Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0011056

Physical Location & Seq

Genomic Coordinates Forward (+)

66748494 .. 66755667

Gene Structure 7174 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G039150.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3192 bp

ATGATAATCAAGAAGAATTTGAAATCGCAAATGCCGAGTCTGAAACGGTGCAAATTCGGTGATTCGGAGGAGGACGAGAGCTCGGGGAGGAAGAAGAGGAGGACTAATGGGTACTACCCGCTCAATTTGCTCGGCGAGGTGGCGGCGGGGATTATTCCGGTGAGCTTCAGGGGCTTGCTTGGGTCGGTTGCTGCCGCGGAGAAGGGAGGAGGGTTTTCGTGGTGCACTGAAGTGTCGTGCTCGCCGCCTCCGGAGGAGGAGGCGGAGTCGAAATCGAAGGTATGCAAATCCGCAAAAGGAAAGGCTGAGGTTTCGCGGCCGCCGCTGGTGAGGACGTCGAGGGGACGTGTTCAGGTACTGCCTTCTCGGTTTAATGACTCGGTTATTGAGAATTGGAAGAAAGAGAGTAAGACTAGTTTGCGTGGTGATGGTAATGTTGAAGATGAGAAGCCTAGCTTGAAACCCCAGAAAAATGGAAAGAAGCTAGGGAATAATGTGTATGGCTCGAAGAAGCATTCGGGTTTGTGTGAGGAAGAAGAGGAGGAGGAGGAAGAAGAGGAGGAAGATGAAGATGGGTATGTGCCGTTTAAGAGTTATAACATGAGGAAGTACAACTCCAGCTCACGTAGCACACTCACTTCAGTGCATGAGCATTTGGTTGAAGACGACAAGTGTGCGGTTGTGGAGATTATTGAAGAAGAAGAAGAAGAAGATGATTTAGAGGGTGCAGTGAGGATTTCAAATCAGAGGACAGATGGGTTTGTGGGCAAAGCCAGGAAAAAGGAGCCCTTTTGGCCTGCCATTGTTATTGATCCAATGACACAAGCGCCGGAGCTGGTTTTGAGGGCTTGCGTACCTGATGCAGCTTGTGTCATGTTTTTCGGTTACTCTGGGAATGAGAACCAAAGGGATTATGCCTGGGTTAAAAGGGGATCACTTTTTCCATTTATGGATTATATAGACAGGTTTCGAGAGCAGTCTGAACTGGGCAACTGCAAGCCCTGTGATTTCCAGATGGCAACTGAGGAGGCATTTTTGGTGGATCAAGGGTTTACCGAGAAGTTGATAGCAGATATAAACATGGCAGCTGGGAACCCCGTGTATGATGAATCCGTACTTAGAGGAGTTCAAGAGGCTACTGGTTCAAATCATGATCTCGACTATCAGTTTGACATCTATCGGAAGAAGAAAGATGCAAGAGTCTGTGAAGGCTGTGGCTCGGATCTTAGAATGCCAAAGAAAATGAAGGTTTCAACTTCTGGAGGGCAATTCCTTTGTAAATCATGTGCTAAGTTAACAAAACATGTTTGTGGCATATGCAAGAAGTGGAATCAGCCTGACAGTGGAAGTTGGGTCCGGTGTGATGGTTGCAGAGTATGGGTGCATGCAGAATGTGATAGAATTAACACCAATTATTATAAGAATTTGGGGGGCACTGATTATTTCTGCCCTCCTTGCAAAGTAAAGTTTAACTTTGAATTGTCAGATTCTGAAAAGGAGCAACCAAAAGTCAAATCTACTAAAAATGAGGCACAACTGGTGCTACCTAACAAGGTTACTGTTCTCTGTAATGGTGTGGAAGGCATATATTTTCCAAGTCTTCACTCTGTTGTGTGCAAGTGTGGGTACTGTGGGACAGAAAAGCAAGCGCTTAGTGAATGGGAGCGACACACAGGTTCCAAGTCCAGAAATTGGAGGACTAGTGTCAGAGTTAAAGGCTCCTTACTGGCACTGGAACAATGGATGCTGCAGTTAGCAGAGTTTCATGAAAATGCTCTTGTGTCTGTTAAACCACCTAAACGACCTTCTATTAAAGAACGGAAGCAAAAATTGCTCACTTTTTTGCAAGAAAAGTATGAACCCGTTTATGCGAAGTGGACAACAGAGCGATGTGCTGTATGTAGATGGGTTGAAGACTGGGACTACAACAAAATCATCATATGCAACAGATGTCAAATAGCTGTTCATCAAGAATGCTATGGAGCAAGACATGTCCGGGATTTCACTTCATGGGTTTGCAAAGCATGTGAAACACCTGAAGTCAAGAGAGAATGTTGCCTCTGTCCTGTTAAAGGAGGTGCTTTAAAGCCAACTGATATTGAGACATTGTGGGTTCATATTACATGCGCTTGGTTCAGACCTGAAGTGTCGTTTGCAAGTGATGAGAAGATGGAGCCTGCTCTTGGTATCTTGAGTATTCCATCAAATTCTTTTGTCAAGATTTGTGTAATCTGTAAGCAAATTCATGGTTCATGCACACAATGTAGCAGGTGCTCCACTTATTACCATGCAATGTGTGCATCCAGGGCAGGGTACCGCATGGAGTTGCACTCTTTAGAGAAAAATGGGAAACAGATTACAAAAATGGTTTCTTATTGCGCTTATCACAGGGCTCCAAATCCAGATACGGTCTTAATTATACAGACTCCTCTAGGAGTGTTTTCAGCCAAAAGCCTTCTCCAAAGTAAGAAGAGGCCTGGTTCAAGGCTAATTTCATCTAATAGAATTAAGTTGGAAGAGGTTCCAACTGTTGAAACGACTGAACCTGAGCCATTATCTTCTGCAAGGTGCCGAATATTTAAAAGATTGAAAGATAGTAGGAAGAGAACAGAAGAAGAAGCTGTTGCCCACCAAGTGATGGGACATTCCCATCATCCCTTGGAAGCAATTCGAAGTTTGAACAAATTCAGAGTAGTAGAGGAACCTCTAACTTTTTCATCTTTTAGAGAACGGCTTTACCATTTACAGAGAACCGAAAAAGATCGTGTTTGCTTTGGTAGATCCGGGATACATGGATGGGGTCTCTTTGCACGTAGAAACATTCAAGAAGGAGAAATGGTCCTTGAATACCGTGGTGAACAGGTGAGGCGTAGTATTGCAGATTTGAGGGAGGCACGATATAGATCAGAAGGCAAAGACTGTTACCTTTTTAAGATTAGCGAAGAAGTGGTAGTAGATGCCACCGATAAAGGAAATATAGCACGGCTGATCAATCATTCGTGCATGCCCAATTGTTATGCGAGGATCATGAGTGTTGGTGATGAGGAAAGCCGGATTGTACTTATTGCAAAGACTAATGTATCTGCGGGTGACGAGCTAACGTATGATTACTTGTTTGATCCAAATGAGCCTGATGAATTCAAAGTTCCTTGTCTATGTAAAGCTCCCAACTGCCGGAAATTCATGAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005911 GO:0008150 GO:0009292 GO:0009294 GO:0009506 GO:0009893 GO:0009987 GO:0010604 GO:0010638 GO:0019222 GO:0030054 GO:0031056 GO:0031058 GO:0031060 GO:0031062 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0032268 GO:0032270 GO:0033043 GO:0033044 GO:0044764 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051569 GO:0051571 GO:0051704 GO:0055044 GO:0060255 GO:0065007 GO:0080090 GO:1902275 GO:1905269 GO:2001252

