Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0014822

Physical Location & Seq

Genomic Coordinates Forward (+)

20070825 .. 20072701

Gene Structure 1877 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g17520.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

ATGTTATCAAGTTTTGGAGGTCTGTCAGAATTTAACCAACTCTGCCTCTCAAGCAATACAAAGGTAAAAAACTCACTAAGAGGTGGAAGAGAAGCCATGAGTTGGTTCCTGTGTTCCGGCGAGTTAAGCAGTAAAGCTGCAAAGAAGAAGAAGATCAAGAAGAACAAGCCAGAAGATCAGATCTCATCAATTTCAGAAAAACTGAAGGAAAATTCAGGACTGTCTGTAAAGGAGGCTTCTAAGGACGGAGGCTCTGGTCACATTGCAGCACATACATTTACATTTCGAGAATTGGCAGTGGCAACAAAGAACTTTCGAGCAGATTGTATTTTAGGTGAAGGAGGTTTTGGTCAAGTTTATAAGGGGCGCTTGGAGAGCACGAATCAGGTAGTGGCCATAAAGCAACTTGATTCCAATGGGCTTCAAGGGAACAGGGAATTCCTCGTCGAAGTATTAATGTTGAGCCTACTTCACCATCCCAATCTTGTGAACTTAGTAGGCTATTGTGCTGATGGGGATCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002218 GO:0002221 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0002757 GO:0002758 GO:0002764 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009814 GO:0009816 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0031347 GO:0031349 GO:0036211 GO:0038023 GO:0042742 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045087 GO:0045088 GO:0045089 GO:0046777 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0080134 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

175

Amino Acids

18.84

Weight (kDa)

9.05

Isoelectric Point (pI)

23.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014822)

