Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0011056

Physical Location & Seq

Genomic Coordinates Forward (+)

35044515 .. 35050998

Gene Structure 6484 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1289800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3225 bp

ATGATTATCAAGAAGAATCTCAAATCCCAAATGCCGAGTCTGAAACGGTGCAGGCTCGGCGAGTCACCGGGTGAGGACGACGATAACTCGGGTAGGAAGAAGAGGAAGACTAATGGGTATTACCTTCTCAATCTGCTCGGCGAGGTCGCCGCCGGTATTATCCCCGTCAACCTCCACGGCTTGCTCGGCTCAGTTGGGGCCGCTGGTATTATCCCCGAAGTGTCCTGCTCCCCCGAGGATGAGTCGAAATCGAAGCACAGAGAGTCAGCCGCCACAGCGAAGACGGAGGTTTCGCGGCCGCCACTGGTGAGGACGTCGCGGGGCCGAGTTCAGGTACTTCCTTCTCGGTTTAATGACTCGGTTATTGAGAATTGGAAGAAAGAAAGTAAGACAAGTGTAAGAGATTGTAGTTTAGATGAGGAGATTGAATGTAAAAAAGAGAAACCTAGCTTTAAAGCCCCGAAATTTGTTAGCCAAAATGCGAAAAAGATGAGAAGTGTGGATAGAATTGGATATAACAGTAAGAAGTATTCGGCTTTGTGCGAAGAAGATGAAGACGAGGAAGTTGAGGGGAGTGTGCCGTTTAAGAGTTTCGATATTAGAAAGTATTCAACGTCACCAAGCACACTTTCGTCAATGCGTAAGCAAATGGTTGAAGATGACAAGCGTGCAGTTGTGGAAATTGATGAAGAAGATGGTTTAGTGGGGACAGTGAAGGCTGCAAAGGAGAATGGCGAGAGGAAAGATGGGTTGTATGGACCTGAAGATTTCTATTCGGGTGATACAGTGTGGGCAATGCCTGGGAAAAATGAGCCTTTCTGGCCTGCCATTGTCATTGATCCAATGTCGCAAGCGCCTGAGCTAGTTTTGAGGGCTTGCATCCCCGATGCAGCTTGTGTGATGTTCTTTGGATACTCTGGGAATGGGAGTCAACGGGATTATGCTTGGGTTGAACGTGGCAAGATTTTTCCCTTTATGGATTATGTGGACAGGTTCCAGGAGCAGCCTGAATTGAACAGTTGTGAGCCCTGTGAATTCCAGATGGCAATTGAGGAGGCATTTTTGGTGGAACAAGGATTTACAGAAAAGTTGATAGCAGATATAAATATGGCAGCAATGTACGATGATTCTCTACAGAGAGGGGTTCAAGAGGCTACCGGTTCAAATCATGATCTGGAACAGGATGTATCTGGGAAGAAGAATGACATAAGACCCTGTGAAGGCTGTGGCTTGTATGTTCCTTTTAAAATGATAAAGAAAATGAAGGATCCAGCTTCCGGAGGCCAATATCTTTGTAAATTGTGTGCTAGGTTAGTAAAATCAAAACATTATTGTGGGATATGCAAGAAGATTTGGAATCATTCAGACAGTGGAAGTTGGGTTCGATGTGATGGTTGTAAAGTGTGGGTGCATGCAGAATGTGACAAAATCTCCAGCAACCATTTTAAGAATTTGGGAGGCACTGACTACTACTGCCCAACTTGCAAAGTCAAGTTTAATTTTGAATTATCAGATTCTGAAAAGGGACAAGCAAATGTAAAATGGAGTAAAAATAATGGTCAGTTGGCGCTTCCTAACAAGGTTACTGTTCTTTGCAACGGCGTGGAAGGCATTTATTTTCCAAGTCTTCACTCTGTTGTGTGCAAGTGCGGCTTCTGTGGGGCAGAAAAGCAAGCACTTAGTGAATGGGAGCGACACACAGGTTCCAAATCGAGAGATTGGAGGACTAGTGTCAGGGTGAAAGGTTCCTTACTGCCACTGGAACAATGGATGCTGCAGTTAGCAGAGTATCATGAAAATGCTCTCGTGTCTTCTAAACCTCCTAAACGGCCTTCTATTAAAGAACGAAAGCAGAAGTTGCTTACTTTTTTGCAAGAAAAGTATGAACCTGTTCATGCCAAGTGGACAACAGAACGATGCGCTGTATGTAGATGGGTTGAAGATTGGGACTACAACAAAATCATCATCTGCAACAGATGTCAGATAGCCGTCCATCAAGAATGCTATGGAGCAAGAAATGTTCGGGATTTTACTTCGTGGGTTTGCAAAGCATGTGAAACGCCCGAAGTCAAGCGAGAATGTTGCCTCTGTCCTGTAAAAGGAGGTGCTTTAAAGCCAACTGATATTGACGCGTTGTGGGTTCATATTACATGTGCTTGGTTCAGACCCGAAGTCTCTTTTGCGAGTGATGAAAAGATGGAGCCTGCTCTTGGGATCTTGAGTATTCCATCAAATTCTTTTGTGAAGATTTGCGTTATCTGTAAGCAAATTCATGGTTCATGCATGCAATGTTGCAAGTGTTCCACTTATTACCATGCAATGTGTGCCTCACGAGCAGGTTATCGCATGGAGTTGCACAGTTTGGAGAAAAATGGAAAGCAGACCACAAAAATGGTTTCTTACTGTGCTTATCACAGGGCCCCAAATCCAGATACTGTTTTAATCATACAGACTCCTCTAGGAGTGTTTTCAACGAAAAGCCTTCTCCAAAATAAGAAGCCTGGTTCAAGGTTAATTTCATCTAATAGAACAAAGCTTGAAGAGGTTTTGACGGTTGAAACTACGGAGTCTGAGCCAGAGCCAGAGCCATTATCTGCTGCAAGATGCCGGGTATACAAAAGATTGAAAAATAACAAGAGAACCGAAGAAGAAATCGTTGCCCACCAAGTGAAGGGACCTTCCCATCATCCCTTGGAAGCAATTCGAAGTTTGAACACATTCAGGGTAGTAGAGGATCCTCCGACTTTTTCATCTTTTAGAGAACGGCTATACCATTTACAGAGAACCGAACACGATCGTGTTTGCTTTGGTAGATCTGGGATACATGGATGGGGTCTCTTTGCACGTAGAGACATACAAGAAGGAGAAATGGTTCTTGAATATCGGGGTGAACAGGTGAGACGTAGCGTTGCAGATCTTAGGGAGGCACGGTATAGATCAGAAGGCAAAGACTGTTATTTGTTTAAGATCAGTGAAGAAGTGGTGGTAGATGCCACTGATAAAGGCAATATAGCACGCCTGATCAACCATTCGTGCATGCCGAATTGCTACGCGAGGATCATGAGTGTGGGTGATGAAGAAAGCCGGATTGTACTTATTGCAAAGGCTGATGTAACATGCGGCGATGAGCTAACGTACGATTACTTGTTCGATCCGAACGAGCCTGACGAATTAAAAGTCCCGTGTCTATGTAAAGCTCCCAACTGTCGCAAATTCATGAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005911 GO:0008150 GO:0009292 GO:0009294 GO:0009506 GO:0009893 GO:0009987 GO:0010604 GO:0010638 GO:0019222 GO:0030054 GO:0031056 GO:0031058 GO:0031060 GO:0031062 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0032268 GO:0032270 GO:0033043 GO:0033044 GO:0044764 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051569 GO:0051571 GO:0051704 GO:0055044 GO:0060255 GO:0065007 GO:0080090 GO:1902275 GO:1905269 GO:2001252

