Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0011056

Physical Location & Seq

Genomic Coordinates Reverse (-)

1895777 .. 1902840

Gene Structure 7064 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00278980.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3246 bp

ATGATAATCAAGAAGAATTTGAAATCGCAAATGCCGAGTCTGAAACGGTGCAAATTCGGTGATTCGGAGGAGGACGAGAGCTCGGGGAGGAAGAAGAGGAGGACTAATGGGTACTACCCGCTCAATTTGCTCGGCGAGGTGGCGGCGGGGATTATTCCGGTGAGCTTCAGGGGCTTGCTTGGGTCGGTTGCTGCGGCGGAGAAGGGAGGAGGGTTTTCGTGGTGCACTGAAGTGTCGTGCTCGCCACCTCCGGAGGAGGAGGCGGAGTCGAAATCAAAGGTATGCAAATCCGCAAAAGGAAAGGCTGAGGTTTCGCGGCCGCCGCTGGTGAGGACGTCGAGGGGACGTGTTCAGGTACTGCCTTCTCGGTTTAATGACTCGGTTATTGAGAATTGGAAGAAAGAGAGTAAGACTAGTTTGCGTGGTGATAGTAATGTTGAAGATGAGAAGCCTAGCTTGAAACCCCAGAAAAATGGAAAGAAGCTAGGGAATAATGTGTATGGCTCGAAGAAGTATTCGGGTTTGTGTGAGGAAGAAGAGGAGGAGGAGGAAGAAGAGGAGGAAGATGAAGATGGGTATGTGCCGTTTAAGAGTTATAACATGAGGAAGTATAACTCCAGCTCACGTAGCACACTCACTTCAGTGCATGAGCATTTGGTTGAAGATGACAAGTGTGCGGTTGTGGAGATTATTGAAGAAGAAGAAGAAGATGATTTAGAGGGTGCAGTGAGGATTTCAAATCAGAGGACAGATGGGTTGTATGGACCGGAGGACTTTTATTCCGGTGATATAGTGTGGGCAAAGCCAGGGAAAAAGGAGCCCTTTTGGCCTGCCATTGTTATTGATCCAATGACACAAGCGCCGGAGCTGGTTTTGAGGGCTTGCATACCTGATGCAGCTTGTGTCATGTTTTTCGGTTACTCTGGGAATGAGAACCAAAGGGATTATGCCTGGGTTAAAAGGGGATCACTTTTTCCATTTATGGATTATATAGACAGGTTTCAAGAGCAGACTGAACTGGGCAACTGCAAGCCCTGTGATTTCCAGATGGCAACTGAGGAGGCATTTTTGGTGGATCAAGGGTTTACCGAGAAGTTGATAGCAGATATAAACATGGCAGCTGGGAACCCAGTGTATGATGAATCCGTACTTAGAGGAGTTCAAGAGGCTACTGGTTCAAATCATGATCTCGACTATCAGTTTGTGGACCAGCTGGACATCTATCGGAAGAAGAAAGATGCAAGAGTCTGTGAAGGCTGTGGCTCGGATCTTAGAATGCCAAAGAAAATGAAGGTTTCAACTTCTGGAGGGCAATTCCTTTGTAAATCATGTGCTAAGTTAACAAAACATGTTTGTGGCATATGCAAGAAGTGGAATCAGCCTGACAGTGGAAGTTGGGTCCGGTGTGATGGTTGCAGAGTATGGGTGCATGCAGAATGTGATAGAATTAACACCAATTATTATAAGGAATTTGGGGGCACTGATTATTTCTGCCCTCCTTGCAAAGTAAAGTTTAACTTTGAATTGTCAGATTCTGAAAAGGAGCAACCAAAAGTCAAGTGTAGATCTACTAAAAATGAGGCACAACTGGTGCTGCCTAACAAGGTTACTGTTCTCTGTAACGGTGTGGAAGGCATATATTTTCCAAGTCTTCACTCTGTTGTGTGCAAGTGTGGGTACTGTGGGACAGAAAAGCAAGCGCTTAGTGAATGGGAGCGACACACAGGTTCCAAGTCCAGAAATTGGAGGACTAGTGTCAGAGTTAAAGGCTCCTTACTGGCACTGGAACAATGGATGCTGCAGTTAGCAGAGTTTCATGAAAATGCTCTTGTGTCTGTTAAACCACCTAAACGACCTTCTATTAAAGAACGGAAGCAAAAATTGCTCACTTTTTTGCAAGAAAAGTATGAACCCGTTTATGCGAAGTGGACAACAGAGCGATGTGCTGTATGTAGATGGGTTGAAGACTGGGACTACAACAAAATCATCATATGCAACAGATGTCAAATAGCTGTTCATCAAGAATGCTATGGAGCAAGACATGTCCGGGATTTCACTTCATGGGTTTGCAAAGCTTGTGAAACTCCTGAAGTCAAGAGAGAATGTTGCCTCTGTCCTGTTAAAGGAGGTGCTTTAAAGCCAACTGATATTGAGACATTGTGGGTTCATATTACATGCGCTTGGTTCAGACCTGAAGTGTCGTTTGCAAGTGATGAGAAGATGGAGCCTGCTCTTGGTATCTTGAGTATTCCATCAAATTCTTTTGTCAAGATTTGTGTAATCTGTAAGCAAATTCATGGTTCATGCACACAATGTAGCAGGTGCTCCACTTATTACCATGCAATGTGTGCATCCAGGGCAGGGTACCGCATGGAGTTGCACTCTTTAGAGAAAAATGGGAAACAGATTACAAAAATGGTTTCCTATTGTGCTTATCACAGGGCTCCAAATCCAGATACGGTCTTAATTATACAGACTCCTCTAGGAGTGTTTTCAGCCAAAAGCCTTCTCCAAAGTAAGAAGAGGCCTGGTTCAAGGCTAATTTCATCTAATAGAATAAAGTTGGAAGAGGTTCCAACTGTTGAAACGACTGAACCTGAGCCAGTATCTTCTGCAAGGTGCCGAATATTTAAAAGATTGAAAGATAGTAGGAAGAGAACAGAAGAAGAAGCTGTTGCCCACCAAGTGATGGGACATTCCCATCATCCCTTGGAAGCAATTCGAAGTTTGAACAAATTCAGAGTAGTAGAGGAACCTCTAACTTTTTCATCTTTTAGAGAACGGCTTTACCATTTACAGGCTAAGAACCGAAAAGATCGTGTTTGCTTTGGCAGATCCGGGATACATGGATGGGGTCTCTTTGCACGTAGAAACATTCAAGAAGGAGAAATGGTCCTTGAATACCGTGGTGAACAGGTGAGGCGTAGTATTGCAGATTTGAGGGAGGCACGATATAGATCAGAAGGCAAAGACTGTTACCTTTTTAAGATTAGCGAAGAAGTGGTAGTAGATGCCACCGATAAAGGAAATATAGCACGGCTGATCAATCATTCGTGCATGCCCAATTGTTATGCGAGGATCATGAGTGTTGGTGATGAGGAAAGCCGGATTGTACTTATTGCAAAGACTAATGTATCTGCGGGTGATGAGCTAACGTATGATTACTTGTTTGATCCAAATGAGCCTGATGAATTCAAAGTTCCTTGTCTATGTAAAGCTCCGAACTGCCGGAAATTCATGAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005911 GO:0008150 GO:0009292 GO:0009294 GO:0009506 GO:0009893 GO:0009987 GO:0010604 GO:0010638 GO:0019222 GO:0030054 GO:0031056 GO:0031058 GO:0031060 GO:0031062 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0032268 GO:0032270 GO:0033043 GO:0033044 GO:0044764 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051569 GO:0051571 GO:0051704 GO:0055044 GO:0060255 GO:0065007 GO:0080090 GO:1902275 GO:1905269 GO:2001252

