Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0011056

Physical Location & Seq

Genomic Coordinates Forward (+)

66861305 .. 66867670

Gene Structure 6366 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG449100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2880 bp

ATGCCGAGTCTGAAACGGTGCAAATTCGGTGATTCGGAGGAGGACGAGAGCTCGGGGAGGAAGAAGAGGAGGACTAATGGGTACTACCCGCTCAATTTGCTCGGCGAGGTGGCGGCGGGGATTATTCCGGTGAGCTTCAGGGGCTTGCTTGGGTCGGTTGCTGCGGCAGAGAAGGGAGGAGGGTTTTCGTGGTGCACTGAAGTGTCGTGCTCGCCGCCTCCGGAGGAGGAGGCGGAGTCAAAATCAAAGGTATGCAAATCCGCAAAAGGAAAGGCTGAGGTTTCACGGCCGCCGCTGGTGAGGACGTCGAGGGGACGTGTTCAGGTACTGCCTTCTCGGTTTAATGATTCGGTTATTGAGAATTGGAAGAAAGAGAGTAAGACTAGTTTGCGTGGTGATAGTAATGTTGAAGATGAGAAGCCTAGCTTGAAACCCCAGAAAAATGGAAAGAAGCTAGGGAATAATGTGTATGGCTCGAAGAAGTATTCGGGTTTGTGTGAGGAAGAAGAGGAGGAGGAGGAAGAAGAGGAGGAAGATGAAGATGGGTATGTGCCGTTTAAGAGTTATAACATGAGGAAGTATAACTCCAGCTCACGTAGCACACTCACTTCAGTGCATGAGCATTTGGTTGAAGATGACAAGTGTGCGGTTGTGGAGATTATTGAAGAAGAAGAAGAAGAAGATGATTTAGAGGGTGCAGTGAGGATTTCAAATCAGAGGACAGATGGGTTGTATGGACCGGAGGACTTTTATTCCGGTGATATAGTGTGGGCAAAGCCAGGGAAAAAGGAGCCCTTTTGGCCTGCCATTGTTATTGATCCAATGACACAAGCGCCGGAGCTGGTTTTGAGGGCTTGCATACCTGATGCAGCTTGTGTCATGTTTTTCGGTTACTCTGGGAATGAGAACCAAAGGGATTATGCCTGGGTTAAAAGGGGATCACTTTTTCCATTTATGGATTATATAGACAGGTTTCAAGAGCAGTCTGAACTGGGCAACTGCAAGCCCTGTGATTTCCAGATGGCAACTGAGGAGGCATTTTTGGTGGATCAAGGGTTTACCGAGAAGTTGATAGCAGATATAAACATGGCAGCTGGGAACCCAGTGTATGATGAATCCGTACTTAGAGGAGTTCAAGAGGCTACTGGTTCAAATCATGATCTCGACTATCAGTTTGTGGACCAGGATATCTATCTGAAGAAGAAAGATGCAAGAGTCTGTGAAGGCTGCGGCTCGGATCTTAGAATGCCAAAGAAAATGAAGGTTTCAACTTCTGGAGGGCAATTCCTTTGTAAATCATGTGCTAAGTGTGGGTACTGTGGGACAGAAAAGCAAGCACTTAGTGAATGGGAACGACACACAGGTTCCAAGTCCAGAAATTGGAGGACTAGTGTCAGAGTTAAAGGCTCCTTACTGGCACTGGAACAATGGATGCTGCAGTTAGCAGAGTTTCATGAAAATGCTCTTGTGTCTGTTAAACCACCTAAACGACCTTCTATTAAAGAACGGAAGCAAAAATTGCTCACTTTTTTGCAAGAAAAGTATGAACCCGTTTATGCGAAGTGGACAACAGAGCGATGTGCTGTATGTAGATGGGTTGAAGACTGGGACTACAACAAAATCATCATATGCAACAGATGTCAAATAGCTGTTCATCAAGAATGCTATGGAGCAAGACATGTCCGGGATTTCACTTCATGGGTTTGCAAAGCATGTGAAACACCTGAAGTCAAGAGAGAATGTTGCCTCTGTCCTGTTAAAGGAGGTGCTTTAAAGCCAACTGATATTGAGACATTGTGGGTTCATATTACATGCGCTTGGTTCAGACCTGAAGTGTCGTTTGCAAGTGATGAGAAGATGGAGCCTGCTCTTGGTATCTTGAGTATTCCATCAAATTCTTTTGTCAAGATTTGTGTAATCTGTAAGCAAATTCATGGTTCATGCACACAATGTAGCAGGTGCTCCACTTATTACCATGCAATGTGTGCATCCAGGGCAGGGTACCGCATGGAGTTGCACTCTTTAGAGAAAAATGGGAAACAGATTACAAAAATGGTTTCCTATTGCGCTTATCACAGGGCTCCAAATCCAGATACGGTCTTAATTATACAGACTCCTCTAGGAGTGTTTTCAGCCAAAAGCCTTCTCCAAAGTAAGAAGAGGCCTGGTTCAAGGCTAATTTCATCTAATAGAATAAAGTTGGAAGAGGTTCCAACTGTTGAAACGACTGAACCTGAGCCATTATCTTCTGCAAGGTGCCGAATATTTAAAAGATTGAAAGATAGTAGGAAGAGAACAGAAGAAGAAGCTGTTGCCCACCAAGTGATGGGACATTCCCATCATCCCTTGGAAGCAATTCGAAGTTTGAACAAATTCAGAGTAGTAGAGGAACCTCTAACTTTTTCATCTTTTAGAGAACGGCTTTACCATTTACAGAGAACCGAAAAAGATCGTGTTTGCTTTGGCAGATCCGGGATACATGGATGGGGTCTCTTTGCACGTAGAAACATTCAAGAAGGAGAAATGGTCCTTGAATACCGTGGTGAACAGGTGAGGCGTAGTATTGCAGATTTGAGGGAGGCACGATATAGATCAGAAGGCAAAGACTGTTACCTTTTTAAGATTAGCGAAGAAGTGGTAGTAGATGCCACCGATAAAGGAAATATAGCACGGCTGATCAATCATTCGTGCATGCCCAATTGTTATGCGAGGATCATGAGTGTTGGTGATGAGGAAAGCCGGATTGTACTTATTGCAAAGACTAATGTATCTGCGGGTGACGAGCTAACGTATGATTACTTGTTTGATCCAAATGAGCCTGATGAATTCAAAGTTCCTTGTTTATGTAAAGCTCCCAACTGCCGGAAATTCATGAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005911 GO:0008150 GO:0009292 GO:0009294 GO:0009506 GO:0009893 GO:0009987 GO:0010604 GO:0010638 GO:0019222 GO:0030054 GO:0031056 GO:0031058 GO:0031060 GO:0031062 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0032268 GO:0032270 GO:0033043 GO:0033044 GO:0044764 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051569 GO:0051571 GO:0051704 GO:0055044 GO:0060255 GO:0065007 GO:0080090 GO:1902275 GO:1905269 GO:2001252