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PHD PHD_2 PWWP SET zf-HC5HC2H_2

Protein Analysis

1075

Amino Acids

121.56

Weight (kDa)

8.09

Isoelectric Point (pI)

47.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PWWP	PF00855	260 - 353	8.4e-12	PWWP domain
PHD	PF00628	445 - 495	1e-06	PHD-finger
PHD_2	PF13831	652 - 686	7.8e-12	PHD-finger
zf-HC5HC2H_2	PF13832	693 - 805	2.1e-27	PHD-zinc-finger like domain
zf-HC5HC2H	PF13771	715 - 806	3.3e-13	PHD-like zinc-binding domain
SET	PF00856	943 - 1048	1.7e-24	SET domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011056)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27910 AT5G53430
fragaria_vesca	FvH4_7g31710 FvH4_7g31710
malus_domestica	MD01G1220300.v1.1 MD07G1289800.v1.1
prunus_persica	Prupe.2G311000_v2.0.a1
pyrus_communis	pycom01g22990 pycom07g26250
rosa_chinensis	RchiOBHm_Chr1g0380901
rosa_laevigata	RLG00000026264
rosa_multiflora	Rmu_sc0002962.1_g000020
rosa_roxburghii	Rroxscaffold_4G00278980
rosa_rugosa	Rorug01G0425200 Rorug01G0425300
rosa_samantha	Rh1AG449100 Rh1BG404800 Rh1CG418800 Rh1DG435200
rosa_wichuraiana	Rw1G039150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	317
Acc36I	ACCTGC	1 cut(s)	2327
AccI	GTMKAC	1 cut(s)	2613
AccII	CGCG	4 cut(s)	295, 319, 2132, 3053
AccIII	TCCGGA	1 cut(s)	1277
AciI	CCGC	8 cut(s)	150, 201, 270, 295, 299, 319, 1650, 3120
AclWI	GGATC	8 cut(s)	833, 1262, 1275, 2222, 2729, 2742, 3065, 3146
AcoI	YGGCCR	1 cut(s)	296
AcsI	RAATTY	6 cut(s)	464, 1034, 1450, 2233, 2268, 3212
AcuI	CTGAAG	1 cut(s)	783
AcyI	GRCGYC	1 cut(s)	314
AdeI	CACNNNGTG	3 cut(s)	71, 1682, 2668
AfaI	GTAC	4 cut(s)	336, 1121, 3093, 3137
AfiI	CCNNNNNNNGG	6 cut(s)	331, 1220, 1277, 2099, 2210, 2671
AflIII	ACRYGT	2 cut(s)	2130, 2150
AgeI	ACCGGT	1 cut(s)	1157
AhdI	GACNNNNNGTC	1 cut(s)	2171
AhlI	ACTAGT	1 cut(s)	1727
AjnI	CCWGG	3 cut(s)	799, 996, 2500
AjuI	GAANNNNNNNTTGG	2 cut(s)	613, 645
AleI	CACNNNNGTG	1 cut(s)	2796
AloI	GAACNNNNNNTCC	4 cut(s)	1365, 1397, 2856, 2888
AluBI	AGCT	7 cut(s)	450, 862, 893, 1274, 2536, 3130, 3197
AluI	AGCT	7 cut(s)	450, 862, 893, 1274, 2536, 3130, 3197
Alw26I	GTCTC	4 cut(s)	2179, 2840, 2844, 2893
AlwI	GGATC	8 cut(s)	833, 1262, 1275, 2222, 2729, 2742, 3065, 3146
AlwNI	CAGNNNCTG	2 cut(s)	1517, 2435
Ama87I	CYCGRG	2 cut(s)	88, 233
Aor13HI	TCCGGA	1 cut(s)	1277
AoxI	GGCC	7 cut(s)	198, 296, 322, 821, 1282, 1829, 2418
ApaI	GGGCCC	1 cut(s)	2422
ApeKI	GCWGC	6 cut(s)	719, 890, 1003, 1112, 1774, 2597
