Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0011056

Physical Location & Seq

Genomic Coordinates Reverse (-)

1736804 .. 1743235

Gene Structure 6432 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000026264

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3126 bp

ATGCCGAGTCTGAAACGGTGCAAATTCGGTGATTCGGAGGAGGACGAGAGCTCGGGGAGGAAGAAGAGGAGGACTAATGGGTACTACCCGCTCAATTTGCTCGGCGAGGTGGCGGCGGGGATTATTCCGGTGAGCTTCAGGGGCTTGCTTGGTTCGGTTGCTGCGGCGGCGGAGAAGGGAGGAGGGTTTTCGTGGTGCACTGAAGTGTCGTGCTCGCCACCTCCGGAGGAGGAGGCGGAGTCGAAATCAAAGGTATGCAAATCCGCAAAAGGAAAGGCTGAAGTTTCGCGGCCGCCGCTGGTGAGGACGTCGAGGGGACGTGTTCAGGTACTTCCTTCTCGGTTTAATGACTCGGTTATTGAGAATTGGAAGAAAGAGAGTAAGACTAGTTTGCGTGGTGATAGTAATGTTGAAGATGAGAAGCCTAGCTTGAAACCCCAGAAAAATGGAAAGAAGCTAGGGAATAATGTGTATGGCTCGAAGAAGTATTCGGGTTTGTGTGAGGAAGAGGAGGAGGAGGAGGAAGAAGAGGAGGAAGATGAAGATGGGTATGTGCCGTTTAAGAGTTATAACATGAGGAAGTATAACTCCAGCTCACGCAGCACACTCACTTCAGTGCATGAGCATTTGGTTGAAGATGACAAGTGTGCGGTTGTGGAGATTATTGAAGAAGAAGAAGAAGATGATTTAGAGGGTGCAGTGAAGATTTCAAATCAGAGGACAGATGGGTTGTATGGACCGGAGGACTTTTATTCCGGTGATATAGTGTGGGCAAAGCCAGGGAAAAAGGAGCCCTTTTGGCCTGCCATTGTTATTGATCCAATGACACAAGCGCCGGAGCTGGTTTTGAGGGCTTGCGTACCTGATGCAGCTTGTGTCATGTTTTTCGGTTACTCTGGGAATGAGAACCAAAGGGATTATGCCTGGGTTAAAAGGGGATCACTTTTTCCATTTATGGATTATATAGACAGGTTTCAAGAGCAGTCTGAACTGGGCAACTGCAAGCCCTGTGATTTCCAGATGGCAACTGAGGAGGCATTTTTGGTGGATCAAGGGTTTACCGAGAAGTTGATAGCAGATATAAACATGGCAGCTGGGAACCCAGTGTATGATGAATCCGTACTTAGAGGAGTTCAAGAGGCTACTGGTTCAAATCATGATCTTGACTATCAGTTTGTGGACCAGGACATCTATCGGAAGAAGAAAGATGCAAGAGTCTGTGAAGGCTGTGGCTCGGATCTTAGAATGCCAAAGAAAATGAAGGTTTCAACTTCTGGAGGGCAATTCCTTTGTAAATCATGTGCTAAGTTAACAAAACATGTTTGTGGCATATGCAAGAAGTGGAATCAGCCTGACAGTGGAAGTTGGGTCCGGTGTGATGGTTGCAGAGTATGGGTGCATGCAGAATGTGATAGAATTAACACCAATTATTATAAGAATTTGGGGGGCACTGATTATTTCTGCCCTCCTTGCAAAGTAAAGTTTAATTTTGAATTGTCAGATTCTGAAAAGGAGCAACCAAAAGTCAAGTGTAGATCTACTAAAAATGAGGCACAACTGGTGCTGCCTAACAAGGTTACTGTTCTCTGTAACGGTGTAGAAGGCATATATTTTCCAAGTCTTCACTCTGTTGTGTGCAAGTGTGGGTACTGTGGGACAGAAAAGCAAGCGCTTAGTGAATGGGAGCGACACACAGGTTCCAAGTCCAGAAATTGGAGGACTAGTGTCAGAGTTAAAGGCTCCTTACTGGCACTGGAACAATGGATGCTGCAGTTAGCAGAGTTTCATGAAAATGCTCTTGTGTCTGTTAAACCACCTAAACGACCTTCTATTAAAGAACGGAAGCAAAAATTGCTCACTTTTTTGCAAGGTAATTTTGTTTTATGTCAAATAGCTGTTCATCAAGAATGCTATGGAGCAAGACATGTCCGGGATTTCACTTCATGGGTTTGCAAAGCATGTGAAACACCTGAAGTCAAGAGAGAATGTTGCCTCTGTCCTGTTAAAGGAGGTGCTTTAAAGCCAACTGATATTGAGACATTGTGGGTTCATATTACATGTGCTTGGTTCAGACCTGAAGTGTCGTTTGCAAGTGATGAGAAGATGGAGCCTGCTCTTGGTATCTTGAGTATTCCATCAAATTCTTTTGTCAAGATTTGTGTAATCTGTAAGCAAATTCATGGTTCATGCACACAATGTAGCAGGTGCTCCACTTATTACCATGCAATGTGTGCATCCAGGGCAGGGTACCGCATGGAGTTGCACTCTTTAGAGAAAAATGGGAAACAGATTACAAAAATGGTTTCCTATTGCGCTTATCACAGGGCTCCAAATCCAGATACGGTCTTAATTATACAGACTCCTCTAGGAGTGTTTTCAGCCAAAAGCCTTCTCCAAAGTAAGAAGAGGCCTGGTTCAAGGCTAATTTCATCTAATAGAATTAAGTTGGAAGAGGTTCCAACTGTTGAAACAACTGAACCTGAGCCATTATCTTCTGCAAGGTGCCGAATATTTAAAAGATTGAAAGATAGTAGGAAGAGAACAGAAGAAGAAGCTGTTGCCCACCAAGTGATGGGACATTCCCATCATCCCTTGGAAGCAATTCGAAGTTTGAACAAATTCAGAGTAGTAGAGGAACCTCTAACTTTTTCATCTTTTAGAGAACGGCTTTACCATTTACAGAGAACCGAAAAAGGCCGTGTTTGCTTTGGTAGATCCGGGATACATGGATGGGGTCTCTTTGCACGTAGAAACATTCAAGAAGGAGAAATGGTCCTTGAATACCGTGGTGAACAGGTGAGGCGTAGTATTGCAGATTTGAGGGAGGCACGATATAGATCAGAAGGCAAAGACTGTTACCTTTTCAAGATTAGCGAAGAAGTGGTAGTAGATGCCACCGATAAAGGAAATATAGCACGGCTGATCAATCATTCGTGCATGCCCAATTGTTATGCAAGGATCATGAGTGTTGGTGATGAGGAAAGCCGGATTGTACTTATTGCAAAGACTAATGTATCTGCGGGTGACGAGCTAACGTATGATTACTTGTTTGATCCAAATGAGCCTGATGAATTCAAAGTTCCTTGTCTATGTAAAGCTCCCAACTGCCGGAAATTCATGAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005911 GO:0008150 GO:0009292 GO:0009294 GO:0009506 GO:0009893 GO:0009987 GO:0010604 GO:0010638 GO:0019222 GO:0030054 GO:0031056 GO:0031058 GO:0031060 GO:0031062 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0032268 GO:0032270 GO:0033043 GO:0033044 GO:0044764 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051569 GO:0051571 GO:0051704 GO:0055044 GO:0060255 GO:0065007 GO:0080090 GO:1902275 GO:1905269 GO:2001252

