Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0014822

Physical Location & Seq

Genomic Coordinates Reverse (-)

6588201 .. 6589579

Gene Structure 1379 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0076800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1038 bp

ATGGATTTCAAAAGAAACCATGTGATCAGTGCCATATTCATCATCTTGGGGACTTCAGCTTCTCAAGCCACATCCCGTGCATTGTACGAATCTTCCATTGCCGAAAAACATGAGCAATGGATGGCAAAGCACGGCCGCGTTTACCACGACAGTGCAGAGAAAGAAAGGCGTTTTGCCATCTTCAGGAAGAATGTCGAATTCGTGGAGAAGTTCAACAAAGAAGGGAACAAGACTTACAAGTTGAGCATCAACAAGTTCTCTGATATGACCAATGAAGAATTCATGAGACATCATACCGGATACAAAATGTCAACCAGCTCAAACACTTCAACCTCATTCAAAAGTAACTATTTTCAGTACCAAAGCTTGGCTGCTACTGATATTCCAACTAGCATGGACTGGAGGGAACAACAAGCTGTCACCGGCATAAAGGATCAAGGTCGATGTGGTGCTTGCTGGGCATTTACAGTAGTGGCAGCTGTGGAAGGGCTAACCAAAATCAAAACTGGCAAATTGATCTCGCTCTCTGAGCAGCAACTTGTGGACTGCACTCAACAGAACAATGGGTGCAGCGGTGGTAGCTTAGAAAGCGCCTACGAGTACGTTATACAAAACAGAGGAATCGCTCGCGAAGATACTTACCAATACCAGAGCACTGACATGGGAACATGCGACGCTAACAAGGAAAGTGAGCATGCTGCACAGATCACTGGTTATGAACAAGTCCCTTCCAGAAGTGAAAACGATCTACTCAAGGCTGTCTCCATGCAACCAGTCTCGGTTAGCATTGCTGCTTATGGAACAGAGTTTCAGCACTACGGCAGTGATGTGTTCTCTGGCGATTGTGGAACACACCTCGACCACGCCGTCACAGCCATTGGCTACGGGACGACTGAAGATGGAACCCCCTATTGGTTACTGAAGAACTCATGGGGCGAACAGTGGGGTGAAAGTGGGTATATGAGAATTCTTAGAAACAGTGATGCCCCAGAAGGTATGTGCGGCCTCGCTATGAATGCTTTCTATCCGACTGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_C48 Transposase_24

Protein Analysis

345

Amino Acids

38.55

Weight (kDa)

5.72

Isoelectric Point (pI)

35.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Inhibitor_I29	PF08246	37 - 94	5.9e-21	Cathepsin propeptide inhibitor domain (I29)
Peptidase_C1	PF00112	128 - 344	5.9e-77	Papain family cysteine protease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014822)