Species	Orthologous Gene IDs
malus_domestica	MD07G1169000.v1.1
pyrus_communis	pycom04g10240 pycom04g10280 pycom07g17520
rosa_chinensis	RchiOBHm_Chr3g0494801
rosa_laevigata	RLG00000033638
rosa_roxburghii	Rroxscaffold_7G00212040
rosa_rugosa	Rorug02G0020600 Rorug04G0064300 Rorug04G0225700 Rorug05G0033200 Rorug05G0076800 Rorug05G0322500
rosa_samantha	Rh1CG303900 Rh2DG229100 Rh3BG288000 Rh6BG143800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	360
AccB7I	CCANNNNNTGG	1 cut(s)	102
AclWI	GGATC	1 cut(s)	512
AcoI	YGGCCR	1 cut(s)	393
AcsI	RAATTY	3 cut(s)	29, 211, 437
AcuI	CTGAAG	1 cut(s)	224
AfiI	CCNNNNNNNGG	1 cut(s)	102
AgsI	TTSAA	1 cut(s)	425
AjuI	GAANNNNNNNTTGG	2 cut(s)	330, 362
AluBI	AGCT	1 cut(s)	137
AluI	AGCT	1 cut(s)	137
Alw21I	GWGCWC	1 cut(s)	380
AlwI	GGATC	1 cut(s)	512
AoxI	GGCC	1 cut(s)	393
ApeKI	GCWGC	2 cut(s)	137, 266
ApoI	RAATTY	3 cut(s)	29, 211, 437
AseI	ATTAAT	1 cut(s)	455
AspLEI	GCGC	1 cut(s)	369
AsuHPI	GGTGA	2 cut(s)	347, 464
BalI	TGGCCA	1 cut(s)	395
BamHI	GGATCC	1 cut(s)	517
Bbv12I	GWGCWC	1 cut(s)	380
BbvI	GCAGC	2 cut(s)	124, 278
BccI	CCATC	2 cut(s)	483, 506
BfoI	RGCGCY	1 cut(s)	370
BglII	AGATCT	1 cut(s)	180
BisI	GCNGC	2 cut(s)	138, 267
BlsI	GCNGC	2 cut(s)	139, 268
BmiI	GGNNCC	2 cut(s)	107, 519
BpuEI	CTTGAG	1 cut(s)	34
BsaBI	GATNNNNATC	1 cut(s)	516
Bsc4I	CCNNNNNNNGG	1 cut(s)	102
Bse3DI	GCAATG	1 cut(s)	261
Bse8I	GATNNNNATC	1 cut(s)	516
BseGI	GGATG	1 cut(s)	475
BseJI	GATNNNNATC	1 cut(s)	516
BseLI	CCNNNNNNNGG	1 cut(s)	102
BseMI	GCAATG	1 cut(s)	261
BseXI	GCAGC	2 cut(s)	124, 278
BshFI	GGCC	1 cut(s)	395
BsiHKAI	GWGCWC	1 cut(s)	380
BsiSI	CCGG	1 cut(s)	117
BslI	CCNNNNNNNGG	1 cut(s)	102
BsnI	GGCC	1 cut(s)	395
Bsp1286I	GDGCHC	1 cut(s)	380
Bsp143I	GATC	4 cut(s)	153, 175, 180, 517
BspANI	GGCC	1 cut(s)	395
BspLI	GGNNCC	2 cut(s)	107, 519
BspPI	GGATC	1 cut(s)	512
BsrDI	GCAATG	1 cut(s)	261
BssMI	GATC	4 cut(s)	153, 175, 180, 517
Bst4CI	ACNGT	1 cut(s)	222
Bst6I	CTCTTC	1 cut(s)	82
BstDEI	CTNAG	3 cut(s)	77, 240, 493
BstF5I	GGATG	1 cut(s)	475
BstH2I	RGCGCY	1 cut(s)	370
BstHHI	GCGC	1 cut(s)	369
BstKTI	GATC	4 cut(s)	156, 178, 183, 520
BstMBI	GATC	4 cut(s)	153, 175, 180, 517
BstMWI	GCNNNNNNNGC	3 cut(s)	51, 126, 375
BstV1I	GCAGC	2 cut(s)	124, 278
BstX2I	RGATCY	2 cut(s)	180, 517
BstYI	RGATCY	2 cut(s)	180, 517
BsuRI	GGCC	1 cut(s)	395
BtsCI	GGATG	1 cut(s)	475
BtsI	GCAGTG	1 cut(s)	303
BtsIMutI	CAGTG	1 cut(s)	303
CfoI	GCGC	1 cut(s)	369
CviAII	CATG	1 cut(s)	97
CviJI	RGCY	9 cut(s)	95, 137, 169, 236, 252, 395, 421, 465, 501
CviKI_1	RGCY	9 cut(s)	95, 137, 169, 236, 252, 395, 421, 465, 501
DdeI	CTNAG	3 cut(s)	77, 240, 493
DpnI	GATC	4 cut(s)	155, 177, 182, 519
DpnII	GATC	4 cut(s)	153, 175, 180, 517
EaeI	YGGCCR	1 cut(s)	393
Eam1104I	CTCTTC	1 cut(s)	82
EarI	CTCTTC	1 cut(s)	82