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PHD PHD_2 PWWP SET zf-HC5HC2H_2

Protein Analysis

1042

Amino Acids

117.7

Weight (kDa)

7.89

Isoelectric Point (pI)

51.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PWWP	PF00855	253 - 346	1e-13	PWWP domain
PHD	PF00628	442 - 491	2.3e-07	PHD-finger
PHD_2	PF13831	629 - 655	6.6e-07	PHD-finger
zf-HC5HC2H_2	PF13832	662 - 774	9.5e-28	PHD-zinc-finger like domain
zf-HC5HC2H	PF13771	684 - 775	2.9e-13	PHD-like zinc-binding domain
SET	PF00856	910 - 1015	7.3e-25	SET domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011056)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27910 AT5G53430
fragaria_vesca	FvH4_7g31710 FvH4_7g31710
malus_domestica	MD01G1220300.v1.1 MD07G1289800.v1.1
prunus_persica	Prupe.2G311000_v2.0.a1
pyrus_communis	pycom01g22990 pycom07g26250
rosa_chinensis	RchiOBHm_Chr1g0380901
rosa_laevigata	RLG00000026264
rosa_multiflora	Rmu_sc0002962.1_g000020
rosa_roxburghii	Rroxscaffold_4G00278980
rosa_rugosa	Rorug01G0425200 Rorug01G0425300
rosa_samantha	Rh1AG449100 Rh1BG404800 Rh1CG418800 Rh1DG435200
rosa_wichuraiana	Rw1G039150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	570, 1434
AarI	CACCTGC	1 cut(s)	2193
AatII	GACGTC	1 cut(s)	311
Acc36I	ACCTGC	1 cut(s)	2193
Acc65I	GGTACC	1 cut(s)	2247
AccB1I	GGYRCC	2 cut(s)	2247, 2502
AccB7I	CCANNNNNTGG	2 cut(s)	1713, 2572
AccBSI	CCGCTC	1 cut(s)	91
AccII	CGCG	1 cut(s)	289
AccIII	TCCGGA	1 cut(s)	223
AclWI	GGATC	7 cut(s)	812, 946, 1056, 1245, 2709, 2966, 3047
AcoI	YGGCCR	1 cut(s)	290
AcsI	RAATTY	7 cut(s)	23, 1438, 2140, 2175, 2618, 3071, 3113
AcuI	CTGAAG	6 cut(s)	121, 222, 300, 597, 1992, 2097
AcyI	GRCGYC	1 cut(s)	308
AdeI	CACNNNGTG	1 cut(s)	2569
AfaI	GTAC	7 cut(s)	83, 330, 861, 1122, 1649, 2249, 2994
AfeI	AGCGCT	1 cut(s)	1671
AfiI	CCNNNNNNNGG	7 cut(s)	1358, 1713, 2006, 2117, 2244, 2572, 3108
AflIII	ACRYGT	4 cut(s)	319, 1318, 1924, 2057
AhlI	ACTAGT	2 cut(s)	386, 1721
AjiI	CACGTC	1 cut(s)	320
AjnI	CCWGG	5 cut(s)	778, 923, 1182, 2237, 2410
AleI	CACNNNNGTG	2 cut(s)	203, 614
Alw21I	GWGCWC	4 cut(s)	53, 200, 215, 2210
Alw26I	GTCTC	2 cut(s)	2030, 2741
Alw44I	GTGCAC	1 cut(s)	196
AlwI	GGATC	7 cut(s)	812, 946, 1056, 1245, 2709, 2966, 3047
AlwNI	CAGNNNCTG	1 cut(s)	1505
Ama87I	CYCGRG	1 cut(s)	52
Aor13HI	TCCGGA	1 cut(s)	223
Aor51HI	AGCGCT	1 cut(s)	1671
AoxI	GGCC	4 cut(s)	290, 800, 2408, 2695
ApaLI	GTGCAC	1 cut(s)	196