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PHD PHD_2 PWWP SET zf-HC5HC2H_2

Protein Analysis

959

Amino Acids

108.94

Weight (kDa)

6.71

Isoelectric Point (pI)

54.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PWWP	PF00855	253 - 346	1.3e-13	PWWP domain
PHD_2	PF13831	539 - 573	2.7e-11	PHD-finger
zf-HC5HC2H_2	PF13832	580 - 692	8.5e-28	PHD-zinc-finger like domain
zf-HC5HC2H	PF13771	602 - 693	2.6e-13	PHD-like zinc-binding domain
SET	PF00856	828 - 933	6.5e-25	SET domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011056)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27910 AT5G53430
fragaria_vesca	FvH4_7g31710 FvH4_7g31710
malus_domestica	MD01G1220300.v1.1 MD07G1289800.v1.1
prunus_persica	Prupe.2G311000_v2.0.a1
pyrus_communis	pycom01g22990 pycom07g26250
rosa_chinensis	RchiOBHm_Chr1g0380901
rosa_laevigata	RLG00000026264
rosa_multiflora	Rmu_sc0002962.1_g000020
rosa_roxburghii	Rroxscaffold_4G00278980
rosa_rugosa	Rorug01G0425200 Rorug01G0425300
rosa_samantha	Rh1AG449100 Rh1BG404800 Rh1CG418800 Rh1DG435200
rosa_wichuraiana	Rw1G039150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	567
AarI	CACCTGC	1 cut(s)	1947
AatII	GACGTC	1 cut(s)	308
Acc36I	ACCTGC	1 cut(s)	1947
Acc65I	GGTACC	1 cut(s)	2001
AccB1I	GGYRCC	2 cut(s)	2001, 2256
AccB7I	CCANNNNNTGG	2 cut(s)	1380, 2326
AccBSI	CCGCTC	1 cut(s)	91
AccIII	TCCGGA	1 cut(s)	220
AclWI	GGATC	7 cut(s)	812, 946, 1056, 1245, 2463, 2720, 2801
AcoI	YGGCCR	1 cut(s)	287
AcsI	RAATTY	6 cut(s)	23, 1894, 1929, 2372, 2825, 2867
AcuI	CTGAAG	6 cut(s)	121, 219, 594, 1217, 1746, 1851
AcyI	GRCGYC	1 cut(s)	305
AdeI	CACNNNGTG	2 cut(s)	1343, 2323
AfaI	GTAC	6 cut(s)	83, 327, 1122, 1316, 2003, 2748
AfiI	CCNNNNNNNGG	6 cut(s)	1380, 1760, 1871, 1998, 2326, 2862
AflIII	ACRYGT	2 cut(s)	316, 1678
AhlI	ACTAGT	2 cut(s)	383, 1388
AjiI	CACGTC	1 cut(s)	317
AjnI	CCWGG	5 cut(s)	778, 923, 1182, 1991, 2164
AleI	CACNNNNGTG	2 cut(s)	200, 611
Alw21I	GWGCWC	4 cut(s)	53, 197, 212, 1964
Alw26I	GTCTC	2 cut(s)	1784, 2495
Alw44I	GTGCAC	1 cut(s)	193
AlwI	GGATC	7 cut(s)	812, 946, 1056, 1245, 2463, 2720, 2801
AlwNI	CAGNNNCTG	1 cut(s)	328
Ama87I	CYCGRG	1 cut(s)	52
Aor13HI	TCCGGA	1 cut(s)	220
AoxI	GGCC	3 cut(s)	287, 800, 2162
ApaLI	GTGCAC	1 cut(s)	193
ApeKI	GCWGC	5 cut(s)	161, 869, 1091, 1227, 1435
ApoI	RAATTY	6 cut(s)	23, 1894, 1929, 2372, 2825, 2867
ArsI	GACNNNNNNTTYG	2 cut(s)	1157, 1189
Asp700I	GAANNNNTTC	3 cut(s)	2208, 2355, 2372