ApoI	RAATTY	6 cut(s)	464, 1034, 1450, 2233, 2268, 3212
ArsI	GACNNNNNNTTYG	6 cut(s)	22, 54, 274, 306, 3162, 3194
AsiGI	ACCGGT	1 cut(s)	1157
Asp700I	GAANNNNTTC	5 cut(s)	607, 1890, 2700, 2717, 2871
AspLEI	GCGC	3 cut(s)	856, 1570, 1922
AspS9I	GGNCC	6 cut(s)	198, 322, 758, 2418, 2419, 2675
AsuC2I	CCSGG	2 cut(s)	69, 2609
AsuHPI	GGTGA	9 cut(s)	57, 83, 319, 609, 791, 1750, 2900, 2908, 3083
AsuII	TTCGAA	1 cut(s)	2704
AvaI	CYCGRG	2 cut(s)	88, 233
AvaII	GGWCC	2 cut(s)	758, 2675
BaeGI	GKGCMC	1 cut(s)	2422
BamHI	GGATCC	2 cut(s)	1267, 2734
BanII	GRGCYC	2 cut(s)	1029, 2422
BauI	CACGAG	2 cut(s)	1805, 2331
BbsI	GAAGAC	5 cut(s)	113, 287, 561, 1619, 1803
BbvI	GCAGC	6 cut(s)	706, 902, 1015, 1124, 1761, 2584
BceAI	ACGGC	6 cut(s)	193, 565, 1615, 1844, 1973, 2780
BcgI	CGANNNNNNTGC	2 cut(s)	2064, 2098
BciT130I	CCWGG	3 cut(s)	801, 998, 2502
BciVI	GTATCC	2 cut(s)	905, 2814
BclI	TGATCA	1 cut(s)	3021
BcnI	CCSGG	2 cut(s)	69, 2609
BcoDI	GTCTC	4 cut(s)	2179, 2840, 2844, 2893
BcuI	ACTAGT	1 cut(s)	1727
BfaI	CTAG	5 cut(s)	447, 863, 1308, 1728, 2459
BfmI	CTRYAG	2 cut(s)	1133, 1775
BfoI	RGCGCY	2 cut(s)	857, 1571
BfuAI	ACCTGC	1 cut(s)	2327
BfuI	GTATCC	2 cut(s)	905, 2814
BglI	GCCNNNNNGGC	1 cut(s)	820
BglII	AGATCT	2 cut(s)	2813, 2914
Bme1390I	CCNGG	5 cut(s)	69, 801, 998, 2502, 2609
Bme18I	GGWCC	2 cut(s)	758, 2675
BmeRI	GACNNNNNGTC	1 cut(s)	2171
BmeT110I	CYCGRG	2 cut(s)	88, 233
BmgT120I	GGNCC	6 cut(s)	198, 322, 758, 2418, 2419, 2675
BmrFI	CCNGG	5 cut(s)	69, 801, 998, 2502, 2609
BmsI	GCATC	6 cut(s)	877, 888, 1761, 1907, 2594, 2980
BoxI	GACNNNNGTC	1 cut(s)	1730
BpiI	GAAGAC	5 cut(s)	113, 287, 561, 1619, 1803
BpmI	CTGGAG	1 cut(s)	1417
Bpu10I	CCTNAGC	1 cut(s)	858
Bpu14I	TTCGAA	1 cut(s)	2704
BpuEI	CTTGAG	1 cut(s)	2239
BpuMI	CCSGG	2 cut(s)	69, 2609
BsaAI	YACGTR	1 cut(s)	2846
BsaHI	GRCGYC	1 cut(s)	314
BsaI	GGTCTC	1 cut(s)	2840
BsaJI	CCNNGG	4 cut(s)	175, 234, 800, 2691
BsaWI	WCCGGW	2 cut(s)	1157, 1277
BsaXI	ACNNNNNCTCC	8 cut(s)	1415, 1445, 1714, 1744, 2856, 2886, 2915, 2945
Bsc4I	CCNNNNNNNGG	6 cut(s)	331, 1220, 1277, 2099, 2210, 2671
Bse118I	RCCGGY	2 cut(s)	152, 1157
Bse1I	ACTGG	2 cut(s)	309, 1764
Bse3DI	GCAATG	4 cut(s)	801, 1122, 2294, 2325
BseAI	TCCGGA	1 cut(s)	1277
BseBI	CCWGG	3 cut(s)	801, 998, 2502
BseDI	CCNNGG	4 cut(s)	175, 234, 800, 2691
BseGI	GGATG	6 cut(s)	244, 879, 1189, 1776, 2686, 2834
BseLI	CCNNNNNNNGG	6 cut(s)	331, 1220, 1277, 2099, 2210, 2671
BseMI	GCAATG	4 cut(s)	801, 1122, 2294, 2325
BseMII	CTCAG	3 cut(s)	204, 849, 2562