ApeKI	GCWGC	6 cut(s)	161, 600, 869, 1091, 1564, 1768
ApoI	RAATTY	7 cut(s)	23, 1438, 2140, 2175, 2618, 3071, 3113
ArsI	GACNNNNNNTTYG	2 cut(s)	1157, 1189
Asp700I	GAANNNNTTC	3 cut(s)	2454, 2601, 2618
Asp718I	GGTACC	1 cut(s)	2247
AspLEI	GCGC	3 cut(s)	835, 1672, 2315
AspS9I	GGNCC	4 cut(s)	737, 1180, 1369, 2773
AsuC2I	CCSGG	2 cut(s)	1931, 2719
AsuHPI	GGTGA	9 cut(s)	41, 142, 313, 410, 770, 2801, 2809, 2984, 3035
AsuII	TTCGAA	1 cut(s)	2605
AvaI	CYCGRG	1 cut(s)	52
AvaII	GGWCC	4 cut(s)	737, 1180, 1369, 2773
BaeGI	GKGCMC	2 cut(s)	200, 1451
BaeI	ACNNNNGTAYC	2 cut(s)	2997, 3030
BanI	GGYRCC	2 cut(s)	2247, 2502
BanII	GRGCYC	3 cut(s)	53, 795, 2329
BbsI	GAAGAC	1 cut(s)	1613
Bbv12I	GWGCWC	4 cut(s)	53, 200, 215, 2210
BbvI	GCAGC	6 cut(s)	148, 612, 881, 1103, 1551, 1755
BccI	CCATC	9 cut(s)	539, 719, 1015, 1373, 2098, 2143, 2566, 2592, 2724
BceAI	ACGGC	4 cut(s)	541, 2681, 2682, 2933
BciT130I	CCWGG	5 cut(s)	780, 925, 1184, 2239, 2412
BciVI	GTATCC	1 cut(s)	2715
BclI	TGATCA	1 cut(s)	2922
BcnI	CCSGG	2 cut(s)	1931, 2719
BcoDI	GTCTC	2 cut(s)	2030, 2741
BcuI	ACTAGT	2 cut(s)	386, 1721
BfaI	CTAG	5 cut(s)	387, 426, 458, 1722, 2366
BfmI	CTRYAG	1 cut(s)	1769
BfoI	RGCGCY	2 cut(s)	836, 1673
BfuAI	ACCTGC	1 cut(s)	2193
BfuI	GTATCC	1 cut(s)	2715
BglI	GCCNNNNNGGC	1 cut(s)	799
BglII	AGATCT	1 cut(s)	1535
Bme1390I	CCNGG	7 cut(s)	780, 925, 1184, 1931, 2239, 2412, 2719
Bme18I	GGWCC	4 cut(s)	737, 1180, 1369, 2773
BmeT110I	CYCGRG	1 cut(s)	52
BmgBI	CACGTC	1 cut(s)	320
BmgT120I	GGNCC	4 cut(s)	737, 1180, 1369, 2773
BmrFI	CCNGG	7 cut(s)	780, 925, 1184, 1931, 2239, 2412, 2719
BmrI	ACTGGG	2 cut(s)	1001, 1097
BmsI	GCATC	5 cut(s)	856, 1198, 1755, 2243, 2881
BmuI	ACTGGG	2 cut(s)	1001, 1097
BoxI	GACNNNNGTC	1 cut(s)	1724
BpiI	GAAGAC	1 cut(s)	1613
BplI	GAGNNNNNCTC	2 cut(s)	2249, 2281
BpmI	CTGGAG	2 cut(s)	574, 1296
Bpu10I	CCTNAGC	1 cut(s)	2481
Bpu14I	TTCGAA	1 cut(s)	2605
BpuEI	CTTGAG	1 cut(s)	2146
BpuMI	CCSGG	2 cut(s)	1931, 2719
BsaAI	YACGTR	1 cut(s)	2747
BsaBI	GATNNNNATC	1 cut(s)	2836
BsaHI	GRCGYC	1 cut(s)	308
BsaI	GGTCTC	1 cut(s)	2741
BsaJI	CCNNGG	5 cut(s)	779, 924, 2238, 2592, 2785
BsaWI	WCCGGW	5 cut(s)	127, 223, 739, 755, 1371
BsaXI	ACNNNNNCTCC	6 cut(s)	224, 254, 1708, 1738, 2757, 2787
Bsc4I	CCNNNNNNNGG	7 cut(s)	1358, 1713, 2006, 2117, 2244, 2572, 3108
Bse1I	ACTGG	6 cut(s)	996, 1103, 1150, 1563, 1752, 1758
Bse3DI	GCAATG	1 cut(s)	2232
Bse8I	GATNNNNATC	1 cut(s)	2836
BseAI	TCCGGA	1 cut(s)	223
BseBI	CCWGG	5 cut(s)	780, 925, 1184, 2239, 2412
BseDI	CCNNGG	5 cut(s)	779, 924, 2238, 2592, 2785
BseGI	GGATG	4 cut(s)	1770, 2234, 2587, 2735
BseJI	GATNNNNATC	1 cut(s)	2836
BseLI	CCNNNNNNNGG	7 cut(s)	1358, 1713, 2006, 2117, 2244, 2572, 3108
BseMI	GCAATG	1 cut(s)	2232
BseMII	CTCAG	2 cut(s)	1020, 2472
BseNI	ACTGG	6 cut(s)	996, 1103, 1150, 1563, 1752, 1758
BseSI	GKGCMC	2 cut(s)	200, 1451
BseX3I	CGGCCG	1 cut(s)	290
BseXI	GCAGC	6 cut(s)	148, 612, 881, 1103, 1551, 1755
BseYI	CCCAGC	1 cut(s)	1094
BsgI	GTGCAG	1 cut(s)	717
Bsh1236I	CGCG	1 cut(s)	289
Bsh1285I	CGRYCG	1 cut(s)	293
BshFI	GGCC	4 cut(s)	292, 802, 2410, 2697
BshNI	GGYRCC	2 cut(s)	2247, 2502
BsiEI	CGRYCG	1 cut(s)	293
BsiHKAI	GWGCWC	4 cut(s)	53, 200, 215, 2210
BsiHKCI	CYCGRG	1 cut(s)	52
BslFI	GGGAC	3 cut(s)	330, 1669, 2589
BslI	CCNNNNNNNGG	7 cut(s)	1358, 1713, 2006, 2117, 2244, 2572, 3108
BsmAI	GTCTC	2 cut(s)	2030, 2741
BsmFI	GGGAC	3 cut(s)	330, 1669, 2589
BsmI	GAATGC	2 cut(s)	1251, 1913
BsnI	GGCC	4 cut(s)	292, 802, 2410, 2697
Bso31I	GGTCTC	1 cut(s)	2741
BsoBI	CYCGRG	1 cut(s)	52
Bsp119I	TTCGAA	1 cut(s)	2605
Bsp1286I	GDGCHC	7 cut(s)	53, 200, 215, 795, 1451, 2210, 2329
Bsp13I	TCCGGA	1 cut(s)	223
BspANI	GGCC	4 cut(s)	292, 802, 2410, 2697
BspCNI	CTCAG	2 cut(s)	1021, 2473
BspEI	TCCGGA	1 cut(s)	223
BspFNI	CGCG	1 cut(s)	289
BspHI	TCATGA	4 cut(s)	1156, 1786, 2961, 3117
BspMAI	CTGCAG	1 cut(s)	1773
BspMI	ACCTGC	1 cut(s)	2193
BspPI	GGATC	7 cut(s)	812, 946, 1056, 1245, 2709, 2966, 3047
BspT104I	TTCGAA	1 cut(s)	2605
BspT107I	GGYRCC	2 cut(s)	2247, 2502
BspTNI	GGTCTC	1 cut(s)	2741
BsrBI	CCGCTC	1 cut(s)	91
BsrDI	GCAATG	1 cut(s)	2232
BsrI	ACTGG	6 cut(s)	996, 1103, 1150, 1563, 1752, 1758
BssECI	CCNNGG	5 cut(s)	779, 924, 2238, 2592, 2785
BssNI	GRCGYC	1 cut(s)	308
BssT1I	CCWWGG	1 cut(s)	2592
Bst2UI	CCWGG	5 cut(s)	780, 925, 1184, 2239, 2412
Bst4CI	ACNGT	9 cut(s)	18, 1358, 1582, 1595, 1652, 2344, 2464, 2786, 2855
Bst6I	CTCTTC	6 cut(s)	59, 501, 522, 2399, 2445, 2531
BstACI	GRCGYC	1 cut(s)	308
BstAPI	GCANNNNNTGC	2 cut(s)	1852, 2231
BstBAI	YACGTR	1 cut(s)	2747
BstBI	TTCGAA	1 cut(s)	2605
BstC8I	GCNNGC	9 cut(s)	146, 215, 804, 856, 1004, 1401, 1668, 2112, 2939
BstDEI	CTNAG	6 cut(s)	1029, 1124, 1241, 1305, 1673, 2481
BstDSI	CCRYGG	1 cut(s)	2785
BstENI	CCTNNNNNAGG	1 cut(s)	2004
BstF5I	GGATG	4 cut(s)	1770, 2234, 2587, 2735
BstFNI	CGCG	1 cut(s)	289
