Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0014822

Physical Location & Seq

Genomic Coordinates Forward (+)

28723176 .. 28764341

Gene Structure 41166 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG288000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

ATGAACAAACCTGGAAGCTTAGATAAATGGATCCTGAATCTCTCTTTTTTCTCTAGCCGATTTGCTTTAATATACTGTAATGAATTTTCGCCGAAATATCAAGTGAAGGAAAATTCGGCATTAAAGGAAGGGTCTAAGGGTAGCAGCTCTGATCACATTGCAGCACATACATTTACATTTCGCGAATTGGCAGCTGCAACAAAGAATTTTAGAGCAGATTGTTTTGTGGGTGAAGGAGGTTTTGGTCAAGTATATAGAGGGCACCTGGAGAGTTCTAATCAGGGTGCTACTCCAATGGATCAAACGAGTATCCCAGAGGGGTGTGAGCAAATATTTATGATATCAGAAGCTACCTCAAATACTCGGAAGGAGGACTTGGCTTGGGCTACGTACATTTTGTTGCGCAATACAAACAGCATATCAGTGATTCTGGACTCTGGGAGATGCTACCCAAGGGGACTCGTTCACTTCTCGTACAACCAGTGCTGCAAGTTTTGCACCCAAATGACTTGTTCGGGATTTGTCTTGTTGGCTTCAAGCATGAGGTATGCATATAGTGATAAAGATAGAGCCTGGGCTGGAGCTCTTGCAAACAAATTCAGAGGCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009507 GO:0009536 GO:0009987 GO:0010190 GO:0016043 GO:0017004 GO:0022607 GO:0034622 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044424 GO:0044444 GO:0044464 GO:0065003 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CCB2_CCB4

Protein Analysis

203

Amino Acids

22.64

Weight (kDa)

8.76

Isoelectric Point (pI)

20.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CCB2_CCB4	PF11152	84 - 154	3.8e-09	Cofactor assembly of complex C subunit B, CCB2/CCB4
CCB2_CCB4	PF11152	162 - 200	3.7e-06	Cofactor assembly of complex C subunit B, CCB2/CCB4

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014822)