Species	Orthologous Gene IDs
malus_domestica	MD07G1169000.v1.1
pyrus_communis	pycom04g10240 pycom04g10280 pycom07g17520
rosa_chinensis	RchiOBHm_Chr3g0494801
rosa_laevigata	RLG00000033638
rosa_roxburghii	Rroxscaffold_7G00212040
rosa_rugosa	Rorug02G0020600 Rorug04G0064300 Rorug04G0225700 Rorug05G0033200 Rorug05G0076800 Rorug05G0322500
rosa_samantha	Rh1CG303900 Rh2DG229100 Rh3BG288000 Rh6BG143800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	866
AccB7I	CCANNNNNTGG	1 cut(s)	367
AccII	CGCG	2 cut(s)	138, 630
AciI	CCGC	3 cut(s)	136, 573, 1002
AclWI	GGATC	1 cut(s)	441
AcoI	YGGCCR	1 cut(s)	133
AcsI	RAATTY	3 cut(s)	197, 278, 966
AcuI	CTGAAG	4 cut(s)	39, 166, 915, 941
AfaI	GTAC	3 cut(s)	86, 359, 602
AfiI	CCNNNNNNNGG	3 cut(s)	183, 367, 912
AgsI	TTSAA	4 cut(s)	10, 214, 330, 340
AjuI	GAANNNNNNNTTGG	4 cut(s)	263, 295, 895, 927
AleI	CACNNNNGTG	1 cut(s)	150
AluBI	AGCT	6 cut(s)	59, 318, 366, 416, 479, 582
AluI	AGCT	6 cut(s)	59, 318, 366, 416, 479, 582
Alw21I	GWGCWC	1 cut(s)	656
Alw26I	GTCTC	3 cut(s)	280, 766, 781
AlwI	GGATC	1 cut(s)	441
AoxI	GGCC	2 cut(s)	133, 1003
ApeKI	GCWGC	6 cut(s)	371, 476, 532, 570, 698, 791
ApoI	RAATTY	3 cut(s)	197, 278, 966
Asp700I	GAANNNNTTC	1 cut(s)	1019
AspLEI	GCGC	1 cut(s)	593
AsuHPI	GGTGA	2 cut(s)	412, 959
Bbv12I	GWGCWC	1 cut(s)	656
BbvI	GCAGC	6 cut(s)	358, 488, 544, 582, 685, 778
BccI	CCATC	3 cut(s)	115, 185, 893
BceAI	ACGGC	3 cut(s)	148, 835, 851
BciVI	GTATCC	1 cut(s)	293
BclI	TGATCA	1 cut(s)	24
BcoDI	GTCTC	3 cut(s)	280, 766, 781
BfaI	CTAG	1 cut(s)	390
BfoI	RGCGCY	1 cut(s)	594
BfuI	GTATCC	1 cut(s)	293
BisI	GCNGC	8 cut(s)	136, 372, 477, 533, 571, 699, 792, 1003
BlsI	GCNGC	8 cut(s)	137, 373, 478, 534, 572, 700, 793, 1004
BmiI	GGNNCC	1 cut(s)	904
BmsI	GCATC	2 cut(s)	255, 973
BpmI	CTGGAG	1 cut(s)	421
BpuEI	CTTGAG	2 cut(s)	48, 737
BsaWI	WCCGGW	1 cut(s)	296
Bsc4I	CCNNNNNNNGG	3 cut(s)	183, 367, 912
Bse118I	RCCGGY	1 cut(s)	422
Bse1I	ACTGG	4 cut(s)	404, 511, 715, 773
Bse3DI	GCAATG	3 cut(s)	96, 122, 786
BseGI	GGATG	2 cut(s)	71, 126
BseLI	CCNNNNNNNGG	3 cut(s)	183, 367, 912
BseMI	GCAATG	3 cut(s)	96, 122, 786
BseMII	CTCAG	1 cut(s)	519
BseNI	ACTGG	4 cut(s)	404, 511, 715, 773