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PHD PHD_2 PWWP SET zf-HC5HC2H_2

Protein Analysis

1081

Amino Acids

122.9

Weight (kDa)

8.09

Isoelectric Point (pI)

50.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PWWP	PF00855	262 - 355	1.4e-13	PWWP domain
PHD	PF00628	452 - 501	7.1e-07	PHD-finger
PHD_2	PF13831	660 - 694	3.1e-11	PHD-finger
zf-HC5HC2H_2	PF13832	701 - 813	1e-27	PHD-zinc-finger like domain
zf-HC5HC2H	PF13771	723 - 814	3.1e-13	PHD-like zinc-binding domain
SET	PF00856	950 - 1055	7.6e-25	SET domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011056)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27910 AT5G53430
fragaria_vesca	FvH4_7g31710 FvH4_7g31710
malus_domestica	MD01G1220300.v1.1 MD07G1289800.v1.1
prunus_persica	Prupe.2G311000_v2.0.a1
pyrus_communis	pycom01g22990 pycom07g26250
rosa_chinensis	RchiOBHm_Chr1g0380901
rosa_laevigata	RLG00000026264
rosa_multiflora	Rmu_sc0002962.1_g000020
rosa_roxburghii	Rroxscaffold_4G00278980
rosa_rugosa	Rorug01G0425200 Rorug01G0425300
rosa_samantha	Rh1AG449100 Rh1BG404800 Rh1CG418800 Rh1DG435200
rosa_wichuraiana	Rw1G039150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	597, 1464
AarI	CACCTGC	1 cut(s)	2310
AatII	GACGTC	1 cut(s)	338
Acc36I	ACCTGC	1 cut(s)	2310
Acc65I	GGTACC	1 cut(s)	2364
AccB1I	GGYRCC	2 cut(s)	2364, 2619
AccB7I	CCANNNNNTGG	2 cut(s)	1743, 2689
AccBSI	CCGCTC	1 cut(s)	121
AccII	CGCG	1 cut(s)	316
AccIII	TCCGGA	1 cut(s)	250
AclWI	GGATC	7 cut(s)	839, 973, 1083, 1275, 2829, 3086, 3167
AcoI	YGGCCR	1 cut(s)	317
AcsI	RAATTY	8 cut(s)	16, 53, 1469, 2257, 2292, 2735, 3191, 3233
AcuI	CTGAAG	5 cut(s)	151, 249, 624, 2109, 2214
AcyI	GRCGYC	1 cut(s)	335
AdeI	CACNNNGTG	1 cut(s)	2686
AfaI	GTAC	6 cut(s)	113, 357, 1149, 1679, 2366, 3114
AfeI	AGCGCT	1 cut(s)	1701
AfiI	CCNNNNNNNGG	7 cut(s)	1388, 1743, 2123, 2234, 2361, 2689, 2797
AflIII	ACRYGT	3 cut(s)	346, 1348, 2041
AhlI	ACTAGT	2 cut(s)	413, 1751
AjiI	CACGTC	1 cut(s)	347
AjnI	CCWGG	4 cut(s)	805, 950, 2354, 2527
AleI	CACNNNNGTG	2 cut(s)	230, 641
Alw21I	GWGCWC	4 cut(s)	83, 227, 242, 2327
Alw26I	GTCTC	2 cut(s)	2147, 2861
Alw44I	GTGCAC	1 cut(s)	223
AlwI	GGATC	7 cut(s)	839, 973, 1083, 1275, 2829, 3086, 3167
AlwNI	CAGNNNCTG	2 cut(s)	358, 1535
Ama87I	CYCGRG	1 cut(s)	82
Aor13HI	TCCGGA	1 cut(s)	250
Aor51HI	AGCGCT	1 cut(s)	1701
AoxI	GGCC	3 cut(s)	317, 827, 2525
ApaLI	GTGCAC	1 cut(s)	223
ApeKI	GCWGC	5 cut(s)	191, 896, 1118, 1594, 1798
ApoI	RAATTY	8 cut(s)	16, 53, 1469, 2257, 2292, 2735, 3191, 3233