Species	Orthologous Gene IDs
malus_domestica	MD07G1169000.v1.1
pyrus_communis	pycom04g10240 pycom04g10280 pycom07g17520
rosa_chinensis	RchiOBHm_Chr3g0494801
rosa_laevigata	RLG00000033638
rosa_roxburghii	Rroxscaffold_7G00212040
rosa_rugosa	Rorug02G0020600 Rorug04G0064300 Rorug04G0225700 Rorug05G0033200 Rorug05G0076800 Rorug05G0322500
rosa_samantha	Rh1CG303900 Rh2DG229100 Rh3BG288000 Rh6BG143800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	404
AccB1I	GGYRCC	1 cut(s)	261
AccII	CGCG	1 cut(s)	183
AclWI	GGATC	3 cut(s)	25, 38, 306
AcsI	RAATTY	4 cut(s)	83, 112, 205, 596
AfaI	GTAC	2 cut(s)	392, 476
AgsI	TTSAA	1 cut(s)	537
AjnI	CCWGG	3 cut(s)	10, 264, 572
AjuI	GAANNNNNNNTTGG	4 cut(s)	225, 257, 359, 391
AluBI	AGCT	5 cut(s)	18, 147, 194, 350, 584
AluI	AGCT	5 cut(s)	18, 147, 194, 350, 584
Alw21I	GWGCWC	1 cut(s)	586
AlwI	GGATC	3 cut(s)	25, 38, 306
ApeKI	GCWGC	5 cut(s)	144, 161, 191, 194, 486
ApoI	RAATTY	4 cut(s)	83, 112, 205, 596
AspLEI	GCGC	1 cut(s)	405
AsuHPI	GGTGA	1 cut(s)	242
BaeGI	GKGCMC	1 cut(s)	264
BamHI	GGATCC	1 cut(s)	30
BanI	GGYRCC	1 cut(s)	261
BanII	GRGCYC	1 cut(s)	586
Bbv12I	GWGCWC	1 cut(s)	586
BbvI	GCAGC	5 cut(s)	156, 173, 181, 203, 473
BciT130I	CCWGG	3 cut(s)	12, 266, 574
BciVI	GTATCC	1 cut(s)	320
BclI	TGATCA	1 cut(s)	151
BfaI	CTAG	1 cut(s)	54
BfuI	GTATCC	1 cut(s)	320
BisI	GCNGC	5 cut(s)	145, 162, 192, 195, 487
BlsI	GCNGC	5 cut(s)	146, 163, 193, 196, 488
Bme1390I	CCNGG	3 cut(s)	12, 266, 574
BmiI	GGNNCC	2 cut(s)	32, 263
BmrFI	CCNGG	3 cut(s)	12, 266, 574
BmsI	GCATC	1 cut(s)	434
BpmI	CTGGAG	2 cut(s)	287, 600
BsaAI	YACGTR	1 cut(s)	390
BsaJI	CCNNGG	2 cut(s)	452, 573
Bse1I	ACTGG	1 cut(s)	481
Bse3DI	GCAATG	1 cut(s)	156
BseBI	CCWGG	3 cut(s)	12, 266, 574
BseDI	CCNNGG	2 cut(s)	452, 573
BseMI	GCAATG	1 cut(s)	156
BseNI	ACTGG	1 cut(s)	481
BseSI	GKGCMC	1 cut(s)	264
BseXI	GCAGC	5 cut(s)	156, 173, 181, 203, 473
Bsh1236I	CGCG	1 cut(s)	183
BshNI	GGYRCC	1 cut(s)	261
BsiHKAI	GWGCWC	1 cut(s)	586
BslFI	GGGAC	1 cut(s)	471
BsmFI	GGGAC	1 cut(s)	471
Bsp1286I	GDGCHC	2 cut(s)	264, 586
Bsp143I	GATC	3 cut(s)	30, 151, 298
Bsp68I	TCGCGA	1 cut(s)	183
BspFNI	CGCG	1 cut(s)	183
BspLI	GGNNCC	2 cut(s)	32, 263
BspPI	GGATC	3 cut(s)	25, 38, 306
BspT107I	GGYRCC	1 cut(s)	261
BsrDI	GCAATG	1 cut(s)	156
BsrI	ACTGG	1 cut(s)	481
BssECI	CCNNGG	2 cut(s)	452, 573