BseX3I	CGGCCG	1 cut(s)	133
BseXI	GCAGC	6 cut(s)	358, 488, 544, 582, 685, 778
BseYI	CCCAGC	1 cut(s)	456
BsgI	GTGCAG	4 cut(s)	174, 532, 589, 684
Bsh1236I	CGCG	2 cut(s)	138, 630
Bsh1285I	CGRYCG	1 cut(s)	136
BshFI	GGCC	2 cut(s)	135, 1005
BsiEI	CGRYCG	1 cut(s)	136
BsiHKAI	GWGCWC	1 cut(s)	656
BsiSI	CCGG	2 cut(s)	297, 423
BslFI	GGGAC	3 cut(s)	64, 710, 901
BslI	CCNNNNNNNGG	3 cut(s)	183, 367, 912
BsmAI	GTCTC	3 cut(s)	280, 766, 781
BsmFI	GGGAC	3 cut(s)	64, 710, 901
BsmI	GAATGC	1 cut(s)	1021
BsnI	GGCC	2 cut(s)	135, 1005
Bsp1286I	GDGCHC	1 cut(s)	656
Bsp143I	GATC	5 cut(s)	24, 433, 516, 705, 745
Bsp68I	TCGCGA	1 cut(s)	630
BspACI	CCGC	3 cut(s)	136, 573, 1002
BspANI	GGCC	2 cut(s)	135, 1005
BspCNI	CTCAG	1 cut(s)	520
BspFNI	CGCG	2 cut(s)	138, 630
BspHI	TCATGA	1 cut(s)	282
BspLI	GGNNCC	1 cut(s)	904
BspPI	GGATC	1 cut(s)	441
BsrDI	GCAATG	3 cut(s)	96, 122, 786
BsrFI	RCCGGY	1 cut(s)	422
BsrI	ACTGG	4 cut(s)	404, 511, 715, 773
BssAI	RCCGGY	1 cut(s)	422
BssMI	GATC	5 cut(s)	24, 433, 516, 705, 745
Bst4CI	ACNGT	4 cut(s)	152, 469, 942, 980
BstC8I	GCNNGC	3 cut(s)	454, 628, 696
BstDEI	CTNAG	3 cut(s)	528, 583, 971
BstF5I	GGATG	2 cut(s)	71, 126
BstFNI	CGCG	2 cut(s)	138, 630
BstH2I	RGCGCY	1 cut(s)	594
BstHHI	GCGC	1 cut(s)	593
BstKTI	GATC	5 cut(s)	27, 436, 519, 708, 748
BstMAI	GTCTC	3 cut(s)	280, 766, 781
BstMBI	GATC	5 cut(s)	24, 433, 516, 705, 745
BstMCI	CGRYCG	1 cut(s)	136
BstMWI	GCNNNNNNNGC	7 cut(s)	65, 458, 529, 579, 588, 872, 1016
BstNSI	RCATGY	2 cut(s)	672, 698
BstUI	CGCG	2 cut(s)	138, 630
BstV1I	GCAGC	6 cut(s)	358, 488, 544, 582, 685, 778
BstZI	CGGCCG	1 cut(s)	133
BsuI	GTATCC	1 cut(s)	293
BsuRI	GGCC	2 cut(s)	135, 1005
BtsCI	GGATG	2 cut(s)	71, 126
BtsI	GCAGTG	1 cut(s)	829
BtsIMutI	CAGTG	7 cut(s)	34, 157, 654, 708, 829, 947, 985
BtuMI	TCGCGA	1 cut(s)	630
Cac8I	GCNNGC	3 cut(s)	454, 628, 696
CciI	TCATGA	1 cut(s)	282
CfoI	GCGC	1 cut(s)	593
Cfr10I	RCCGGY	1 cut(s)	422
CseI	GACGC	1 cut(s)	683
Csp6I	GTAC	3 cut(s)	85, 358, 601
CviAII	CATG	9 cut(s)	20, 110, 283, 394, 661, 669, 695, 766, 930
CviQI	GTAC	3 cut(s)	85, 358, 601
DdeI	CTNAG	3 cut(s)	528, 583, 971
DpnI	GATC	5 cut(s)	26, 435, 518, 707, 747
DpnII	GATC	5 cut(s)	24, 433, 516, 705, 745