ArsI	GACNNNNNNTTYG	4 cut(s)	22, 54, 1184, 1216
Asp700I	GAANNNNTTC	3 cut(s)	2571, 2718, 2735
Asp718I	GGTACC	1 cut(s)	2364
AspLEI	GCGC	3 cut(s)	862, 1702, 2180
AspS9I	GGNCC	4 cut(s)	764, 1207, 1399, 2893
AsuC2I	CCSGG	2 cut(s)	2048, 2839
AsuHPI	GGTGA	9 cut(s)	71, 172, 340, 437, 797, 2921, 2929, 3104, 3155
AsuII	TTCGAA	1 cut(s)	2722
AvaI	CYCGRG	1 cut(s)	82
AvaII	GGWCC	4 cut(s)	764, 1207, 1399, 2893
BaeGI	GKGCMC	2 cut(s)	227, 1481
BaeI	ACNNNNGTAYC	2 cut(s)	3117, 3150
BanI	GGYRCC	2 cut(s)	2364, 2619
BanII	GRGCYC	3 cut(s)	83, 822, 2446
BbsI	GAAGAC	2 cut(s)	1643, 1971
Bbv12I	GWGCWC	4 cut(s)	83, 227, 242, 2327
BbvCI	CCTCAGC	1 cut(s)	306
BbvI	GCAGC	5 cut(s)	178, 908, 1130, 1581, 1785
BceAI	ACGGC	3 cut(s)	568, 2798, 3053
BciT130I	CCWGG	4 cut(s)	807, 952, 2356, 2529
BciVI	GTATCC	1 cut(s)	2835
BclI	TGATCA	1 cut(s)	3042
BcnI	CCSGG	2 cut(s)	2048, 2839
BcoDI	GTCTC	2 cut(s)	2147, 2861
BcuI	ACTAGT	2 cut(s)	413, 1751
BfaI	CTAG	5 cut(s)	414, 453, 485, 1752, 2483
BfmI	CTRYAG	1 cut(s)	1799
BfoI	RGCGCY	2 cut(s)	863, 1703
BfuAI	ACCTGC	1 cut(s)	2310
BfuI	GTATCC	1 cut(s)	2835
BglI	GCCNNNNNGGC	1 cut(s)	826
BglII	AGATCT	1 cut(s)	1565
Bme1390I	CCNGG	6 cut(s)	807, 952, 2048, 2356, 2529, 2839
Bme18I	GGWCC	4 cut(s)	764, 1207, 1399, 2893
BmeT110I	CYCGRG	1 cut(s)	82
BmgBI	CACGTC	1 cut(s)	347
BmgT120I	GGNCC	4 cut(s)	764, 1207, 1399, 2893
BmrFI	CCNGG	6 cut(s)	807, 952, 2048, 2356, 2529, 2839
BmrI	ACTGGG	3 cut(s)	1028, 1124, 1978
BmsI	GCATC	5 cut(s)	883, 1228, 1785, 2360, 3001
BmuI	ACTGGG	3 cut(s)	1028, 1124, 1978
BoxI	GACNNNNGTC	1 cut(s)	1754
BpiI	GAAGAC	2 cut(s)	1643, 1971
BplI	GAGNNNNNCTC	2 cut(s)	2366, 2398
BpmI	CTGGAG	2 cut(s)	601, 1326
Bpu10I	CCTNAGC	2 cut(s)	306, 2598
Bpu14I	TTCGAA	1 cut(s)	2722
BpuEI	CTTGAG	1 cut(s)	2263
BpuMI	CCSGG	2 cut(s)	2048, 2839
BsaAI	YACGTR	2 cut(s)	626, 2867
BsaBI	GATNNNNATC	1 cut(s)	2956
BsaHI	GRCGYC	1 cut(s)	335
BsaI	GGTCTC	1 cut(s)	2861
BsaJI	CCNNGG	5 cut(s)	806, 951, 2355, 2709, 2905
BsaWI	WCCGGW	5 cut(s)	157, 250, 766, 782, 1401
BsaXI	ACNNNNNCTCC	6 cut(s)	251, 281, 1738, 1768, 2877, 2907
Bsc4I	CCNNNNNNNGG	7 cut(s)	1388, 1743, 2123, 2234, 2361, 2689, 2797
Bse1I	ACTGG	8 cut(s)	1023, 1130, 1177, 1593, 1782, 1788, 1973, 2603
Bse3DI	GCAATG	1 cut(s)	2349
Bse8I	GATNNNNATC	1 cut(s)	2956
BseAI	TCCGGA	1 cut(s)	250
BseBI	CCWGG	4 cut(s)	807, 952, 2356, 2529
BseDI	CCNNGG	5 cut(s)	806, 951, 2355, 2709, 2905
BseGI	GGATG	4 cut(s)	1800, 2351, 2704, 2855
BseJI	GATNNNNATC	1 cut(s)	2956
