1 cut(s)	295
TaqI	TCGA	3 cut(s)	108, 180, 443
TasI	AATT	4 cut(s)	31, 215, 235, 362
TatI	WGTACW	1 cut(s)	302
TfiI	GAWTC	1 cut(s)	16
Tru1I	TTAA	2 cut(s)	90, 414
Tru9I	TTAA	2 cut(s)	90, 414
TseI	GCWGC	3 cut(s)	191, 221, 224
TspDTI	ATGAA	1 cut(s)	479
TspGWI	ACGGA	1 cut(s)	200
XapI	RAATTY	2 cut(s)	235, 362
XspI	CTAG	3 cut(s)	135, 231, 478

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.