BseNI	ACTGG	2 cut(s)	309, 1764
BseRI	GAGGAG	3 cut(s)	434, 1067, 2445
BseSI	GKGCMC	1 cut(s)	2422
BseX3I	CGGCCG	1 cut(s)	296
BseXI	GCAGC	6 cut(s)	706, 902, 1015, 1124, 1761, 2584
BsgI	GTGCAG	2 cut(s)	70, 690
Bsh1236I	CGCG	4 cut(s)	295, 319, 2132, 3053
Bsh1285I	CGRYCG	2 cut(s)	299, 2797
BshFI	GGCC	7 cut(s)	200, 298, 324, 823, 1284, 1831, 2420
BshTI	ACCGGT	1 cut(s)	1157
BsiEI	CGRYCG	2 cut(s)	299, 2797
BsiHKCI	CYCGRG	2 cut(s)	88, 233
BsiSI	CCGG	6 cut(s)	68, 153, 1158, 1278, 2608, 3085
BsiWI	CGTACG	1 cut(s)	3135
BslFI	GGGAC	5 cut(s)	721, 1539, 1961, 2688, 3164
BslI	CCNNNNNNNGG	6 cut(s)	331, 1220, 1277, 2099, 2210, 2671
BsmAI	GTCTC	4 cut(s)	2179, 2840, 2844, 2893
BsmBI	CGTCTC	1 cut(s)	2893
BsmFI	GGGAC	5 cut(s)	721, 1539, 1961, 2688, 3164
BsmI	GAATGC	1 cut(s)	2006
BsnI	GGCC	7 cut(s)	200, 298, 324, 823, 1284, 1831, 2420
Bso31I	GGTCTC	1 cut(s)	2840
BsoBI	CYCGRG	2 cut(s)	88, 233
Bsp119I	TTCGAA	1 cut(s)	2704
Bsp120I	GGGCCC	1 cut(s)	2418
Bsp1286I	GDGCHC	2 cut(s)	1029, 2422
Bsp13I	TCCGGA	1 cut(s)	1277
BspACI	CCGC	8 cut(s)	150, 201, 270, 295, 299, 319, 1650, 3120
BspANI	GGCC	7 cut(s)	200, 298, 324, 823, 1284, 1831, 2420
BspCNI	CTCAG	3 cut(s)	203, 850, 2563
BspEI	TCCGGA	1 cut(s)	1277
BspFNI	CGCG	4 cut(s)	295, 319, 2132, 3053
BspHI	TCATGA	4 cut(s)	1168, 1792, 3060, 3216
BspMAI	CTGCAG	1 cut(s)	1779
BspMI	ACCTGC	1 cut(s)	2327
BspPI	GGATC	8 cut(s)	833, 1262, 1275, 2222, 2729, 2742, 3065, 3146
BspT104I	TTCGAA	1 cut(s)	2704
BspTNI	GGTCTC	1 cut(s)	2840
BsrDI	GCAATG	4 cut(s)	801, 1122, 2294, 2325
BsrFI	RCCGGY	2 cut(s)	152, 1157
BsrI	ACTGG	2 cut(s)	309, 1764
BssAI	RCCGGY	2 cut(s)	152, 1157
BssECI	CCNNGG	4 cut(s)	175, 234, 800, 2691
BssNAI	GTATAC	1 cut(s)	2614
BssNI	GRCGYC	1 cut(s)	314
BssSI	CACGAG	2 cut(s)	1805, 2331
BssT1I	CCWWGG	1 cut(s)	2691
Bst1107I	GTATAC	1 cut(s)	2614
Bst2BI	CACGAG	2 cut(s)	1805, 2331
Bst2UI	CCWGG	3 cut(s)	801, 998, 2502
Bst6I	CTCTTC	2 cut(s)	95, 2535
BstACI	GRCGYC	1 cut(s)	314
BstAPI	GCANNNNNTGC	2 cut(s)	1858, 2324
BstBAI	YACGTR	1 cut(s)	2846
BstBI	TTCGAA	1 cut(s)	2704
BstDEI	CTNAG	5 cut(s)	190, 858, 1679, 2571, 2918
BstDSI	CCRYGG	1 cut(s)	175
BstENI	CCTNNNNNAGG	1 cut(s)	2097
BstF5I	GGATG	6 cut(s)	244, 879, 1189, 1776, 2686, 2834
BstFNI	CGCG	4 cut(s)	295, 319, 2132, 3053
BstH2I	RGCGCY	2 cut(s)	857, 1571
BstHHI	GCGC	3 cut(s)	856, 1570, 1922
BstMAI	GTCTC	4 cut(s)	2179, 2840, 2844, 2893
BstMCI	CGRYCG	2 cut(s)	299, 2797
BstNI	CCWGG	3 cut(s)	801, 998, 2502
BstNSI	RCATGY	6 cut(s)	1415, 2055, 2154, 2287, 3040, 3120