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PHD PHD_2 PWWP SET zf-HC5HC2H_2

Protein Analysis

1063

Amino Acids

120.8

Weight (kDa)

8.27

Isoelectric Point (pI)

51.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PWWP	PF00855	260 - 344	5.3e-10	PWWP domain
PHD	PF00628	437 - 486	2.4e-07	PHD-finger
PHD_2	PF13831	643 - 677	3e-11	PHD-finger
zf-HC5HC2H_2	PF13832	684 - 796	9.8e-28	PHD-zinc-finger like domain
zf-HC5HC2H	PF13771	706 - 797	3e-13	PHD-like zinc-binding domain
SET	PF00856	932 - 1037	7.5e-25	SET domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011056)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27910 AT5G53430
fragaria_vesca	FvH4_7g31710 FvH4_7g31710
malus_domestica	MD01G1220300.v1.1 MD07G1289800.v1.1
prunus_persica	Prupe.2G311000_v2.0.a1
pyrus_communis	pycom01g22990 pycom07g26250
rosa_chinensis	RchiOBHm_Chr1g0380901
rosa_laevigata	RLG00000026264
rosa_multiflora	Rmu_sc0002962.1_g000020
rosa_roxburghii	Rroxscaffold_4G00278980
rosa_rugosa	Rorug01G0425200 Rorug01G0425300
rosa_samantha	Rh1AG449100 Rh1BG404800 Rh1CG418800 Rh1DG435200
rosa_wichuraiana	Rw1G039150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	597, 1419
AarI	CACCTGC	1 cut(s)	2259
AatII	GACGTC	1 cut(s)	338
Acc36I	ACCTGC	1 cut(s)	2259
Acc65I	GGTACC	1 cut(s)	2313
AccB1I	GGYRCC	2 cut(s)	2313, 2568
AccB7I	CCANNNNNTGG	2 cut(s)	1692, 2638
AccBSI	CCGCTC	1 cut(s)	121
AccII	CGCG	2 cut(s)	197, 316
AccIII	TCCGGA	1 cut(s)	250
AclWI	GGATC	7 cut(s)	806, 940, 1050, 1230, 2775, 3032, 3113
AcoI	YGGCCR	1 cut(s)	317
AcsI	RAATTY	8 cut(s)	16, 53, 1423, 2206, 2241, 2684, 3137, 3179
AcuI	CTGAAG	5 cut(s)	151, 249, 624, 2058, 2163
AcyI	GRCGYC	1 cut(s)	335
AdeI	CACNNNGTG	1 cut(s)	2635
AfaI	GTAC	8 cut(s)	113, 357, 611, 855, 1116, 1628, 2315, 3060
AfeI	AGCGCT	1 cut(s)	1650
AfiI	CCNNNNNNNGG	7 cut(s)	1343, 1692, 2072, 2183, 2310, 2638, 3174
AflIII	ACRYGT	3 cut(s)	346, 1303, 1990
AhlI	ACTAGT	2 cut(s)	413, 1700
AjiI	CACGTC	1 cut(s)	347
AjnI	CCWGG	4 cut(s)	773, 917, 2303, 2476
AleI	CACNNNNGTG	2 cut(s)	230, 641
Alw21I	GWGCWC	4 cut(s)	83, 227, 242, 2276
Alw26I	GTCTC	2 cut(s)	2096, 2807
Alw44I	GTGCAC	1 cut(s)	223
AlwI	GGATC	7 cut(s)	806, 940, 1050, 1230, 2775, 3032, 3113
AlwNI	CAGNNNCTG	2 cut(s)	358, 1490
Ama87I	CYCGRG	1 cut(s)	82
Aor13HI	TCCGGA	1 cut(s)	250
Aor51HI	AGCGCT	1 cut(s)	1650
AoxI	GGCC	3 cut(s)	317, 794, 2474
ApaLI	GTGCAC	1 cut(s)	223
ApeKI	GCWGC	4 cut(s)	191, 863, 1085, 1747
ApoI	RAATTY	8 cut(s)	16, 53, 1423, 2206, 2241, 2684, 3137, 3179
ArsI	GACNNNNNNTTYG	4 cut(s)	22, 54, 1151, 1183