BseLI	CCNNNNNNNGG	7 cut(s)	1388, 1743, 2123, 2234, 2361, 2689, 2797
BseMI	GCAATG	1 cut(s)	2349
BseMII	CTCAG	3 cut(s)	297, 1047, 2589
BseNI	ACTGG	8 cut(s)	1023, 1130, 1177, 1593, 1782, 1788, 1973, 2603
BseSI	GKGCMC	2 cut(s)	227, 1481
BseX3I	CGGCCG	1 cut(s)	317
BseXI	GCAGC	5 cut(s)	178, 908, 1130, 1581, 1785
BseYI	CCCAGC	1 cut(s)	1121
BsgI	GTGCAG	1 cut(s)	744
Bsh1236I	CGCG	1 cut(s)	316
Bsh1285I	CGRYCG	1 cut(s)	320
BshFI	GGCC	3 cut(s)	319, 829, 2527
BshNI	GGYRCC	2 cut(s)	2364, 2619
BsiEI	CGRYCG	1 cut(s)	320
BsiHKAI	GWGCWC	4 cut(s)	83, 227, 242, 2327
BsiHKCI	CYCGRG	1 cut(s)	82
BslFI	GGGAC	4 cut(s)	357, 1699, 1985, 2706
BslI	CCNNNNNNNGG	7 cut(s)	1388, 1743, 2123, 2234, 2361, 2689, 2797
BsmAI	GTCTC	2 cut(s)	2147, 2861
BsmFI	GGGAC	4 cut(s)	357, 1699, 1985, 2706
BsmI	GAATGC	2 cut(s)	1281, 2030
BsnI	GGCC	3 cut(s)	319, 829, 2527
Bso31I	GGTCTC	1 cut(s)	2861
BsoBI	CYCGRG	1 cut(s)	82
Bsp119I	TTCGAA	1 cut(s)	2722
Bsp1286I	GDGCHC	7 cut(s)	83, 227, 242, 822, 1481, 2327, 2446
Bsp13I	TCCGGA	1 cut(s)	250
BspANI	GGCC	3 cut(s)	319, 829, 2527
BspCNI	CTCAG	3 cut(s)	298, 1048, 2590
BspEI	TCCGGA	1 cut(s)	250
BspFNI	CGCG	1 cut(s)	316
BspHI	TCATGA	4 cut(s)	1183, 1816, 3081, 3237
BspMAI	CTGCAG	1 cut(s)	1803
BspMI	ACCTGC	1 cut(s)	2310
BspPI	GGATC	7 cut(s)	839, 973, 1083, 1275, 2829, 3086, 3167
BspT104I	TTCGAA	1 cut(s)	2722
BspT107I	GGYRCC	2 cut(s)	2364, 2619
BspTNI	GGTCTC	1 cut(s)	2861
BsrBI	CCGCTC	1 cut(s)	121
BsrDI	GCAATG	1 cut(s)	2349
BsrI	ACTGG	8 cut(s)	1023, 1130, 1177, 1593, 1782, 1788, 1973, 2603
BssECI	CCNNGG	5 cut(s)	806, 951, 2355, 2709, 2905
BssNI	GRCGYC	1 cut(s)	335
BssT1I	CCWWGG	1 cut(s)	2709
Bst2UI	CCWGG	4 cut(s)	807, 952, 2356, 2529
Bst4CI	ACNGT	9 cut(s)	48, 1388, 1612, 1625, 1682, 2461, 2581, 2906, 2975
Bst6I	CTCTTC	6 cut(s)	89, 531, 549, 2516, 2562, 2648
BstACI	GRCGYC	1 cut(s)	335
BstAPI	GCANNNNNTGC	2 cut(s)	1882, 2348
BstBAI	YACGTR	2 cut(s)	626, 2867
BstBI	TTCGAA	1 cut(s)	2722
BstC8I	GCNNGC	9 cut(s)	176, 242, 831, 883, 1031, 1431, 1698, 2229, 3059
BstDEI	CTNAG	8 cut(s)	306, 1056, 1151, 1271, 1335, 1703, 2598, 2802
BstDSI	CCRYGG	1 cut(s)	2905
BstENI	CCTNNNNNAGG	1 cut(s)	2121
BstF5I	GGATG	4 cut(s)	1800, 2351, 2704, 2855
BstFNI	CGCG	1 cut(s)	316
BstH2I	RGCGCY	2 cut(s)	863, 1703
BstHHI	GCGC	3 cut(s)	862, 1702, 2180
BstMAI	GTCTC	2 cut(s)	2147, 2861
BstMCI	CGRYCG	1 cut(s)	320
BstMWI	GCNNNNNNNGC	9 cut(s)	127, 171, 322, 627, 826, 1500, 1882, 2348, 2357
BstNI	CCWGG	4 cut(s)	807, 952, 2356, 2529
BstNSI	RCATGY	5 cut(s)	1352, 1433, 2045, 2178, 3061