Asp718I	GGTACC	1 cut(s)	2001
AspLEI	GCGC	3 cut(s)	835, 1817, 2069
AspS9I	GGNCC	3 cut(s)	737, 1180, 2527
AsuC2I	CCSGG	2 cut(s)	1685, 2473
AsuHPI	GGTGA	9 cut(s)	41, 142, 310, 407, 770, 2555, 2563, 2738, 2789
AsuII	TTCGAA	1 cut(s)	2359
AvaI	CYCGRG	1 cut(s)	52
AvaII	GGWCC	3 cut(s)	737, 1180, 2527
BaeGI	GKGCMC	1 cut(s)	197
BaeI	ACNNNNGTAYC	2 cut(s)	2751, 2784
BanI	GGYRCC	2 cut(s)	2001, 2256
BanII	GRGCYC	3 cut(s)	53, 795, 2083
BbsI	GAAGAC	1 cut(s)	1608
Bbv12I	GWGCWC	4 cut(s)	53, 197, 212, 1964
BbvCI	CCTCAGC	1 cut(s)	276
BbvI	GCAGC	5 cut(s)	148, 881, 1103, 1214, 1422
BccI	CCATC	9 cut(s)	536, 719, 1015, 1587, 1852, 1897, 2320, 2346, 2478
BceAI	ACGGC	4 cut(s)	302, 538, 2435, 2687
BciT130I	CCWGG	5 cut(s)	780, 925, 1184, 1993, 2166
BciVI	GTATCC	1 cut(s)	2469
BclI	TGATCA	1 cut(s)	2676
BcnI	CCSGG	2 cut(s)	1685, 2473
BcoDI	GTCTC	2 cut(s)	1784, 2495
BcuI	ACTAGT	2 cut(s)	383, 1388
BfaI	CTAG	5 cut(s)	384, 423, 455, 1389, 2120
BfmI	CTRYAG	1 cut(s)	1436
BfoI	RGCGCY	1 cut(s)	836
BfuAI	ACCTGC	1 cut(s)	1947
BfuI	GTATCC	1 cut(s)	2469
BglI	GCCNNNNNGGC	1 cut(s)	799
Bme1390I	CCNGG	7 cut(s)	780, 925, 1184, 1685, 1993, 2166, 2473
Bme18I	GGWCC	3 cut(s)	737, 1180, 2527
BmeT110I	CYCGRG	1 cut(s)	52
BmgBI	CACGTC	1 cut(s)	317
BmgT120I	GGNCC	3 cut(s)	737, 1180, 2527
BmrFI	CCNGG	7 cut(s)	780, 925, 1184, 1685, 1993, 2166, 2473
BmrI	ACTGGG	3 cut(s)	1001, 1097, 1615
BmsI	GCATC	5 cut(s)	856, 1198, 1422, 1997, 2635
BmuI	ACTGGG	3 cut(s)	1001, 1097, 1615
BoxI	GACNNNNGTC	1 cut(s)	1391
BpiI	GAAGAC	1 cut(s)	1608
BplI	GAGNNNNNCTC	2 cut(s)	2003, 2035
BpmI	CTGGAG	2 cut(s)	571, 1296
Bpu10I	CCTNAGC	2 cut(s)	276, 2235
Bpu14I	TTCGAA	1 cut(s)	2359
BpuEI	CTTGAG	1 cut(s)	1900
BpuMI	CCSGG	2 cut(s)	1685, 2473
BsaAI	YACGTR	2 cut(s)	596, 2501
BsaBI	GATNNNNATC	2 cut(s)	1191, 2590
BsaHI	GRCGYC	1 cut(s)	305
BsaI	GGTCTC	1 cut(s)	2495
BsaJI	CCNNGG	5 cut(s)	779, 924, 1992, 2346, 2539
BsaWI	WCCGGW	4 cut(s)	127, 220, 739, 755
BsaXI	ACNNNNNCTCC	6 cut(s)	221, 251, 1375, 1405, 2511, 2541
Bsc4I	CCNNNNNNNGG	6 cut(s)	1380, 1760, 1871, 1998, 2326, 2862
Bse1I	ACTGG	6 cut(s)	996, 1103, 1150, 1419, 1425, 1610
Bse3DI	GCAATG	1 cut(s)	1986
Bse8I	GATNNNNATC	2 cut(s)	1191, 2590
BseAI	TCCGGA	1 cut(s)	220
BseBI	CCWGG	5 cut(s)	780, 925, 1184, 1993, 2166
BseDI	CCNNGG	5 cut(s)	779, 924, 1992, 2346, 2539
BseGI	GGATG	4 cut(s)	1437, 1988, 2341, 2489
BseJI	GATNNNNATC	2 cut(s)	1191, 2590