Asp700I	GAANNNNTTC	3 cut(s)	2520, 2667, 2684
Asp718I	GGTACC	1 cut(s)	2313
AspLEI	GCGC	4 cut(s)	829, 1651, 2129, 2381
AspS9I	GGNCC	2 cut(s)	1354, 2839
AsuC2I	CCSGG	2 cut(s)	1997, 2785
AsuHPI	GGTGA	8 cut(s)	71, 172, 340, 437, 2867, 2875, 3050, 3101
AsuII	TTCGAA	1 cut(s)	2671
AvaI	CYCGRG	1 cut(s)	82
AvaII	GGWCC	2 cut(s)	1354, 2839
BaeGI	GKGCMC	2 cut(s)	227, 1436
BaeI	ACNNNNGTAYC	2 cut(s)	3063, 3096
BanI	GGYRCC	2 cut(s)	2313, 2568
BanII	GRGCYC	3 cut(s)	83, 789, 2395
BbsI	GAAGAC	3 cut(s)	669, 1592, 1920
Bbv12I	GWGCWC	4 cut(s)	83, 227, 242, 2276
BbvCI	CCTCAGC	1 cut(s)	306
BbvI	GCAGC	4 cut(s)	178, 875, 1097, 1734
BceAI	ACGGC	3 cut(s)	568, 2747, 2999
BcgI	CGANNNNNNTGC	2 cut(s)	656, 690
BciT130I	CCWGG	4 cut(s)	775, 919, 2305, 2478
BciVI	GTATCC	1 cut(s)	2781
BclI	TGATCA	1 cut(s)	2988
BcnI	CCSGG	2 cut(s)	1997, 2785
BcoDI	GTCTC	2 cut(s)	2096, 2807
BcuI	ACTAGT	2 cut(s)	413, 1700
BfaI	CTAG	5 cut(s)	414, 453, 485, 1701, 2432
BfmI	CTRYAG	1 cut(s)	1748
BfoI	RGCGCY	2 cut(s)	830, 1652
BfuAI	ACCTGC	1 cut(s)	2259
BfuI	GTATCC	1 cut(s)	2781
BglI	GCCNNNNNGGC	1 cut(s)	793
Bme1390I	CCNGG	6 cut(s)	775, 919, 1997, 2305, 2478, 2785
Bme18I	GGWCC	2 cut(s)	1354, 2839
BmeT110I	CYCGRG	1 cut(s)	82
BmgBI	CACGTC	1 cut(s)	347
BmgT120I	GGNCC	2 cut(s)	1354, 2839
BmrFI	CCNGG	6 cut(s)	775, 919, 1997, 2305, 2478, 2785
BmrI	ACTGGG	2 cut(s)	995, 1927
BmsI	GCATC	5 cut(s)	850, 1183, 1734, 2309, 2947
BmuI	ACTGGG	2 cut(s)	995, 1927
BoxI	GACNNNNGTC	1 cut(s)	1703
BpiI	GAAGAC	3 cut(s)	669, 1592, 1920
BplI	GAGNNNNNCTC	2 cut(s)	2315, 2347
BpmI	CTGGAG	2 cut(s)	601, 1281
Bpu10I	CCTNAGC	2 cut(s)	306, 2547
Bpu14I	TTCGAA	1 cut(s)	2671
BpuEI	CTTGAG	1 cut(s)	2212
BpuMI	CCSGG	2 cut(s)	1997, 2785
BsaAI	YACGTR	2 cut(s)	626, 2813
BsaBI	GATNNNNATC	1 cut(s)	2902
BsaHI	GRCGYC	1 cut(s)	335
BsaI	GGTCTC	1 cut(s)	2807
BsaJI	CCNNGG	5 cut(s)	195, 918, 2304, 2658, 2851
BsaWI	WCCGGW	3 cut(s)	157, 250, 1356
BsaXI	ACNNNNNCTCC	6 cut(s)	251, 281, 1687, 1717, 2823, 2853
Bsc4I	CCNNNNNNNGG	7 cut(s)	1343, 1692, 2072, 2183, 2310, 2638, 3174
Bse1I	ACTGG	6 cut(s)	990, 1144, 1542, 1731, 1737, 1922
Bse3DI	GCAATG	1 cut(s)	2298
Bse8I	GATNNNNATC	1 cut(s)	2902
BseAI	TCCGGA	1 cut(s)	250
BseBI	CCWGG	4 cut(s)	775, 919, 2305, 2478
BseDI	CCNNGG	5 cut(s)	195, 918, 2304, 2658, 2851
BseGI	GGATG	4 cut(s)	1749, 2300, 2653, 2801
BseJI	GATNNNNATC	1 cut(s)	2902
BseLI	CCNNNNNNNGG	7 cut(s)	1343, 1692, 2072, 2183, 2310, 2638, 3174
BseMI	GCAATG	1 cut(s)	2298
BseMII	CTCAG	3 cut(s)	297, 1014, 2538
BseNI	ACTGG	6 cut(s)	990, 1144, 1542, 1731, 1737, 1922