BstH2I	RGCGCY	2 cut(s)	836, 1673
BstHHI	GCGC	3 cut(s)	835, 1672, 2315
BstMAI	GTCTC	2 cut(s)	2030, 2741
BstMCI	CGRYCG	1 cut(s)	293
BstNI	CCWGG	5 cut(s)	780, 925, 1184, 2239, 2412
BstNSI	RCATGY	6 cut(s)	1322, 1403, 1928, 1962, 2061, 2941
BstPAI	GACNNNNGTC	1 cut(s)	1724
BstSCI	CCNGG	7 cut(s)	778, 923, 1182, 1929, 2237, 2410, 2717
BstSFI	CTRYAG	1 cut(s)	1769
BstSLI	GKGCMC	2 cut(s)	200, 1451
BstUI	CGCG	1 cut(s)	289
BstV1I	GCAGC	6 cut(s)	148, 612, 881, 1103, 1551, 1755
BstV2I	GAAGAC	1 cut(s)	1613
BstX2I	RGATCY	3 cut(s)	1237, 1535, 2714
BstXI	CCANNNNNNTGG	1 cut(s)	446
BstYI	RGATCY	3 cut(s)	1237, 1535, 2714
BstZI	CGGCCG	1 cut(s)	290
BsuI	GTATCC	1 cut(s)	2715
BsuRI	GGCC	4 cut(s)	292, 802, 2410, 2697
BtgI	CCRYGG	1 cut(s)	2785
BtrI	CACGTC	1 cut(s)	320
BtsCI	GGATG	4 cut(s)	1770, 2234, 2587, 2735
BtsI	GCAGTG	1 cut(s)	705
BtsIMutI	CAGTG	7 cut(s)	198, 621, 705, 1110, 1363, 1449, 1751
BveI	ACCTGC	1 cut(s)	2193
Cac8I	GCNNGC	9 cut(s)	146, 215, 804, 856, 1004, 1401, 1668, 2112, 2939
CaiI	CAGNNNCTG	1 cut(s)	1505
CciI	TCATGA	4 cut(s)	1156, 1786, 2961, 3117
CciNI	GCGGCCGC	1 cut(s)	290
CfoI	GCGC	3 cut(s)	835, 1672, 2315
Cfr13I	GGNCC	4 cut(s)	737, 1180, 1369, 2773
Csp6I	GTAC	7 cut(s)	82, 329, 860, 1121, 1648, 2248, 2993
CviQI	GTAC	7 cut(s)	82, 329, 860, 1121, 1648, 2248, 2993
DdeI	CTNAG	6 cut(s)	1029, 1124, 1241, 1305, 1673, 2481
DraI	TTTAAA	2 cut(s)	2019, 2515
DraIII	CACNNNGTG	1 cut(s)	2569
EaeI	YGGCCR	1 cut(s)	290
EagI	CGGCCG	1 cut(s)	290
Eam1104I	CTCTTC	6 cut(s)	59, 501, 522, 2399, 2445, 2531
EarI	CTCTTC	6 cut(s)	59, 501, 522, 2399, 2445, 2531
EciI	GGCGGA	2 cut(s)	185, 251
Ecl136II	GAGCTC	1 cut(s)	51
EclXI	CGGCCG	1 cut(s)	290
Eco130I	CCWWGG	1 cut(s)	2592
Eco147I	AGGCCT	1 cut(s)	2410
Eco24I	GRGCYC	3 cut(s)	53, 795, 2329
Eco31I	GGTCTC	1 cut(s)	2741
Eco47I	GGWCC	4 cut(s)	737, 1180, 1369, 2773
Eco47III	AGCGCT	1 cut(s)	1671
Eco52I	CGGCCG	1 cut(s)	290
Eco53kI	GAGCTC	1 cut(s)	51
Eco57I	CTGAAG	6 cut(s)	121, 222, 300, 597, 1992, 2097
Eco88I	CYCGRG	1 cut(s)	52
EcoICRI	GAGCTC	1 cut(s)	51
EcoNI	CCTNNNNNAGG	1 cut(s)	2004
EcoRI	GAATTC	1 cut(s)	3071
EcoRII	CCWGG	5 cut(s)	778, 923, 1182, 2237, 2410
EcoT14I	CCWWGG	1 cut(s)	2592
EcoT38I	GRGCYC	3 cut(s)	53, 795, 2329
ErhI	CCWWGG	1 cut(s)	2592
FalI	AAGNNNNNCTT	4 cut(s)	413, 445, 779, 811
FaqI	GGGAC	3 cut(s)	330, 1669, 2589
FauI	CCCGC	3 cut(s)	96, 109, 3013
FauNDI	CATATG	1 cut(s)	1331
FbaI	TGATCA	1 cut(s)	2922