BseLI	CCNNNNNNNGG	6 cut(s)	1380, 1760, 1871, 1998, 2326, 2862
BseMI	GCAATG	1 cut(s)	1986
BseMII	CTCAG	3 cut(s)	267, 1020, 2226
BseNI	ACTGG	6 cut(s)	996, 1103, 1150, 1419, 1425, 1610
BseSI	GKGCMC	1 cut(s)	197
BseX3I	CGGCCG	1 cut(s)	287
BseXI	GCAGC	5 cut(s)	148, 881, 1103, 1214, 1422
BseYI	CCCAGC	1 cut(s)	1094
BsgI	GTGCAG	1 cut(s)	717
Bsh1285I	CGRYCG	1 cut(s)	290
BshFI	GGCC	3 cut(s)	289, 802, 2164
BshNI	GGYRCC	2 cut(s)	2001, 2256
BsiEI	CGRYCG	1 cut(s)	290
BsiHKAI	GWGCWC	4 cut(s)	53, 197, 212, 1964
BsiHKCI	CYCGRG	1 cut(s)	52
BsiSI	CCGG	9 cut(s)	128, 221, 740, 756, 836, 1684, 2472, 2740, 2863
BslFI	GGGAC	4 cut(s)	327, 1336, 1622, 2343
BslI	CCNNNNNNNGG	6 cut(s)	1380, 1760, 1871, 1998, 2326, 2862
BsmAI	GTCTC	2 cut(s)	1784, 2495
BsmFI	GGGAC	4 cut(s)	327, 1336, 1622, 2343
BsmI	GAATGC	2 cut(s)	1251, 1667
BsnI	GGCC	3 cut(s)	289, 802, 2164
Bso31I	GGTCTC	1 cut(s)	2495
BsoBI	CYCGRG	1 cut(s)	52
Bsp119I	TTCGAA	1 cut(s)	2359
Bsp1286I	GDGCHC	6 cut(s)	53, 197, 212, 795, 1964, 2083
Bsp13I	TCCGGA	1 cut(s)	220
BspANI	GGCC	3 cut(s)	289, 802, 2164
BspCNI	CTCAG	3 cut(s)	268, 1021, 2227
BspEI	TCCGGA	1 cut(s)	220
BspHI	TCATGA	4 cut(s)	1156, 1453, 2715, 2871
BspMAI	CTGCAG	1 cut(s)	1440
BspMI	ACCTGC	1 cut(s)	1947
BspPI	GGATC	7 cut(s)	812, 946, 1056, 1245, 2463, 2720, 2801
BspT104I	TTCGAA	1 cut(s)	2359
BspT107I	GGYRCC	2 cut(s)	2001, 2256
BspTNI	GGTCTC	1 cut(s)	2495
BsrBI	CCGCTC	1 cut(s)	91
BsrDI	GCAATG	1 cut(s)	1986
BsrI	ACTGG	6 cut(s)	996, 1103, 1150, 1419, 1425, 1610
BssECI	CCNNGG	5 cut(s)	779, 924, 1992, 2346, 2539
BssNI	GRCGYC	1 cut(s)	305
BssT1I	CCWWGG	1 cut(s)	2346
Bst2UI	CCWGG	5 cut(s)	780, 925, 1184, 1993, 2166
Bst4CI	ACNGT	6 cut(s)	18, 1319, 2098, 2218, 2540, 2609
Bst6I	CTCTTC	6 cut(s)	59, 501, 519, 2153, 2199, 2285
BstACI	GRCGYC	1 cut(s)	305
BstAPI	GCANNNNNTGC	2 cut(s)	1519, 1985
BstBAI	YACGTR	2 cut(s)	596, 2501
BstBI	TTCGAA	1 cut(s)	2359
BstC8I	GCNNGC	8 cut(s)	146, 212, 804, 856, 1004, 1335, 1866, 2693
BstDEI	CTNAG	7 cut(s)	276, 1029, 1124, 1241, 1305, 1340, 2235
BstDSI	CCRYGG	1 cut(s)	2539
BstENI	CCTNNNNNAGG	1 cut(s)	1758
BstF5I	GGATG	4 cut(s)	1437, 1988, 2341, 2489
BstH2I	RGCGCY	1 cut(s)	836
BstHHI	GCGC	3 cut(s)	835, 1817, 2069
BstMAI	GTCTC	2 cut(s)	1784, 2495
BstMCI	CGRYCG	1 cut(s)	290
BstMWI	GCNNNNNNNGC	7 cut(s)	97, 141, 597, 799, 1519, 1985, 1994
BstNI	CCWGG	5 cut(s)	780, 925, 1184, 1993, 2166
BstNSI	RCATGY	4 cut(s)	1682, 1716, 1815, 2695