BseSI	GKGCMC	2 cut(s)	227, 1436
BseX3I	CGGCCG	1 cut(s)	317
BseXI	GCAGC	4 cut(s)	178, 875, 1097, 1734
BseYI	CCCAGC	1 cut(s)	1088
BsgI	GTGCAG	1 cut(s)	747
Bsh1236I	CGCG	2 cut(s)	197, 316
Bsh1285I	CGRYCG	1 cut(s)	320
BshFI	GGCC	3 cut(s)	319, 796, 2476
BshNI	GGYRCC	2 cut(s)	2313, 2568
BsiEI	CGRYCG	1 cut(s)	320
BsiHKAI	GWGCWC	4 cut(s)	83, 227, 242, 2276
BsiHKCI	CYCGRG	1 cut(s)	82
BsiSI	CCGG	8 cut(s)	158, 251, 830, 1357, 1996, 2784, 3052, 3175
BslFI	GGGAC	4 cut(s)	357, 1648, 1934, 2655
BslI	CCNNNNNNNGG	7 cut(s)	1343, 1692, 2072, 2183, 2310, 2638, 3174
BsmAI	GTCTC	2 cut(s)	2096, 2807
BsmFI	GGGAC	4 cut(s)	357, 1648, 1934, 2655
BsmI	GAATGC	3 cut(s)	514, 1236, 1979
BsnI	GGCC	3 cut(s)	319, 796, 2476
Bso31I	GGTCTC	1 cut(s)	2807
BsoBI	CYCGRG	1 cut(s)	82
Bsp119I	TTCGAA	1 cut(s)	2671
Bsp1286I	GDGCHC	7 cut(s)	83, 227, 242, 789, 1436, 2276, 2395
Bsp13I	TCCGGA	1 cut(s)	250
BspANI	GGCC	3 cut(s)	319, 796, 2476
BspCNI	CTCAG	3 cut(s)	298, 1015, 2539
BspEI	TCCGGA	1 cut(s)	250
BspFNI	CGCG	2 cut(s)	197, 316
BspHI	TCATGA	4 cut(s)	1150, 1765, 3027, 3183
BspMAI	CTGCAG	1 cut(s)	1752
BspMI	ACCTGC	1 cut(s)	2259
BspPI	GGATC	7 cut(s)	806, 940, 1050, 1230, 2775, 3032, 3113
BspT104I	TTCGAA	1 cut(s)	2671
BspT107I	GGYRCC	2 cut(s)	2313, 2568
BspTNI	GGTCTC	1 cut(s)	2807
BsrBI	CCGCTC	1 cut(s)	121
BsrDI	GCAATG	1 cut(s)	2298
BsrI	ACTGG	6 cut(s)	990, 1144, 1542, 1731, 1737, 1922
BssECI	CCNNGG	5 cut(s)	195, 918, 2304, 2658, 2851
BssNI	GRCGYC	1 cut(s)	335
BssT1I	CCWWGG	1 cut(s)	2658
Bst2UI	CCWGG	4 cut(s)	775, 919, 2305, 2478
Bst4CI	ACNGT	8 cut(s)	48, 1343, 1561, 1631, 2410, 2530, 2852, 2921
Bst6I	CTCTTC	6 cut(s)	89, 531, 549, 2465, 2511, 2597
BstACI	GRCGYC	1 cut(s)	335
BstAPI	GCANNNNNTGC	2 cut(s)	1831, 2297
BstBAI	YACGTR	2 cut(s)	626, 2813
BstBI	TTCGAA	1 cut(s)	2671
BstC8I	GCNNGC	9 cut(s)	176, 242, 798, 850, 998, 1386, 1647, 2178, 3005
BstDEI	CTNAG	7 cut(s)	306, 1023, 1118, 1226, 1290, 1652, 2547
BstDSI	CCRYGG	2 cut(s)	195, 2851
BstENI	CCTNNNNNAGG	1 cut(s)	2070
BstF5I	GGATG	4 cut(s)	1749, 2300, 2653, 2801
BstFNI	CGCG	2 cut(s)	197, 316
BstH2I	RGCGCY	2 cut(s)	830, 1652
BstHHI	GCGC	4 cut(s)	829, 1651, 2129, 2381
BstMAI	GTCTC	2 cut(s)	2096, 2807
BstMCI	CGRYCG	1 cut(s)	320
BstMWI	GCNNNNNNNGC	9 cut(s)	127, 171, 322, 627, 793, 1455, 1831, 2297, 2306
BstNI	CCWGG	4 cut(s)	775, 919, 2305, 2478
BstNSI	RCATGY	6 cut(s)	1307, 1388, 1994, 2028, 2127, 3007
BstPAI	GACNNNNGTC	1 cut(s)	1703
BstSCI	CCNGG	6 cut(s)	773, 917, 1995, 2303, 2476, 2783
BstSFI	CTRYAG	1 cut(s)	1748
BstSLI	GKGCMC	2 cut(s)	227, 1436