Eco57I	CTGAAG	1 cut(s)	224
EcoRI	GAATTC	1 cut(s)	437
FaeI	CATG	1 cut(s)	100
FaiI	YATR	4 cut(s)	98, 273, 360, 398
FalI	AAGNNNNNCTT	2 cut(s)	353, 385
FatI	CATG	1 cut(s)	96
Fnu4HI	GCNGC	2 cut(s)	138, 267
FokI	GGATG	1 cut(s)	462
Fsp4HI	GCNGC	2 cut(s)	138, 267
GlaI	GCGC	1 cut(s)	368
GluI	GCNGC	2 cut(s)	138, 267
HaeII	RGCGCY	1 cut(s)	370
HaeIII	GGCC	1 cut(s)	395
HapII	CCGG	1 cut(s)	117
HhaI	GCGC	1 cut(s)	369
Hin1II	CATG	1 cut(s)	100
Hin6I	GCGC	1 cut(s)	367
HinP1I	GCGC	1 cut(s)	367
HinfI	GANTC	2 cut(s)	382, 410
HpaII	CCGG	1 cut(s)	117
HphI	GGTGA	2 cut(s)	347, 464
Hpy166II	GTNNAC	1 cut(s)	490
Hpy188I	TCNGA	3 cut(s)	28, 180, 196
Hpy188III	TCNNGA	3 cut(s)	157, 216, 287
Hpy8I	GTNNAC	1 cut(s)	490
Hpy99I	CGWCG	1 cut(s)	449
HpyAV	CCTTC	2 cut(s)	199, 332
HpyCH4III	ACNGT	1 cut(s)	222
HpyCH4V	TGCA	2 cut(s)	140, 266
HpyF10VI	GCNNNNNNNGC	3 cut(s)	51, 126, 375
HpyF3I	CTNAG	3 cut(s)	77, 240, 493
Hsp92II	CATG	1 cut(s)	100
HspAI	GCGC	1 cut(s)	367
Kzo9I	GATC	4 cut(s)	153, 175, 180, 517
LpnPI	CCDG	7 cut(s)	122, 130, 183, 201, 240, 371, 418
Lsp1109I	GCAGC	2 cut(s)	124, 278
MaeIII	GTNAC	1 cut(s)	257
MalI	GATC	4 cut(s)	155, 177, 182, 519
MboI	GATC	4 cut(s)	153, 175, 180, 517
MboII	GAAGA	6 cut(s)	99, 157, 160, 163, 172, 185
MflI	RGATCY	2 cut(s)	180, 517
MhlI	GDGCHC	1 cut(s)	380
MlsI	TGGCCA	1 cut(s)	395
MluCI	AATT	5 cut(s)	29, 189, 211, 290, 437
MluNI	TGGCCA	1 cut(s)	395
MnlI	CCTC	7 cut(s)	11, 56, 74, 226, 242, 335, 452
Mox20I	TGGCCA	1 cut(s)	395
MscI	TGGCCA	1 cut(s)	395
MseI	TTAA	4 cut(s)	33, 125, 455, 523
Msp20I	TGGCCA	1 cut(s)	395
MspI	CCGG	1 cut(s)	117
MwoI	GCNNNNNNNGC	3 cut(s)	51, 126, 375
NdeII	GATC	4 cut(s)	153, 175, 180, 517
NlaIII	CATG	1 cut(s)	100
NlaIV	GGNNCC	2 cut(s)	107, 519
NmuCI	GTSAC	1 cut(s)	257
PfeI	GAWTC	2 cut(s)	382, 410
PflMI	CCANNNNNTGG	1 cut(s)	102
PkrI	GCNGC	2 cut(s)	139, 268
PshBI	ATTAAT	1 cut(s)	455
PsiI	TTATAA	1 cut(s)	360
PspN4I	GGNNCC	2 cut(s)	107, 519
PsuI	RGATCY	2 cut(s)	180, 517
SaqAI	TTAA	4 cut(s)	33, 125, 455, 523
SatI	GCNGC	2 cut(s)	138, 267
Sau3AI	GATC	4 cut(s)	153, 175, 180, 517
SduI	GDGCHC	1 cut(s)	380
SetI	ASST	7 cut(s)	22, 66, 85, 139, 337, 346, 390
SmlI	CTYRAG	1 cut(s)	49
SmoI	CTYRAG	1 cut(s)	49
Sse9I	AATT	5 cut(s)	29, 189, 211, 290, 437
TaaI	ACNGT	1 cut(s)	222
TaqI	TCGA	3 cut(s)	286, 316, 447
TasI	AATT	5 cut(s)	29, 189, 211, 290, 437
TfiI	GAWTC	2 cut(s)	382, 410
Tru1I	TTAA	4 cut(s)	33, 125, 455, 523
Tru9I	TTAA	4 cut(s)	33, 125, 455, 523
TscAI	CASTG	1 cut(s)	303
TseFI	GTSAC	1 cut(s)	257
TseI	GCWGC	2 cut(s)	137, 266
Tsp45I	GTSAC	1 cut(s)	257
TspGWI	ACGGA	1 cut(s)	261
TspRI	CASTG	1 cut(s)	303
Van91I	CCANNNNNTGG	1 cut(s)	102
VspI	ATTAAT	1 cut(s)	455
XapI	RAATTY	3 cut(s)	29, 211, 437

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.