FokI	GGATG	4 cut(s)	1777, 2221, 2574, 2742
FriOI	GRGCYC	3 cut(s)	53, 795, 2329
FspBI	CTAG	5 cut(s)	387, 426, 458, 1722, 2366
GlaI	GCGC	3 cut(s)	834, 1671, 2314
GsaI	CCCAGC	1 cut(s)	1098
GsuI	CTGGAG	2 cut(s)	574, 1296
HaeII	RGCGCY	2 cut(s)	836, 1673
HaeIII	GGCC	4 cut(s)	292, 802, 2410, 2697
HhaI	GCGC	3 cut(s)	835, 1672, 2315
Hin1I	GRCGYC	1 cut(s)	308
Hin6I	GCGC	3 cut(s)	833, 1670, 2313
HinP1I	GCGC	3 cut(s)	833, 1670, 2313
HincII	GTYRAC	1 cut(s)	1311
HindII	GTYRAC	1 cut(s)	1311
HinfI	GANTC	9 cut(s)	7, 32, 239, 350, 1115, 1215, 1345, 1502, 2359
HpaI	GTTAAC	1 cut(s)	1311
HphI	GGTGA	9 cut(s)	41, 142, 313, 410, 770, 2801, 2809, 2984, 3035
Hpy166II	GTNNAC	5 cut(s)	198, 1059, 1180, 1311, 2792
Hpy8I	GTNNAC	5 cut(s)	198, 1059, 1180, 1311, 2792
Hpy99I	CGWCG	1 cut(s)	313
HpyAV	CCTTC	9 cut(s)	169, 345, 1217, 1255, 1595, 1836, 2399, 2756, 2837
HpyCH4III	ACNGT	9 cut(s)	18, 1358, 1582, 1595, 1652, 2344, 2464, 2786, 2855
HpyCH4IV	ACGT	4 cut(s)	308, 319, 2746, 3035
HpyF3I	CTNAG	6 cut(s)	1029, 1124, 1241, 1305, 1673, 2481
HpySE526I	ACGT	4 cut(s)	308, 319, 2746, 3035
Hsp92I	GRCGYC	1 cut(s)	308
HspAI	GCGC	3 cut(s)	833, 1670, 2313
Kpn2I	TCCGGA	1 cut(s)	223
KpnI	GGTACC	1 cut(s)	2251
Ksp22I	TGATCA	1 cut(s)	2922
KspAI	GTTAAC	1 cut(s)	1311
Lsp1109I	GCAGC	6 cut(s)	148, 612, 881, 1103, 1551, 1755
LweI	GCATC	5 cut(s)	856, 1198, 1755, 2243, 2881
MaeI	CTAG	5 cut(s)	387, 426, 458, 1722, 2366
MaeII	ACGT	4 cut(s)	308, 319, 2746, 3035
MaeIII	GTNAC	5 cut(s)	890, 1576, 1589, 2855, 3023
MbiI	CCGCTC	1 cut(s)	91
MfeI	CAATTG	1 cut(s)	2944
MflI	RGATCY	3 cut(s)	1237, 1535, 2714
MhlI	GDGCHC	7 cut(s)	53, 200, 215, 795, 1451, 2210, 2329
MlyI	GAGTC	5 cut(s)	16, 248, 344, 1224, 2353
MmeI	TCCRAC	2 cut(s)	2427, 2483
MroI	TCCGGA	1 cut(s)	223
MroXI	GAANNNNTTC	3 cut(s)	2454, 2601, 2618
MslI	CAYNNNNRTG	4 cut(s)	203, 614, 1323, 1791
MspA1I	CMGCKG	2 cut(s)	298, 1094
MspR9I	CCNGG	7 cut(s)	780, 925, 1184, 1931, 2239, 2412, 2719
MunI	CAATTG	1 cut(s)	2944
Mva1269I	GAATGC	2 cut(s)	1251, 1913
MvaI	CCWGG	5 cut(s)	780, 925, 1184, 2239, 2412
MvnI	CGCG	1 cut(s)	289
NciI	CCSGG	2 cut(s)	1931, 2719
NdeI	CATATG	1 cut(s)	1331
NmeAIII	GCCGAG	2 cut(s)	30, 81
NmuCI	GTSAC	1 cut(s)	3023
NotI	GCGGCCGC	1 cut(s)	290
NspI	RCATGY	6 cut(s)	1322, 1403, 1928, 1962, 2061, 2941
NspV	TTCGAA	1 cut(s)	2605
OliI	CACNNNNGTG	2 cut(s)	203, 614
PaeI	GCATGC	2 cut(s)	1403, 2941