BstPAI	GACNNNNGTC	1 cut(s)	1754
BstSCI	CCNGG	6 cut(s)	805, 950, 2046, 2354, 2527, 2837
BstSFI	CTRYAG	1 cut(s)	1799
BstSLI	GKGCMC	2 cut(s)	227, 1481
BstUI	CGCG	1 cut(s)	316
BstV1I	GCAGC	5 cut(s)	178, 908, 1130, 1581, 1785
BstV2I	GAAGAC	2 cut(s)	1643, 1971
BstX2I	RGATCY	3 cut(s)	1267, 1565, 2834
BstXI	CCANNNNNNTGG	1 cut(s)	473
BstYI	RGATCY	3 cut(s)	1267, 1565, 2834
BstZI	CGGCCG	1 cut(s)	317
BsuI	GTATCC	1 cut(s)	2835
BsuRI	GGCC	3 cut(s)	319, 829, 2527
BtgI	CCRYGG	1 cut(s)	2905
BtgZI	GCGATG	1 cut(s)	1954
BtrI	CACGTC	1 cut(s)	347
BtsCI	GGATG	4 cut(s)	1800, 2351, 2704, 2855
BtsI	GCAGTG	1 cut(s)	732
BtsIMutI	CAGTG	7 cut(s)	225, 648, 732, 1137, 1393, 1479, 1781
BveI	ACCTGC	1 cut(s)	2310
Cac8I	GCNNGC	9 cut(s)	176, 242, 831, 883, 1031, 1431, 1698, 2229, 3059
CaiI	CAGNNNCTG	2 cut(s)	358, 1535
CciI	TCATGA	4 cut(s)	1183, 1816, 3081, 3237
CciNI	GCGGCCGC	1 cut(s)	317
CfoI	GCGC	3 cut(s)	862, 1702, 2180
Cfr13I	GGNCC	4 cut(s)	764, 1207, 1399, 2893
Csp6I	GTAC	6 cut(s)	112, 356, 1148, 1678, 2365, 3113
CviQI	GTAC	6 cut(s)	112, 356, 1148, 1678, 2365, 3113
DdeI	CTNAG	8 cut(s)	306, 1056, 1151, 1271, 1335, 1703, 2598, 2802
DraI	TTTAAA	2 cut(s)	2136, 2632
DraIII	CACNNNGTG	1 cut(s)	2686
EaeI	YGGCCR	1 cut(s)	317
EagI	CGGCCG	1 cut(s)	317
Eam1104I	CTCTTC	6 cut(s)	89, 531, 549, 2516, 2562, 2648
EarI	CTCTTC	6 cut(s)	89, 531, 549, 2516, 2562, 2648
EciI	GGCGGA	2 cut(s)	212, 278
Ecl136II	GAGCTC	1 cut(s)	81
EclXI	CGGCCG	1 cut(s)	317
Eco130I	CCWWGG	1 cut(s)	2709
Eco147I	AGGCCT	1 cut(s)	2527
Eco24I	GRGCYC	3 cut(s)	83, 822, 2446
Eco31I	GGTCTC	1 cut(s)	2861
Eco47I	GGWCC	4 cut(s)	764, 1207, 1399, 2893
Eco47III	AGCGCT	1 cut(s)	1701
Eco52I	CGGCCG	1 cut(s)	317
Eco53kI	GAGCTC	1 cut(s)	81
Eco57I	CTGAAG	5 cut(s)	151, 249, 624, 2109, 2214
Eco88I	CYCGRG	1 cut(s)	82
EcoICRI	GAGCTC	1 cut(s)	81
EcoNI	CCTNNNNNAGG	1 cut(s)	2121
EcoRI	GAATTC	1 cut(s)	3191
EcoRII	CCWGG	4 cut(s)	805, 950, 2354, 2527
EcoT14I	CCWWGG	1 cut(s)	2709
EcoT38I	GRGCYC	3 cut(s)	83, 822, 2446
ErhI	CCWWGG	1 cut(s)	2709
FalI	AAGNNNNNCTT	6 cut(s)	440, 472, 806, 838, 1502, 1534
FaqI	GGGAC	4 cut(s)	357, 1699, 1985, 2706
FauI	CCCGC	3 cut(s)	126, 139, 3133
FauNDI	CATATG	2 cut(s)	1361, 1991
FbaI	TGATCA	1 cut(s)	3042
FokI	GGATG	4 cut(s)	1807, 2338, 2691, 2862
FriOI	GRGCYC	3 cut(s)	83, 822, 2446
FspBI	CTAG	5 cut(s)	414, 453, 485, 1752, 2483
GlaI	GCGC	3 cut(s)	861, 1701, 2179
GsaI	CCCAGC	1 cut(s)	1125
GsuI	CTGGAG	2 cut(s)	601, 1326
HaeII	RGCGCY	2 cut(s)	863, 1703
HaeIII	GGCC	3 cut(s)	319, 829, 2527