BstUI	CGCG	2 cut(s)	197, 316
BstV1I	GCAGC	4 cut(s)	178, 875, 1097, 1734
BstV2I	GAAGAC	3 cut(s)	669, 1592, 1920
BstX2I	RGATCY	2 cut(s)	1222, 2780
BstXI	CCANNNNNNTGG	1 cut(s)	473
BstYI	RGATCY	2 cut(s)	1222, 2780
BstZI	CGGCCG	1 cut(s)	317
BsuI	GTATCC	1 cut(s)	2781
BsuRI	GGCC	3 cut(s)	319, 796, 2476
BtgI	CCRYGG	2 cut(s)	195, 2851
BtgZI	GCGATG	1 cut(s)	1903
BtrI	CACGTC	1 cut(s)	347
BtsCI	GGATG	4 cut(s)	1749, 2300, 2653, 2801
BtsI	GCAGTG	1 cut(s)	735
BtsIMutI	CAGTG	6 cut(s)	225, 648, 735, 1348, 1434, 1730
BveI	ACCTGC	1 cut(s)	2259
Cac8I	GCNNGC	9 cut(s)	176, 242, 798, 850, 998, 1386, 1647, 2178, 3005
CaiI	CAGNNNCTG	2 cut(s)	358, 1490
CciI	TCATGA	4 cut(s)	1150, 1765, 3027, 3183
CciNI	GCGGCCGC	1 cut(s)	317
CfoI	GCGC	4 cut(s)	829, 1651, 2129, 2381
Cfr13I	GGNCC	2 cut(s)	1354, 2839
Cfr42I	CCGCGG	1 cut(s)	198
Csp6I	GTAC	8 cut(s)	112, 356, 610, 854, 1115, 1627, 2314, 3059
CviQI	GTAC	8 cut(s)	112, 356, 610, 854, 1115, 1627, 2314, 3059
DdeI	CTNAG	7 cut(s)	306, 1023, 1118, 1226, 1290, 1652, 2547
DraI	TTTAAA	2 cut(s)	2085, 2581
DraIII	CACNNNGTG	1 cut(s)	2635
EaeI	YGGCCR	1 cut(s)	317
EagI	CGGCCG	1 cut(s)	317
Eam1104I	CTCTTC	6 cut(s)	89, 531, 549, 2465, 2511, 2597
EarI	CTCTTC	6 cut(s)	89, 531, 549, 2465, 2511, 2597
EciI	GGCGGA	1 cut(s)	278
Ecl136II	GAGCTC	1 cut(s)	81
EclXI	CGGCCG	1 cut(s)	317
Eco130I	CCWWGG	1 cut(s)	2658
Eco147I	AGGCCT	1 cut(s)	2476
Eco24I	GRGCYC	3 cut(s)	83, 789, 2395
Eco31I	GGTCTC	1 cut(s)	2807
Eco47I	GGWCC	2 cut(s)	1354, 2839
Eco47III	AGCGCT	1 cut(s)	1650
Eco52I	CGGCCG	1 cut(s)	317
Eco53kI	GAGCTC	1 cut(s)	81
Eco57I	CTGAAG	5 cut(s)	151, 249, 624, 2058, 2163
Eco88I	CYCGRG	1 cut(s)	82
EcoICRI	GAGCTC	1 cut(s)	81
EcoNI	CCTNNNNNAGG	1 cut(s)	2070
EcoRI	GAATTC	1 cut(s)	3137
EcoRII	CCWGG	4 cut(s)	773, 917, 2303, 2476
EcoT14I	CCWWGG	1 cut(s)	2658
EcoT38I	GRGCYC	3 cut(s)	83, 789, 2395
ErhI	CCWWGG	1 cut(s)	2658
FalI	AAGNNNNNCTT	6 cut(s)	440, 472, 773, 805, 1457, 1489
FaqI	GGGAC	4 cut(s)	357, 1648, 1934, 2655
FauI	CCCGC	3 cut(s)	126, 139, 3079
FauNDI	CATATG	2 cut(s)	1316, 1940
FbaI	TGATCA	1 cut(s)	2988
FokI	GGATG	4 cut(s)	1756, 2287, 2640, 2808
FriOI	GRGCYC	3 cut(s)	83, 789, 2395
FspBI	CTAG	5 cut(s)	414, 453, 485, 1701, 2432
GlaI	GCGC	4 cut(s)	828, 1650, 2128, 2380
GsaI	CCCAGC	1 cut(s)	1092
GsuI	CTGGAG	2 cut(s)	601, 1281
HaeII	RGCGCY	2 cut(s)	830, 1652
HaeIII	GGCC	3 cut(s)	319, 796, 2476
HapII	CCGG	8 cut(s)	158, 251, 830, 1357, 1996, 2784, 3052, 3175
HhaI	GCGC	4 cut(s)	829, 1651, 2129, 2381
Hin1I	GRCGYC	1 cut(s)	335
Hin6I	GCGC	4 cut(s)	827, 1649, 2127, 2379