BstPAI	GACNNNNGTC	1 cut(s)	1391
BstSCI	CCNGG	7 cut(s)	778, 923, 1182, 1683, 1991, 2164, 2471
BstSFI	CTRYAG	1 cut(s)	1436
BstSLI	GKGCMC	1 cut(s)	197
BstV1I	GCAGC	5 cut(s)	148, 881, 1103, 1214, 1422
BstV2I	GAAGAC	1 cut(s)	1608
BstX2I	RGATCY	2 cut(s)	1237, 2468
BstXI	CCANNNNNNTGG	1 cut(s)	443
BstYI	RGATCY	2 cut(s)	1237, 2468
BstZI	CGGCCG	1 cut(s)	287
BsuI	GTATCC	1 cut(s)	2469
BsuRI	GGCC	3 cut(s)	289, 802, 2164
BtgI	CCRYGG	1 cut(s)	2539
BtgZI	GCGATG	1 cut(s)	1591
BtrI	CACGTC	1 cut(s)	317
BtsCI	GGATG	4 cut(s)	1437, 1988, 2341, 2489
BtsI	GCAGTG	1 cut(s)	705
BtsIMutI	CAGTG	5 cut(s)	195, 618, 705, 1110, 1418
BveI	ACCTGC	1 cut(s)	1947
Cac8I	GCNNGC	8 cut(s)	146, 212, 804, 856, 1004, 1335, 1866, 2693
CaiI	CAGNNNCTG	1 cut(s)	328
CciI	TCATGA	4 cut(s)	1156, 1453, 2715, 2871
CfoI	GCGC	3 cut(s)	835, 1817, 2069
Cfr13I	GGNCC	3 cut(s)	737, 1180, 2527
Csp6I	GTAC	6 cut(s)	82, 326, 1121, 1315, 2002, 2747
CviQI	GTAC	6 cut(s)	82, 326, 1121, 1315, 2002, 2747
DdeI	CTNAG	7 cut(s)	276, 1029, 1124, 1241, 1305, 1340, 2235
DraI	TTTAAA	2 cut(s)	1773, 2269
DraIII	CACNNNGTG	2 cut(s)	1343, 2323
EaeI	YGGCCR	1 cut(s)	287
EagI	CGGCCG	1 cut(s)	287
Eam1104I	CTCTTC	6 cut(s)	59, 501, 519, 2153, 2199, 2285
EarI	CTCTTC	6 cut(s)	59, 501, 519, 2153, 2199, 2285
EciI	GGCGGA	1 cut(s)	248
Ecl136II	GAGCTC	1 cut(s)	51
EclXI	CGGCCG	1 cut(s)	287
Eco130I	CCWWGG	1 cut(s)	2346
Eco147I	AGGCCT	1 cut(s)	2164
Eco24I	GRGCYC	3 cut(s)	53, 795, 2083
Eco31I	GGTCTC	1 cut(s)	2495
Eco32I	GATATC	1 cut(s)	1189
Eco47I	GGWCC	3 cut(s)	737, 1180, 2527
Eco52I	CGGCCG	1 cut(s)	287
Eco53kI	GAGCTC	1 cut(s)	51
Eco57I	CTGAAG	6 cut(s)	121, 219, 594, 1217, 1746, 1851
Eco88I	CYCGRG	1 cut(s)	52
EcoICRI	GAGCTC	1 cut(s)	51
EcoNI	CCTNNNNNAGG	1 cut(s)	1758
EcoRI	GAATTC	1 cut(s)	2825
EcoRII	CCWGG	5 cut(s)	778, 923, 1182, 1991, 2164
EcoRV	GATATC	1 cut(s)	1189
EcoT14I	CCWWGG	1 cut(s)	2346
EcoT38I	GRGCYC	3 cut(s)	53, 795, 2083
ErhI	CCWWGG	1 cut(s)	2346
FalI	AAGNNNNNCTT	4 cut(s)	410, 442, 779, 811
FaqI	GGGAC	4 cut(s)	327, 1336, 1622, 2343
FauI	CCCGC	3 cut(s)	96, 109, 2767
FauNDI	CATATG	1 cut(s)	1628
FbaI	TGATCA	1 cut(s)	2676
FokI	GGATG	4 cut(s)	1444, 1975, 2328, 2496
FriOI	GRGCYC	3 cut(s)	53, 795, 2083
FspBI	CTAG	5 cut(s)	384, 423, 455, 1389, 2120
GlaI	GCGC	3 cut(s)	834, 1816, 2068
GsaI	CCCAGC	1 cut(s)	1098
GsuI	CTGGAG	2 cut(s)	571, 1296
HaeII	RGCGCY	1 cut(s)	836
HaeIII	GGCC	3 cut(s)	289, 802, 2164