HhaI	GCGC	3 cut(s)	862, 1702, 2180
Hin1I	GRCGYC	1 cut(s)	335
Hin6I	GCGC	3 cut(s)	860, 1700, 2178
HinP1I	GCGC	3 cut(s)	860, 1700, 2178
HincII	GTYRAC	1 cut(s)	1341
HindII	GTYRAC	1 cut(s)	1341
HindIII	AAGCTT	1 cut(s)	2073
HinfI	GANTC	9 cut(s)	37, 62, 266, 377, 1142, 1245, 1375, 1532, 2476
HpaI	GTTAAC	1 cut(s)	1341
HphI	GGTGA	9 cut(s)	71, 172, 340, 437, 797, 2921, 2929, 3104, 3155
Hpy166II	GTNNAC	6 cut(s)	225, 1086, 1207, 1341, 1929, 2912
Hpy8I	GTNNAC	6 cut(s)	225, 1086, 1207, 1341, 1929, 2912
Hpy99I	CGWCG	1 cut(s)	340
HpyAV	CCTTC	9 cut(s)	196, 372, 1247, 1285, 1625, 1866, 2516, 2876, 2957
HpyCH4III	ACNGT	9 cut(s)	48, 1388, 1612, 1625, 1682, 2461, 2581, 2906, 2975
HpyCH4IV	ACGT	5 cut(s)	335, 346, 625, 2866, 3155
HpyF10VI	GCNNNNNNNGC	9 cut(s)	127, 171, 322, 627, 826, 1500, 1882, 2348, 2357
HpyF3I	CTNAG	8 cut(s)	306, 1056, 1151, 1271, 1335, 1703, 2598, 2802
HpySE526I	ACGT	5 cut(s)	335, 346, 625, 2866, 3155
Hsp92I	GRCGYC	1 cut(s)	335
HspAI	GCGC	3 cut(s)	860, 1700, 2178
Kpn2I	TCCGGA	1 cut(s)	250
KpnI	GGTACC	1 cut(s)	2368
Ksp22I	TGATCA	1 cut(s)	3042
KspAI	GTTAAC	1 cut(s)	1341
Lsp1109I	GCAGC	5 cut(s)	178, 908, 1130, 1581, 1785
LweI	GCATC	5 cut(s)	883, 1228, 1785, 2360, 3001
MaeI	CTAG	5 cut(s)	414, 453, 485, 1752, 2483
MaeII	ACGT	5 cut(s)	335, 346, 625, 2866, 3155
MaeIII	GTNAC	4 cut(s)	917, 1606, 1619, 2975
MbiI	CCGCTC	1 cut(s)	121
MfeI	CAATTG	1 cut(s)	3064
MflI	RGATCY	3 cut(s)	1267, 1565, 2834
MhlI	GDGCHC	7 cut(s)	83, 227, 242, 822, 1481, 2327, 2446
MlyI	GAGTC	5 cut(s)	46, 275, 371, 1254, 2470
MmeI	TCCRAC	2 cut(s)	2544, 2600
MroI	TCCGGA	1 cut(s)	250
MroXI	GAANNNNTTC	3 cut(s)	2571, 2718, 2735
MslI	CAYNNNNRTG	4 cut(s)	230, 641, 1353, 1821
MspA1I	CMGCKG	3 cut(s)	325, 1121, 1213
MspR9I	CCNGG	6 cut(s)	807, 952, 2048, 2356, 2529, 2839
MunI	CAATTG	1 cut(s)	3064
Mva1269I	GAATGC	2 cut(s)	1281, 2030
MvaI	CCWGG	4 cut(s)	807, 952, 2356, 2529
MvnI	CGCG	1 cut(s)	316
MwoI	GCNNNNNNNGC	9 cut(s)	127, 171, 322, 627, 826, 1500, 1882, 2348, 2357
NciI	CCSGG	2 cut(s)	2048, 2839
NdeI	CATATG	2 cut(s)	1361, 1991
NmeAIII	GCCGAG	2 cut(s)	60, 111
NotI	GCGGCCGC	1 cut(s)	317
NspI	RCATGY	5 cut(s)	1352, 1433, 2045, 2178, 3061
NspV	TTCGAA	1 cut(s)	2722
OliI	CACNNNNGTG	2 cut(s)	230, 641
PaeI	GCATGC	2 cut(s)	1433, 3061
PagI	TCATGA	4 cut(s)	1183, 1816, 3081, 3237
PaqCI	CACCTGC	1 cut(s)	2310
PceI	AGGCCT	1 cut(s)	2527
PciI	ACATGT	2 cut(s)	1348, 2041
PcsI	WCGNNNNNNNCGW	1 cut(s)	32
PctI	GAATGC	2 cut(s)	1281, 2030
PdmI	GAANNNNTTC	3 cut(s)	2571, 2718, 2735