DrdI	GACNNNNNNGTC	1 cut(s)	866
DseDI	GACNNNNNNGTC	1 cut(s)	866
EaeI	YGGCCR	1 cut(s)	133
EagI	CGGCCG	1 cut(s)	133
EclXI	CGGCCG	1 cut(s)	133
Eco52I	CGGCCG	1 cut(s)	133
Eco57I	CTGAAG	4 cut(s)	39, 166, 915, 941
EcoRI	GAATTC	3 cut(s)	197, 278, 966
FaeI	CATG	9 cut(s)	23, 113, 286, 397, 664, 672, 698, 769, 933
FaqI	GGGAC	3 cut(s)	64, 710, 901
FatI	CATG	9 cut(s)	19, 109, 282, 393, 660, 668, 694, 765, 929
FbaI	TGATCA	1 cut(s)	24
Fnu4HI	GCNGC	8 cut(s)	136, 372, 477, 533, 571, 699, 792, 1003
FokI	GGATG	2 cut(s)	58, 133
Fsp4HI	GCNGC	8 cut(s)	136, 372, 477, 533, 571, 699, 792, 1003
FspBI	CTAG	1 cut(s)	390
GlaI	GCGC	1 cut(s)	592
GluI	GCNGC	8 cut(s)	136, 372, 477, 533, 571, 699, 792, 1003
GsaI	CCCAGC	1 cut(s)	460
GsuI	CTGGAG	1 cut(s)	421
HaeII	RGCGCY	1 cut(s)	594
HaeIII	GGCC	2 cut(s)	135, 1005
HapII	CCGG	2 cut(s)	297, 423
HgaI	GACGC	1 cut(s)	683
HhaI	GCGC	1 cut(s)	593
Hin1II	CATG	9 cut(s)	23, 113, 286, 397, 664, 672, 698, 769, 933
Hin6I	GCGC	1 cut(s)	591
HinP1I	GCGC	1 cut(s)	591
HincII	GTYRAC	1 cut(s)	312
HindII	GTYRAC	1 cut(s)	312
HindIII	AAGCTT	1 cut(s)	364
HinfI	GANTC	2 cut(s)	89, 621
HpaII	CCGG	2 cut(s)	297, 423
HphI	GGTGA	2 cut(s)	412, 959
Hpy166II	GTNNAC	3 cut(s)	142, 312, 544
Hpy188I	TCNGA	3 cut(s)	262, 529, 1029
Hpy188III	TCNNGA	4 cut(s)	184, 283, 629, 732
Hpy8I	GTNNAC	3 cut(s)	142, 312, 544
Hpy99I	CGWCG	1 cut(s)	677
HpyAV	CCTTC	4 cut(s)	215, 479, 738, 986
HpyCH4III	ACNGT	4 cut(s)	152, 469, 942, 980
HpyCH4IV	ACGT	1 cut(s)	603
HpyCH4V	TGCA	7 cut(s)	80, 155, 549, 570, 701, 769, 1034
HpyF10VI	GCNNNNNNNGC	7 cut(s)	65, 458, 529, 579, 588, 872, 1016
HpyF3I	CTNAG	3 cut(s)	528, 583, 971
HpySE526I	ACGT	1 cut(s)	603
Hsp92II	CATG	9 cut(s)	23, 113, 286, 397, 664, 672, 698, 769, 933
HspAI	GCGC	1 cut(s)	591
Ksp22I	TGATCA	1 cut(s)	24
Kzo9I	GATC	5 cut(s)	24, 433, 516, 705, 745
Lsp1109I	GCAGC	6 cut(s)	358, 488, 544, 582, 685, 778
LweI	GCATC	2 cut(s)	255, 973
MaeI	CTAG	1 cut(s)	390
MaeII	ACGT	1 cut(s)	603
MaeIII	GTNAC	4 cut(s)	344, 418, 868, 915
MalI	GATC	5 cut(s)	26, 435, 518, 707, 747
MboI	GATC	5 cut(s)	24, 433, 516, 705, 745
MboII	GAAGA	7 cut(s)	84, 172, 199, 287, 644, 908, 934
MhlI	GDGCHC	1 cut(s)	656