BssMI	GATC	3 cut(s)	30, 151, 298
BssT1I	CCWWGG	1 cut(s)	452
Bst2UI	CCWGG	3 cut(s)	12, 266, 574
Bst4CI	ACNGT	1 cut(s)	77
BstAPI	GCANNNNNTGC	1 cut(s)	495
BstBAI	YACGTR	1 cut(s)	390
BstDEI	CTNAG	2 cut(s)	19, 135
BstFNI	CGCG	1 cut(s)	183
BstHHI	GCGC	1 cut(s)	405
BstKTI	GATC	3 cut(s)	33, 154, 301
BstMBI	GATC	3 cut(s)	30, 151, 298
BstMWI	GCNNNNNNNGC	1 cut(s)	495
BstNI	CCWGG	3 cut(s)	12, 266, 574
BstSCI	CCNGG	3 cut(s)	10, 264, 572
BstSLI	GKGCMC	1 cut(s)	264
BstSNI	TACGTA	1 cut(s)	390
BstUI	CGCG	1 cut(s)	183
BstV1I	GCAGC	5 cut(s)	156, 173, 181, 203, 473
BstX2I	RGATCY	1 cut(s)	30
BstYI	RGATCY	1 cut(s)	30
BsuI	GTATCC	1 cut(s)	320
BtsIMutI	CAGTG	2 cut(s)	429, 488
BtuMI	TCGCGA	1 cut(s)	183
CfoI	GCGC	1 cut(s)	405
Csp6I	GTAC	2 cut(s)	391, 475
CviAII	CATG	1 cut(s)	541
CviQI	GTAC	2 cut(s)	391, 475
DdeI	CTNAG	2 cut(s)	19, 135
DpnI	GATC	3 cut(s)	32, 153, 300
DpnII	GATC	3 cut(s)	30, 151, 298
Ecl136II	GAGCTC	1 cut(s)	584
Eco105I	TACGTA	1 cut(s)	390
Eco130I	CCWWGG	1 cut(s)	452
Eco24I	GRGCYC	1 cut(s)	586
Eco32I	GATATC	1 cut(s)	342
Eco53kI	GAGCTC	1 cut(s)	584
EcoICRI	GAGCTC	1 cut(s)	584
EcoRII	CCWGG	3 cut(s)	10, 264, 572
EcoRV	GATATC	1 cut(s)	342
EcoT14I	CCWWGG	1 cut(s)	452
EcoT22I	ATGCAT	1 cut(s)	553
EcoT38I	GRGCYC	1 cut(s)	586
ErhI	CCWWGG	1 cut(s)	452
FaeI	CATG	1 cut(s)	544
FalI	AAGNNNNNCTT	2 cut(s)	359, 391
FaqI	GGGAC	1 cut(s)	471
FatI	CATG	1 cut(s)	540
FbaI	TGATCA	1 cut(s)	151
Fnu4HI	GCNGC	5 cut(s)	145, 162, 192, 195, 487
FriOI	GRGCYC	1 cut(s)	586
Fsp4HI	GCNGC	5 cut(s)	145, 162, 192, 195, 487
FspBI	CTAG	1 cut(s)	54
FspI	TGCGCA	1 cut(s)	404
GlaI	GCGC	1 cut(s)	404
GluI	GCNGC	5 cut(s)	145, 162, 192, 195, 487
GsuI	CTGGAG	2 cut(s)	287, 600
HhaI	GCGC	1 cut(s)	405
Hin1II	CATG	1 cut(s)	544
Hin6I	GCGC	1 cut(s)	403
HinP1I	GCGC	1 cut(s)	403
HindIII	AAGCTT	1 cut(s)	16
HinfI	GANTC	4 cut(s)	37, 427, 434, 459
HphI	GGTGA	1 cut(s)	242
Hpy166II	GTNNAC	1 cut(s)	466
Hpy188I	TCNGA	4 cut(s)	151, 346, 366, 602
Hpy188III	TCNNGA	4 cut(s)	34, 182, 431, 516
Hpy8I	GTNNAC	1 cut(s)	466
HpyAV	CCTTC	4 cut(s)	100, 122, 227, 361
HpyCH4III	ACNGT	1 cut(s)	77
HpyCH4IV	ACGT	1 cut(s)	389
HpyCH4V	TGCA	6 cut(s)	161, 197, 489, 498, 551, 590
HpyF10VI	GCNNNNNNNGC	1 cut(s)	495
HpyF3I	CTNAG	2 cut(s)	19, 135
HpySE526I	ACGT	1 cut(s)	389
Hsp92II	CATG	1 cut(s)	544