PfeI	GAWTC	4 cut(s)	62, 1142, 1375, 1532
PflMI	CCANNNNNTGG	2 cut(s)	1743, 2689
PfoI	TCCNGGA	2 cut(s)	2046, 2837
PleI	GAGTC	5 cut(s)	45, 274, 371, 1253, 2470
PpsI	GAGTC	5 cut(s)	45, 274, 371, 1253, 2470
Ppu21I	YACGTR	2 cut(s)	626, 2867
PscI	ACATGT	2 cut(s)	1348, 2041
PshAI	GACNNNNGTC	1 cut(s)	1754
PsiI	TTATAA	2 cut(s)	597, 1464
Psp124BI	GAGCTC	1 cut(s)	83
Psp6I	CCWGG	4 cut(s)	805, 950, 2354, 2527
PspFI	CCCAGC	1 cut(s)	1121
PspGI	CCWGG	4 cut(s)	805, 950, 2354, 2527
PspPI	GGNCC	4 cut(s)	764, 1207, 1399, 2893
PstI	CTGCAG	1 cut(s)	1803
PstNI	CAGNNNCTG	2 cut(s)	358, 1535
PsuI	RGATCY	3 cut(s)	1267, 1565, 2834
PvuII	CAGCTG	2 cut(s)	1121, 1213
RsaI	GTAC	6 cut(s)	113, 357, 1149, 1679, 2366, 3114
RsaNI	GTAC	6 cut(s)	112, 356, 1148, 1678, 2365, 3113
RseI	CAYNNNNRTG	4 cut(s)	230, 641, 1353, 1821
SacI	GAGCTC	1 cut(s)	83
Sau96I	GGNCC	4 cut(s)	764, 1207, 1399, 2893
SchI	GAGTC	5 cut(s)	46, 275, 371, 1254, 2470
ScrFI	CCNGG	6 cut(s)	807, 952, 2048, 2356, 2529, 2839
SduI	GDGCHC	7 cut(s)	83, 227, 242, 822, 1481, 2327, 2446
SfaNI	GCATC	5 cut(s)	883, 1228, 1785, 2360, 3001
SfcI	CTRYAG	1 cut(s)	1799
SfuI	TTCGAA	1 cut(s)	2722
SinI	GGWCC	4 cut(s)	764, 1207, 1399, 2893
SmiMI	CAYNNNNRTG	4 cut(s)	230, 641, 1353, 1821
SmlI	CTYRAG	1 cut(s)	2242
SmoI	CTYRAG	1 cut(s)	2242
SpeI	ACTAGT	2 cut(s)	413, 1751
SphI	GCATGC	2 cut(s)	1433, 3061
SseBI	AGGCCT	1 cut(s)	2527
SspI	AATATT	1 cut(s)	2628
SspMI	CTAG	5 cut(s)	414, 453, 485, 1752, 2483
SstI	GAGCTC	1 cut(s)	83
StuI	AGGCCT	1 cut(s)	2527
StyD4I	CCNGG	6 cut(s)	805, 950, 2046, 2354, 2527, 2837
StyI	CCWWGG	1 cut(s)	2709
TaaI	ACNGT	9 cut(s)	48, 1388, 1612, 1625, 1682, 2461, 2581, 2906, 2975
TaiI	ACGT	5 cut(s)	338, 349, 628, 2869, 3158
TaqI	TCGA	5 cut(s)	269, 338, 506, 1191, 2722
TatI	WGTACW	1 cut(s)	3112
TauI	GCSGC	5 cut(s)	146, 197, 319, 322, 325
TfiI	GAWTC	4 cut(s)	62, 1142, 1375, 1532
TscAI	CASTG	7 cut(s)	232, 648, 732, 1137, 1393, 1486, 1788
TseI	GCWGC	5 cut(s)	191, 896, 1118, 1594, 1798
TspGWI	ACGGA	2 cut(s)	1135, 1885
TspRI	CASTG	7 cut(s)	232, 648, 732, 1137, 1393, 1486, 1788
Van91I	CCANNNNNTGG	2 cut(s)	1743, 2689
VneI	GTGCAC	1 cut(s)	223
VpaK11BI	GGWCC	4 cut(s)	764, 1207, 1399, 2893
XagI	CCTNNNNNAGG	1 cut(s)	2121
XapI	RAATTY	8 cut(s)	16, 53, 1469, 2257, 2292, 2735, 3191, 3233
XceI	RCATGY	5 cut(s)	1352, 1433, 2045, 2178, 3061
XmnI	GAANNNNTTC	3 cut(s)	2571, 2718, 2735
XspI	CTAG	5 cut(s)	414, 453, 485, 1752, 2483
ZraI	GACGTC	1 cut(s)	336

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.