BstPAI	GACNNNNGTC	1 cut(s)	1730
BstSCI	CCNGG	5 cut(s)	67, 799, 996, 2500, 2607
BstSFI	CTRYAG	2 cut(s)	1133, 1775
BstSLI	GKGCMC	1 cut(s)	2422
BstUI	CGCG	4 cut(s)	295, 319, 2132, 3053
BstV1I	GCAGC	6 cut(s)	706, 902, 1015, 1124, 1761, 2584
BstV2I	GAAGAC	5 cut(s)	113, 287, 561, 1619, 1803
BstX2I	RGATCY	5 cut(s)	1267, 2214, 2734, 2813, 2914
BstXI	CCANNNNNNTGG	1 cut(s)	2392
BstYI	RGATCY	5 cut(s)	1267, 2214, 2734, 2813, 2914
BstZ17I	GTATAC	1 cut(s)	2614
BstZI	CGGCCG	1 cut(s)	296
BsuI	GTATCC	2 cut(s)	905, 2814
BsuRI	GGCC	7 cut(s)	200, 298, 324, 823, 1284, 1831, 2420
BtgI	CCRYGG	1 cut(s)	175
BtgZI	GCGATG	1 cut(s)	3138
BtsCI	GGATG	6 cut(s)	244, 879, 1189, 1776, 2686, 2834
BtsIMutI	CAGTG	8 cut(s)	302, 717, 792, 1375, 1461, 1757, 2977, 2994
BveI	ACCTGC	1 cut(s)	2327
CaiI	CAGNNNCTG	2 cut(s)	1517, 2435
CciI	TCATGA	4 cut(s)	1168, 1792, 3060, 3216
CciNI	GCGGCCGC	1 cut(s)	296
CfoI	GCGC	3 cut(s)	856, 1570, 1922
Cfr10I	RCCGGY	2 cut(s)	152, 1157
Cfr13I	GGNCC	6 cut(s)	198, 322, 758, 2418, 2419, 2675
CseI	GACGC	1 cut(s)	2138
Csp6I	GTAC	4 cut(s)	335, 1120, 3092, 3136
CspAI	ACCGGT	1 cut(s)	1157
CviQI	GTAC	4 cut(s)	335, 1120, 3092, 3136
DdeI	CTNAG	5 cut(s)	190, 858, 1679, 2571, 2918
DraI	TTTAAA	3 cut(s)	454, 1246, 2112
DraIII	CACNNNGTG	3 cut(s)	71, 1682, 2668
DriI	GACNNNNNGTC	1 cut(s)	2171
EaeI	YGGCCR	1 cut(s)	296
EagI	CGGCCG	1 cut(s)	296
Eam1104I	CTCTTC	2 cut(s)	95, 2535
Eam1105I	GACNNNNNGTC	1 cut(s)	2171
EarI	CTCTTC	2 cut(s)	95, 2535
EclXI	CGGCCG	1 cut(s)	296
Eco130I	CCWWGG	1 cut(s)	2691
Eco24I	GRGCYC	2 cut(s)	1029, 2422
Eco31I	GGTCTC	1 cut(s)	2840
Eco47I	GGWCC	2 cut(s)	758, 2675
Eco52I	CGGCCG	1 cut(s)	296
Eco57I	CTGAAG	1 cut(s)	783
Eco88I	CYCGRG	2 cut(s)	88, 233
EcoNI	CCTNNNNNAGG	1 cut(s)	2097
EcoO109I	RGGNCCY	3 cut(s)	2418, 2419, 2675
EcoRI	GAATTC	1 cut(s)	1034
EcoRII	CCWGG	3 cut(s)	799, 996, 2500
EcoT14I	CCWWGG	1 cut(s)	2691
EcoT22I	ATGCAT	1 cut(s)	2285
EcoT38I	GRGCYC	2 cut(s)	1029, 2422
ErhI	CCWWGG	1 cut(s)	2691
Esp3I	CGTCTC	1 cut(s)	2893
FalI	AAGNNNNNCTT	2 cut(s)	1637, 1669
FaqI	GGGAC	5 cut(s)	721, 1539, 1961, 2688, 3164
FauI	CCCGC	1 cut(s)	312
FbaI	TGATCA	1 cut(s)	3021
FblI	GTMKAC	1 cut(s)	2613
FokI	GGATG	6 cut(s)	251, 866, 1196, 1783, 2673, 2841
FriOI	GRGCYC	2 cut(s)	1029, 2422
FspBI	CTAG	5 cut(s)	447, 863, 1308, 1728, 2459
GlaI	GCGC	3 cut(s)	855, 1569, 1921
GsuI	CTGGAG	1 cut(s)	1417
HaeII	RGCGCY	2 cut(s)	857, 1571
HaeIII	GGCC	7 cut(s)	200, 298, 324, 823, 1284, 1831, 2420