HspAI	GCGC	1 cut(s)	403
Ksp22I	TGATCA	1 cut(s)	151
Kzo9I	GATC	3 cut(s)	30, 151, 298
LmnI	GCTCC	1 cut(s)	581
Lsp1109I	GCAGC	5 cut(s)	156, 173, 181, 203, 473
LweI	GCATC	1 cut(s)	434
MaeI	CTAG	1 cut(s)	54
MaeII	ACGT	1 cut(s)	389
MalI	GATC	3 cut(s)	32, 153, 300
MboI	GATC	3 cut(s)	30, 151, 298
MflI	RGATCY	1 cut(s)	30
MhlI	GDGCHC	2 cut(s)	264, 586
MluCI	AATT	5 cut(s)	83, 112, 185, 205, 596
MlyI	GAGTC	2 cut(s)	428, 453
MnlI	CCTC	7 cut(s)	230, 251, 310, 364, 364, 537, 596
Mph1103I	ATGCAT	1 cut(s)	553
MseI	TTAA	2 cut(s)	68, 122
MslI	CAYNNNNRTG	2 cut(s)	422, 503
MspA1I	CMGCKG	1 cut(s)	194
MspR9I	CCNGG	3 cut(s)	12, 266, 574
MvaI	CCWGG	3 cut(s)	12, 266, 574
MvnI	CGCG	1 cut(s)	183
MwoI	GCNNNNNNNGC	1 cut(s)	495
NdeII	GATC	3 cut(s)	30, 151, 298
NlaIII	CATG	1 cut(s)	544
NlaIV	GGNNCC	2 cut(s)	32, 263
NruI	TCGCGA	1 cut(s)	183
NsbI	TGCGCA	1 cut(s)	404
NsiI	ATGCAT	1 cut(s)	553
PfeI	GAWTC	2 cut(s)	37, 427
PkrI	GCNGC	5 cut(s)	146, 163, 193, 196, 488
PleI	GAGTC	2 cut(s)	428, 453
PpsI	GAGTC	2 cut(s)	428, 453
Ppu21I	YACGTR	1 cut(s)	390
Psp124BI	GAGCTC	1 cut(s)	586
Psp6I	CCWGG	3 cut(s)	10, 264, 572
PspGI	CCWGG	3 cut(s)	10, 264, 572
PspN4I	GGNNCC	2 cut(s)	32, 263
PsuI	RGATCY	1 cut(s)	30
PvuII	CAGCTG	1 cut(s)	194
RruI	TCGCGA	1 cut(s)	183
RsaI	GTAC	2 cut(s)	392, 476
RsaNI	GTAC	2 cut(s)	391, 475
RseI	CAYNNNNRTG	2 cut(s)	422, 503
SacI	GAGCTC	1 cut(s)	586
SaqAI	TTAA	2 cut(s)	68, 122
SatI	GCNGC	5 cut(s)	145, 162, 192, 195, 487
Sau3AI	GATC	3 cut(s)	30, 151, 298
SchI	GAGTC	2 cut(s)	428, 453
ScrFI	CCNGG	3 cut(s)	12, 266, 574
SduI	GDGCHC	2 cut(s)	264, 586
SfaNI	GCATC	1 cut(s)	434
SmiMI	CAYNNNNRTG	2 cut(s)	422, 503
SnaBI	TACGTA	1 cut(s)	390
Sse9I	AATT	5 cut(s)	83, 112, 185, 205, 596
SspI	AATATT	1 cut(s)	333
SspMI	CTAG	1 cut(s)	54
SstI	GAGCTC	1 cut(s)	586
StyD4I	CCNGG	3 cut(s)	10, 264, 572
StyI	CCWWGG	1 cut(s)	452
TaaI	ACNGT	1 cut(s)	77
TaiI	ACGT	1 cut(s)	392
TasI	AATT	5 cut(s)	83, 112, 185, 205, 596
TfiI	GAWTC	2 cut(s)	37, 427
Tru1I	TTAA	2 cut(s)	68, 122
Tru9I	TTAA	2 cut(s)	68, 122
TscAI	CASTG	2 cut(s)	429, 488
TseI	GCWGC	5 cut(s)	144, 161, 191, 194, 486
TspDTI	ATGAA	2 cut(s)	17, 96
TspRI	CASTG	2 cut(s)	429, 488
XapI	RAATTY	4 cut(s)	83, 112, 205, 596
XspI	CTAG	1 cut(s)	54
Zsp2I	ATGCAT	1 cut(s)	553

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.