HinP1I	GCGC	4 cut(s)	827, 1649, 2127, 2379
HincII	GTYRAC	1 cut(s)	1296
HindII	GTYRAC	1 cut(s)	1296
HinfI	GANTC	9 cut(s)	37, 62, 266, 377, 1109, 1200, 1330, 1487, 2425
HpaI	GTTAAC	1 cut(s)	1296
HpaII	CCGG	8 cut(s)	158, 251, 830, 1357, 1996, 2784, 3052, 3175
HphI	GGTGA	8 cut(s)	71, 172, 340, 437, 2867, 2875, 3050, 3101
Hpy166II	GTNNAC	5 cut(s)	225, 1053, 1296, 1878, 2858
Hpy8I	GTNNAC	5 cut(s)	225, 1053, 1296, 1878, 2858
Hpy99I	CGWCG	1 cut(s)	340
HpyCH4III	ACNGT	8 cut(s)	48, 1343, 1561, 1631, 2410, 2530, 2852, 2921
HpyCH4IV	ACGT	5 cut(s)	335, 346, 625, 2812, 3101
HpyF10VI	GCNNNNNNNGC	9 cut(s)	127, 171, 322, 627, 793, 1455, 1831, 2297, 2306
HpyF3I	CTNAG	7 cut(s)	306, 1023, 1118, 1226, 1290, 1652, 2547
HpySE526I	ACGT	5 cut(s)	335, 346, 625, 2812, 3101
Hsp92I	GRCGYC	1 cut(s)	335
HspAI	GCGC	4 cut(s)	827, 1649, 2127, 2379
Kpn2I	TCCGGA	1 cut(s)	250
KpnI	GGTACC	1 cut(s)	2317
Ksp22I	TGATCA	1 cut(s)	2988
KspAI	GTTAAC	1 cut(s)	1296
KspI	CCGCGG	1 cut(s)	198
Lsp1109I	GCAGC	4 cut(s)	178, 875, 1097, 1734
LweI	GCATC	5 cut(s)	850, 1183, 1734, 2309, 2947
MaeI	CTAG	5 cut(s)	414, 453, 485, 1701, 2432
MaeII	ACGT	5 cut(s)	335, 346, 625, 2812, 3101
MaeIII	GTNAC	4 cut(s)	884, 1555, 2921, 3089
MbiI	CCGCTC	1 cut(s)	121
MfeI	CAATTG	1 cut(s)	3010
MflI	RGATCY	2 cut(s)	1222, 2780
MhlI	GDGCHC	7 cut(s)	83, 227, 242, 789, 1436, 2276, 2395
MlyI	GAGTC	5 cut(s)	46, 275, 371, 1209, 2419
MmeI	TCCRAC	2 cut(s)	2493, 2549
MroI	TCCGGA	1 cut(s)	250
MroXI	GAANNNNTTC	3 cut(s)	2520, 2667, 2684
MslI	CAYNNNNRTG	4 cut(s)	230, 641, 1308, 1770
MspA1I	CMGCKG	3 cut(s)	197, 325, 1088
MspI	CCGG	8 cut(s)	158, 251, 830, 1357, 1996, 2784, 3052, 3175
MspR9I	CCNGG	6 cut(s)	775, 919, 1997, 2305, 2478, 2785
MunI	CAATTG	1 cut(s)	3010
Mva1269I	GAATGC	3 cut(s)	514, 1236, 1979
MvaI	CCWGG	4 cut(s)	775, 919, 2305, 2478
MvnI	CGCG	2 cut(s)	197, 316
MwoI	GCNNNNNNNGC	9 cut(s)	127, 171, 322, 627, 793, 1455, 1831, 2297, 2306
NciI	CCSGG	2 cut(s)	1997, 2785
NdeI	CATATG	2 cut(s)	1316, 1940
NmeAIII	GCCGAG	2 cut(s)	60, 111
NmuCI	GTSAC	1 cut(s)	3089
NotI	GCGGCCGC	1 cut(s)	317
NspI	RCATGY	6 cut(s)	1307, 1388, 1994, 2028, 2127, 3007
NspV	TTCGAA	1 cut(s)	2671
OliI	CACNNNNGTG	2 cut(s)	230, 641
PaeI	GCATGC	2 cut(s)	1388, 3007
PagI	TCATGA	4 cut(s)	1150, 1765, 3027, 3183
PaqCI	CACCTGC	1 cut(s)	2259
PceI	AGGCCT	1 cut(s)	2476
PciI	ACATGT	2 cut(s)	1303, 1990
PcsI	WCGNNNNNNNCGW	1 cut(s)	32
PctI	GAATGC	3 cut(s)	514, 1236, 1979
PdmI	GAANNNNTTC	3 cut(s)	2520, 2667, 2684
PfeI	GAWTC	4 cut(s)	62, 1109, 1330, 1487