MluCI	AATT	4 cut(s)	197, 278, 512, 966
MmeI	TCCRAC	1 cut(s)	410
MnlI	CCTC	5 cut(s)	343, 396, 611, 866, 1016
MroXI	GAANNNNTTC	1 cut(s)	1019
MslI	CAYNNNNRTG	2 cut(s)	150, 659
MspA1I	CMGCKG	2 cut(s)	479, 573
MspI	CCGG	2 cut(s)	297, 423
Mva1269I	GAATGC	1 cut(s)	1021
MvnI	CGCG	2 cut(s)	138, 630
MwoI	GCNNNNNNNGC	7 cut(s)	65, 458, 529, 579, 588, 872, 1016
NdeII	GATC	5 cut(s)	24, 433, 516, 705, 745
NlaIII	CATG	9 cut(s)	23, 113, 286, 397, 664, 672, 698, 769, 933
NlaIV	GGNNCC	1 cut(s)	904
NmuCI	GTSAC	2 cut(s)	418, 868
NruI	TCGCGA	1 cut(s)	630
NspI	RCATGY	2 cut(s)	672, 698
OliI	CACNNNNGTG	1 cut(s)	150
PaeI	GCATGC	1 cut(s)	698
PagI	TCATGA	1 cut(s)	282
PcsI	WCGNNNNNNNCGW	1 cut(s)	864
PctI	GAATGC	1 cut(s)	1021
PdmI	GAANNNNTTC	1 cut(s)	1019
PfeI	GAWTC	2 cut(s)	89, 621
PflMI	CCANNNNNTGG	1 cut(s)	367
PkrI	GCNGC	8 cut(s)	137, 373, 478, 534, 572, 700, 793, 1004
PspFI	CCCAGC	1 cut(s)	456
PspN4I	GGNNCC	1 cut(s)	904
PsrI	GAACNNNNNNTAC	2 cut(s)	218, 250
PvuII	CAGCTG	1 cut(s)	479
RruI	TCGCGA	1 cut(s)	630
RsaI	GTAC	3 cut(s)	86, 359, 602
RsaNI	GTAC	3 cut(s)	85, 358, 601
RseI	CAYNNNNRTG	2 cut(s)	150, 659
SatI	GCNGC	8 cut(s)	136, 372, 477, 533, 571, 699, 792, 1003
Sau3AI	GATC	5 cut(s)	24, 433, 516, 705, 745
SduI	GDGCHC	1 cut(s)	656
SfaNI	GCATC	2 cut(s)	255, 973
SmiMI	CAYNNNNRTG	2 cut(s)	150, 659
SmlI	CTYRAG	2 cut(s)	63, 752
SmoI	CTYRAG	2 cut(s)	63, 752
SphI	GCATGC	1 cut(s)	698
Sse9I	AATT	4 cut(s)	197, 278, 512, 966
SsiI	CCGC	3 cut(s)	136, 573, 1002
SspMI	CTAG	1 cut(s)	390
TaaI	ACNGT	4 cut(s)	152, 469, 942, 980
TaiI	ACGT	1 cut(s)	606
TaqI	TCGA	3 cut(s)	195, 442, 858
TasI	AATT	4 cut(s)	197, 278, 512, 966
TauI	GCSGC	2 cut(s)	138, 1005
TfiI	GAWTC	2 cut(s)	89, 621
TscAI	CASTG	7 cut(s)	34, 157, 661, 715, 829, 947, 985
TseFI	GTSAC	2 cut(s)	418, 868
TseI	GCWGC	6 cut(s)	371, 476, 532, 570, 698, 791
Tsp45I	GTSAC	2 cut(s)	418, 868
TspDTI	ATGAA	5 cut(s)	28, 271, 288, 732, 1028
TspRI	CASTG	7 cut(s)	34, 157, 661, 715, 829, 947, 985
Van91I	CCANNNNNTGG	1 cut(s)	367
XapI	RAATTY	3 cut(s)	197, 278, 966
XceI	RCATGY	2 cut(s)	672, 698
XmnI	GAANNNNTTC	1 cut(s)	1019
XspI	CTAG	1 cut(s)	390

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.