HapII	CCGG	6 cut(s)	68, 153, 1158, 1278, 2608, 3085
HgaI	GACGC	1 cut(s)	2138
HhaI	GCGC	3 cut(s)	856, 1570, 1922
Hin1I	GRCGYC	1 cut(s)	314
Hin6I	GCGC	3 cut(s)	854, 1568, 1920
HinP1I	GCGC	3 cut(s)	854, 1568, 1920
HincII	GTYRAC	2 cut(s)	169, 932
HindII	GTYRAC	2 cut(s)	169, 932
HindIII	AAGCTT	1 cut(s)	2534
HpaII	CCGG	6 cut(s)	68, 153, 1158, 1278, 2608, 3085
HphI	GGTGA	9 cut(s)	57, 83, 319, 609, 791, 1750, 2900, 2908, 3083
Hpy166II	GTNNAC	6 cut(s)	169, 932, 988, 1905, 2614, 2891
Hpy8I	GTNNAC	6 cut(s)	169, 932, 988, 1905, 2614, 2891
Hpy99I	CGWCG	2 cut(s)	83, 319
HpyCH4IV	ACGT	6 cut(s)	314, 614, 955, 2845, 2902, 3134
HpyF3I	CTNAG	5 cut(s)	190, 858, 1679, 2571, 2918
HpySE526I	ACGT	6 cut(s)	314, 614, 955, 2845, 2902, 3134
Hsp92I	GRCGYC	1 cut(s)	314
HspAI	GCGC	3 cut(s)	854, 1568, 1920
Kpn2I	TCCGGA	1 cut(s)	1277
Ksp22I	TGATCA	1 cut(s)	3021
LmnI	GCTCC	6 cut(s)	233, 1000, 1690, 2009, 2200, 3202
Lsp1109I	GCAGC	6 cut(s)	706, 902, 1015, 1124, 1761, 2584
LweI	GCATC	6 cut(s)	877, 888, 1761, 1907, 2594, 2980
MaeI	CTAG	5 cut(s)	447, 863, 1308, 1728, 2459
MaeII	ACGT	6 cut(s)	314, 614, 955, 2845, 2902, 3134
MaeIII	GTNAC	5 cut(s)	63, 615, 1421, 1582, 3112
MfeI	CAATTG	1 cut(s)	1047
MflI	RGATCY	5 cut(s)	1267, 2214, 2734, 2813, 2914
MhlI	GDGCHC	2 cut(s)	1029, 2422
MluI	ACGCGT	1 cut(s)	2130
MlyI	GAGTC	8 cut(s)	46, 71, 251, 272, 350, 937, 2446, 2576
MmeI	TCCRAC	1 cut(s)	2765
Mph1103I	ATGCAT	1 cut(s)	2285
MroI	TCCGGA	1 cut(s)	1277
MroXI	GAANNNNTTC	5 cut(s)	607, 1890, 2700, 2717, 2871
MslI	CAYNNNNRTG	5 cut(s)	1332, 1797, 2390, 2796, 3065
MspA1I	CMGCKG	1 cut(s)	203
MspI	CCGG	6 cut(s)	68, 153, 1158, 1278, 2608, 3085
MspR9I	CCNGG	5 cut(s)	69, 801, 998, 2502, 2609
MunI	CAATTG	1 cut(s)	1047
Mva1269I	GAATGC	1 cut(s)	2006
MvaI	CCWGG	3 cut(s)	801, 998, 2502
MvnI	CGCG	4 cut(s)	295, 319, 2132, 3053
NciI	CCSGG	2 cut(s)	69, 2609
NmeAIII	GCCGAG	5 cut(s)	36, 60, 117, 165, 350
NmuCI	GTSAC	3 cut(s)	63, 615, 1421
NotI	GCGGCCGC	1 cut(s)	296
NsiI	ATGCAT	1 cut(s)	2285
NspI	RCATGY	6 cut(s)	1415, 2055, 2154, 2287, 3040, 3120
NspV	TTCGAA	1 cut(s)	2704
OliI	CACNNNNGTG	1 cut(s)	2796
PaeI	GCATGC	3 cut(s)	1415, 2287, 3040
PagI	TCATGA	4 cut(s)	1168, 1792, 3060, 3216
PciI	ACATGT	1 cut(s)	2150
PcsI	WCGNNNNNNNCGW	3 cut(s)	3038, 3156, 3165
PctI	GAATGC	1 cut(s)	2006
PdmI	GAANNNNTTC	5 cut(s)	607, 1890, 2700, 2717, 2871
PfeI	GAWTC	4 cut(s)	16, 1127, 1357, 1514
Pfl23II	CGTACG	1 cut(s)	3135
PfoI	TCCNGGA	1 cut(s)	996
PinAI	ACCGGT	1 cut(s)	1157