HapII	CCGG	9 cut(s)	128, 221, 740, 756, 836, 1684, 2472, 2740, 2863
HhaI	GCGC	3 cut(s)	835, 1817, 2069
Hin1I	GRCGYC	1 cut(s)	305
Hin6I	GCGC	3 cut(s)	833, 1815, 2067
HinP1I	GCGC	3 cut(s)	833, 1815, 2067
HinfI	GANTC	7 cut(s)	7, 32, 236, 347, 1115, 1215, 2113
HpaII	CCGG	9 cut(s)	128, 221, 740, 756, 836, 1684, 2472, 2740, 2863
HphI	GGTGA	9 cut(s)	41, 142, 310, 407, 770, 2555, 2563, 2738, 2789
Hpy166II	GTNNAC	5 cut(s)	195, 1059, 1180, 1566, 2546
Hpy8I	GTNNAC	5 cut(s)	195, 1059, 1180, 1566, 2546
Hpy99I	CGWCG	1 cut(s)	310
HpyAV	CCTTC	8 cut(s)	166, 342, 1217, 1255, 1503, 2153, 2510, 2591
HpyCH4III	ACNGT	6 cut(s)	18, 1319, 2098, 2218, 2540, 2609
HpyCH4IV	ACGT	5 cut(s)	305, 316, 595, 2500, 2789
HpyF10VI	GCNNNNNNNGC	7 cut(s)	97, 141, 597, 799, 1519, 1985, 1994
HpyF3I	CTNAG	7 cut(s)	276, 1029, 1124, 1241, 1305, 1340, 2235
HpySE526I	ACGT	5 cut(s)	305, 316, 595, 2500, 2789
Hsp92I	GRCGYC	1 cut(s)	305
HspAI	GCGC	3 cut(s)	833, 1815, 2067
Kpn2I	TCCGGA	1 cut(s)	220
KpnI	GGTACC	1 cut(s)	2005
Ksp22I	TGATCA	1 cut(s)	2676
LmnI	GCTCC	8 cut(s)	790, 838, 1412, 1670, 1861, 1967, 2086, 2857
Lsp1109I	GCAGC	5 cut(s)	148, 881, 1103, 1214, 1422
LweI	GCATC	5 cut(s)	856, 1198, 1422, 1997, 2635
MaeI	CTAG	5 cut(s)	384, 423, 455, 1389, 2120
MaeII	ACGT	5 cut(s)	305, 316, 595, 2500, 2789
MaeIII	GTNAC	3 cut(s)	890, 2609, 2777
MbiI	CCGCTC	1 cut(s)	91
MfeI	CAATTG	1 cut(s)	2698
MflI	RGATCY	2 cut(s)	1237, 2468
MhlI	GDGCHC	6 cut(s)	53, 197, 212, 795, 1964, 2083
MlyI	GAGTC	4 cut(s)	16, 245, 1224, 2107
MmeI	TCCRAC	2 cut(s)	2181, 2237
MroI	TCCGGA	1 cut(s)	220
MroXI	GAANNNNTTC	3 cut(s)	2208, 2355, 2372
MslI	CAYNNNNRTG	3 cut(s)	200, 611, 1458
MspA1I	CMGCKG	2 cut(s)	295, 1094
MspI	CCGG	9 cut(s)	128, 221, 740, 756, 836, 1684, 2472, 2740, 2863
MspR9I	CCNGG	7 cut(s)	780, 925, 1184, 1685, 1993, 2166, 2473
MunI	CAATTG	1 cut(s)	2698
Mva1269I	GAATGC	2 cut(s)	1251, 1667
MvaI	CCWGG	5 cut(s)	780, 925, 1184, 1993, 2166
MwoI	GCNNNNNNNGC	7 cut(s)	97, 141, 597, 799, 1519, 1985, 1994
NciI	CCSGG	2 cut(s)	1685, 2473
NdeI	CATATG	1 cut(s)	1628
NmeAIII	GCCGAG	2 cut(s)	30, 81
NmuCI	GTSAC	1 cut(s)	2777
NspI	RCATGY	4 cut(s)	1682, 1716, 1815, 2695
NspV	TTCGAA	1 cut(s)	2359
OliI	CACNNNNGTG	2 cut(s)	200, 611
PaeI	GCATGC	1 cut(s)	2695
PagI	TCATGA	4 cut(s)	1156, 1453, 2715, 2871
PaqCI	CACCTGC	1 cut(s)	1947
PceI	AGGCCT	1 cut(s)	2164
PciI	ACATGT	1 cut(s)	1678
PctI	GAATGC	2 cut(s)	1251, 1667
PdmI	GAANNNNTTC	3 cut(s)	2208, 2355, 2372