PflMI	CCANNNNNTGG	2 cut(s)	1692, 2638
PfoI	TCCNGGA	2 cut(s)	1995, 2783
PleI	GAGTC	5 cut(s)	45, 274, 371, 1208, 2419
PpsI	GAGTC	5 cut(s)	45, 274, 371, 1208, 2419
Ppu21I	YACGTR	2 cut(s)	626, 2813
PscI	ACATGT	2 cut(s)	1303, 1990
PshAI	GACNNNNGTC	1 cut(s)	1703
PsiI	TTATAA	2 cut(s)	597, 1419
Psp124BI	GAGCTC	1 cut(s)	83
Psp6I	CCWGG	4 cut(s)	773, 917, 2303, 2476
PspFI	CCCAGC	1 cut(s)	1088
PspGI	CCWGG	4 cut(s)	773, 917, 2303, 2476
PspPI	GGNCC	2 cut(s)	1354, 2839
PstI	CTGCAG	1 cut(s)	1752
PstNI	CAGNNNCTG	2 cut(s)	358, 1490
PsuI	RGATCY	2 cut(s)	1222, 2780
PvuII	CAGCTG	1 cut(s)	1088
RsaI	GTAC	8 cut(s)	113, 357, 611, 855, 1116, 1628, 2315, 3060
RsaNI	GTAC	8 cut(s)	112, 356, 610, 854, 1115, 1627, 2314, 3059
RseI	CAYNNNNRTG	4 cut(s)	230, 641, 1308, 1770
SacI	GAGCTC	1 cut(s)	83
SacII	CCGCGG	1 cut(s)	198
Sau96I	GGNCC	2 cut(s)	1354, 2839
SchI	GAGTC	5 cut(s)	46, 275, 371, 1209, 2419
ScrFI	CCNGG	6 cut(s)	775, 919, 1997, 2305, 2478, 2785
SduI	GDGCHC	7 cut(s)	83, 227, 242, 789, 1436, 2276, 2395
SfaNI	GCATC	5 cut(s)	850, 1183, 1734, 2309, 2947
SfcI	CTRYAG	1 cut(s)	1748
Sfr303I	CCGCGG	1 cut(s)	198
SfuI	TTCGAA	1 cut(s)	2671
SgrBI	CCGCGG	1 cut(s)	198
SinI	GGWCC	2 cut(s)	1354, 2839
SmiMI	CAYNNNNRTG	4 cut(s)	230, 641, 1308, 1770
SmlI	CTYRAG	1 cut(s)	2191
SmoI	CTYRAG	1 cut(s)	2191
SpeI	ACTAGT	2 cut(s)	413, 1700
SphI	GCATGC	2 cut(s)	1388, 3007
SseBI	AGGCCT	1 cut(s)	2476
SspI	AATATT	1 cut(s)	2577
SspMI	CTAG	5 cut(s)	414, 453, 485, 1701, 2432
SstI	GAGCTC	1 cut(s)	83
StuI	AGGCCT	1 cut(s)	2476
StyD4I	CCNGG	6 cut(s)	773, 917, 1995, 2303, 2476, 2783
StyI	CCWWGG	1 cut(s)	2658
TaaI	ACNGT	8 cut(s)	48, 1343, 1561, 1631, 2410, 2530, 2852, 2921
TaiI	ACGT	5 cut(s)	338, 349, 628, 2815, 3104
TaqI	TCGA	7 cut(s)	269, 275, 338, 506, 970, 1158, 2671
TatI	WGTACW	2 cut(s)	609, 3058
TauI	GCSGC	6 cut(s)	146, 197, 247, 319, 322, 325
TfiI	GAWTC	4 cut(s)	62, 1109, 1330, 1487
TscAI	CASTG	6 cut(s)	232, 648, 735, 1348, 1441, 1737
TseFI	GTSAC	1 cut(s)	3089
TseI	GCWGC	4 cut(s)	191, 863, 1085, 1747
Tsp45I	GTSAC	1 cut(s)	3089
TspGWI	ACGGA	2 cut(s)	1102, 1834
TspRI	CASTG	6 cut(s)	232, 648, 735, 1348, 1441, 1737
Van91I	CCANNNNNTGG	2 cut(s)	1692, 2638
VneI	GTGCAC	1 cut(s)	223
VpaK11BI	GGWCC	2 cut(s)	1354, 2839
XagI	CCTNNNNNAGG	1 cut(s)	2070
XapI	RAATTY	8 cut(s)	16, 53, 1423, 2206, 2241, 2684, 3137, 3179
XceI	RCATGY	6 cut(s)	1307, 1388, 1994, 2028, 2127, 3007
XmnI	GAANNNNTTC	3 cut(s)	2520, 2667, 2684
XspI	CTAG	5 cut(s)	414, 453, 485, 1701, 2432
ZraI	GACGTC	1 cut(s)	336

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.