Ple19I	CGATCG	1 cut(s)	2797
PleI	GAGTC	8 cut(s)	45, 70, 250, 271, 350, 936, 2446, 2575
PpsI	GAGTC	8 cut(s)	45, 70, 250, 271, 350, 936, 2446, 2575
Ppu21I	YACGTR	1 cut(s)	2846
PpuMI	RGGWCCY	1 cut(s)	2675
PscI	ACATGT	1 cut(s)	2150
PshAI	GACNNNNGTC	1 cut(s)	1730
Psp5II	RGGWCCY	1 cut(s)	2675
Psp6I	CCWGG	3 cut(s)	799, 996, 2500
PspGI	CCWGG	3 cut(s)	799, 996, 2500
PspLI	CGTACG	1 cut(s)	3135
PspOMI	GGGCCC	1 cut(s)	2418
PspPI	GGNCC	6 cut(s)	198, 322, 758, 2418, 2419, 2675
PspPPI	RGGWCCY	1 cut(s)	2675
PstI	CTGCAG	1 cut(s)	1779
PstNI	CAGNNNCTG	2 cut(s)	1517, 2435
PsuI	RGATCY	5 cut(s)	1267, 2214, 2734, 2813, 2914
PvuI	CGATCG	1 cut(s)	2797
RsaI	GTAC	4 cut(s)	336, 1121, 3093, 3137
RsaNI	GTAC	4 cut(s)	335, 1120, 3092, 3136
RseI	CAYNNNNRTG	5 cut(s)	1332, 1797, 2390, 2796, 3065
Sau96I	GGNCC	6 cut(s)	198, 322, 758, 2418, 2419, 2675
SchI	GAGTC	8 cut(s)	46, 71, 251, 272, 350, 937, 2446, 2576
ScrFI	CCNGG	5 cut(s)	69, 801, 998, 2502, 2609
SduI	GDGCHC	2 cut(s)	1029, 2422
SfaNI	GCATC	6 cut(s)	877, 888, 1761, 1907, 2594, 2980
SfcI	CTRYAG	2 cut(s)	1133, 1775
SfuI	TTCGAA	1 cut(s)	2704
SinI	GGWCC	2 cut(s)	758, 2675
SmiMI	CAYNNNNRTG	5 cut(s)	1332, 1797, 2390, 2796, 3065
SmlI	CTYRAG	1 cut(s)	2218
SmoI	CTYRAG	1 cut(s)	2218
SpeI	ACTAGT	1 cut(s)	1727
SphI	GCATGC	3 cut(s)	1415, 2287, 3040
SsiI	CCGC	8 cut(s)	150, 201, 270, 295, 299, 319, 1650, 3120
SspMI	CTAG	5 cut(s)	447, 863, 1308, 1728, 2459
StyD4I	CCNGG	5 cut(s)	67, 799, 996, 2500, 2607
StyI	CCWWGG	1 cut(s)	2691
TaiI	ACGT	6 cut(s)	317, 617, 958, 2848, 2905, 3137
TaqI	TCGA	7 cut(s)	245, 251, 594, 1384, 1712, 2704, 3150
TatI	WGTACW	1 cut(s)	3091
TauI	GCSGC	7 cut(s)	152, 203, 272, 298, 301, 1653, 3123
TfiI	GAWTC	4 cut(s)	16, 1127, 1357, 1514
TscAI	CASTG	8 cut(s)	309, 717, 792, 1375, 1468, 1764, 2977, 3001
TseFI	GTSAC	3 cut(s)	63, 615, 1421
TseI	GCWGC	6 cut(s)	719, 890, 1003, 1112, 1774, 2597
Tsp45I	GTSAC	3 cut(s)	63, 615, 1421
TspGWI	ACGGA	2 cut(s)	299, 2579
TspRI	CASTG	8 cut(s)	309, 717, 792, 1375, 1468, 1764, 2977, 3001
VpaK11BI	GGWCC	2 cut(s)	758, 2675
XagI	CCTNNNNNAGG	1 cut(s)	2097
XapI	RAATTY	6 cut(s)	464, 1034, 1450, 2233, 2268, 3212
XceI	RCATGY	6 cut(s)	1415, 2055, 2154, 2287, 3040, 3120
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1764
XmiI	GTMKAC	1 cut(s)	2613
XmnI	GAANNNNTTC	5 cut(s)	607, 1890, 2700, 2717, 2871
XspI	CTAG	5 cut(s)	447, 863, 1308, 1728, 2459
ZraI	GACGTC	1 cut(s)	315
Zsp2I	ATGCAT	1 cut(s)	2285

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.