PfeI	GAWTC	3 cut(s)	32, 347, 1115
PflMI	CCANNNNNTGG	2 cut(s)	1380, 2326
PfoI	TCCNGGA	2 cut(s)	1683, 2471
PleI	GAGTC	4 cut(s)	15, 244, 1223, 2107
PpsI	GAGTC	4 cut(s)	15, 244, 1223, 2107
Ppu21I	YACGTR	2 cut(s)	596, 2501
PscI	ACATGT	1 cut(s)	1678
PshAI	GACNNNNGTC	1 cut(s)	1391
PsiI	TTATAA	1 cut(s)	567
Psp124BI	GAGCTC	1 cut(s)	53
Psp6I	CCWGG	5 cut(s)	778, 923, 1182, 1991, 2164
PspFI	CCCAGC	1 cut(s)	1094
PspGI	CCWGG	5 cut(s)	778, 923, 1182, 1991, 2164
PspPI	GGNCC	3 cut(s)	737, 1180, 2527
PstI	CTGCAG	1 cut(s)	1440
PstNI	CAGNNNCTG	1 cut(s)	328
PsuI	RGATCY	2 cut(s)	1237, 2468
PvuII	CAGCTG	1 cut(s)	1094
RsaI	GTAC	6 cut(s)	83, 327, 1122, 1316, 2003, 2748
RsaNI	GTAC	6 cut(s)	82, 326, 1121, 1315, 2002, 2747
RseI	CAYNNNNRTG	3 cut(s)	200, 611, 1458
SacI	GAGCTC	1 cut(s)	53
Sau96I	GGNCC	3 cut(s)	737, 1180, 2527
SchI	GAGTC	4 cut(s)	16, 245, 1224, 2107
ScrFI	CCNGG	7 cut(s)	780, 925, 1184, 1685, 1993, 2166, 2473
SduI	GDGCHC	6 cut(s)	53, 197, 212, 795, 1964, 2083
SfaNI	GCATC	5 cut(s)	856, 1198, 1422, 1997, 2635
SfcI	CTRYAG	1 cut(s)	1436
SfuI	TTCGAA	1 cut(s)	2359
SinI	GGWCC	3 cut(s)	737, 1180, 2527
SmiMI	CAYNNNNRTG	3 cut(s)	200, 611, 1458
SmlI	CTYRAG	1 cut(s)	1879
SmoI	CTYRAG	1 cut(s)	1879
SpeI	ACTAGT	2 cut(s)	383, 1388
SphI	GCATGC	1 cut(s)	2695
SseBI	AGGCCT	1 cut(s)	2164
SspI	AATATT	1 cut(s)	2265
SspMI	CTAG	5 cut(s)	384, 423, 455, 1389, 2120
SstI	GAGCTC	1 cut(s)	53
StuI	AGGCCT	1 cut(s)	2164
StyD4I	CCNGG	7 cut(s)	778, 923, 1182, 1683, 1991, 2164, 2471
StyI	CCWWGG	1 cut(s)	2346
TaaI	ACNGT	6 cut(s)	18, 1319, 2098, 2218, 2540, 2609
TaiI	ACGT	5 cut(s)	308, 319, 598, 2503, 2792
TaqI	TCGA	4 cut(s)	308, 476, 1164, 2359
TatI	WGTACW	1 cut(s)	2746
TauI	GCSGC	6 cut(s)	116, 167, 217, 292, 295, 1233
TfiI	GAWTC	3 cut(s)	32, 347, 1115
TscAI	CASTG	5 cut(s)	202, 618, 705, 1110, 1425
TseFI	GTSAC	1 cut(s)	2777
TseI	GCWGC	5 cut(s)	161, 869, 1091, 1227, 1435
Tsp45I	GTSAC	1 cut(s)	2777
TspGWI	ACGGA	2 cut(s)	1108, 1522
TspRI	CASTG	5 cut(s)	202, 618, 705, 1110, 1425
Van91I	CCANNNNNTGG	2 cut(s)	1380, 2326
VneI	GTGCAC	1 cut(s)	193
VpaK11BI	GGWCC	3 cut(s)	737, 1180, 2527
XagI	CCTNNNNNAGG	1 cut(s)	1758
XapI	RAATTY	6 cut(s)	23, 1894, 1929, 2372, 2825, 2867
XceI	RCATGY	4 cut(s)	1682, 1716, 1815, 2695
XmnI	GAANNNNTTC	3 cut(s)	2208, 2355, 2372
XspI	CTAG	5 cut(s)	384, 423, 455, 1389, 2120
ZraI	GACGTC	1 cut(s)	306

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.