PagI	TCATGA	4 cut(s)	1156, 1786, 2961, 3117
PaqCI	CACCTGC	1 cut(s)	2193
PceI	AGGCCT	1 cut(s)	2410
PciI	ACATGT	3 cut(s)	1318, 1924, 2057
PctI	GAATGC	2 cut(s)	1251, 1913
PdmI	GAANNNNTTC	3 cut(s)	2454, 2601, 2618
PfeI	GAWTC	4 cut(s)	32, 1115, 1345, 1502
PflMI	CCANNNNNTGG	2 cut(s)	1713, 2572
PfoI	TCCNGGA	2 cut(s)	1929, 2717
PleI	GAGTC	5 cut(s)	15, 247, 344, 1223, 2353
PpsI	GAGTC	5 cut(s)	15, 247, 344, 1223, 2353
Ppu21I	YACGTR	1 cut(s)	2747
PscI	ACATGT	3 cut(s)	1318, 1924, 2057
PshAI	GACNNNNGTC	1 cut(s)	1724
PsiI	TTATAA	2 cut(s)	570, 1434
Psp124BI	GAGCTC	1 cut(s)	53
Psp6I	CCWGG	5 cut(s)	778, 923, 1182, 2237, 2410
PspFI	CCCAGC	1 cut(s)	1094
PspGI	CCWGG	5 cut(s)	778, 923, 1182, 2237, 2410
PspPI	GGNCC	4 cut(s)	737, 1180, 1369, 2773
PstI	CTGCAG	1 cut(s)	1773
PstNI	CAGNNNCTG	1 cut(s)	1505
PsuI	RGATCY	3 cut(s)	1237, 1535, 2714
PvuII	CAGCTG	1 cut(s)	1094
RsaI	GTAC	7 cut(s)	83, 330, 861, 1122, 1649, 2249, 2994
RsaNI	GTAC	7 cut(s)	82, 329, 860, 1121, 1648, 2248, 2993
RseI	CAYNNNNRTG	4 cut(s)	203, 614, 1323, 1791
SacI	GAGCTC	1 cut(s)	53
Sau96I	GGNCC	4 cut(s)	737, 1180, 1369, 2773
SchI	GAGTC	5 cut(s)	16, 248, 344, 1224, 2353
ScrFI	CCNGG	7 cut(s)	780, 925, 1184, 1931, 2239, 2412, 2719
SduI	GDGCHC	7 cut(s)	53, 200, 215, 795, 1451, 2210, 2329
SfaNI	GCATC	5 cut(s)	856, 1198, 1755, 2243, 2881
SfcI	CTRYAG	1 cut(s)	1769
SfuI	TTCGAA	1 cut(s)	2605
SinI	GGWCC	4 cut(s)	737, 1180, 1369, 2773
SmiMI	CAYNNNNRTG	4 cut(s)	203, 614, 1323, 1791
SmlI	CTYRAG	1 cut(s)	2125
SmoI	CTYRAG	1 cut(s)	2125
SpeI	ACTAGT	2 cut(s)	386, 1721
SphI	GCATGC	2 cut(s)	1403, 2941
SseBI	AGGCCT	1 cut(s)	2410
SspI	AATATT	1 cut(s)	2511
SspMI	CTAG	5 cut(s)	387, 426, 458, 1722, 2366
SstI	GAGCTC	1 cut(s)	53
StuI	AGGCCT	1 cut(s)	2410
StyD4I	CCNGG	7 cut(s)	778, 923, 1182, 1929, 2237, 2410, 2717
StyI	CCWWGG	1 cut(s)	2592
TaaI	ACNGT	9 cut(s)	18, 1358, 1582, 1595, 1652, 2344, 2464, 2786, 2855
TaiI	ACGT	4 cut(s)	311, 322, 2749, 3038
TaqI	TCGA	4 cut(s)	242, 311, 479, 2605
TatI	WGTACW	1 cut(s)	2992
TauI	GCSGC	6 cut(s)	116, 167, 170, 292, 295, 298
TfiI	GAWTC	4 cut(s)	32, 1115, 1345, 1502
TscAI	CASTG	7 cut(s)	205, 621, 705, 1110, 1363, 1456, 1758
TseFI	GTSAC	1 cut(s)	3023
TseI	GCWGC	6 cut(s)	161, 600, 869, 1091, 1564, 1768
Tsp45I	GTSAC	1 cut(s)	3023
TspGWI	ACGGA	2 cut(s)	1108, 1855
TspRI	CASTG	7 cut(s)	205, 621, 705, 1110, 1363, 1456, 1758
Van91I	CCANNNNNTGG	2 cut(s)	1713, 2572
VneI	GTGCAC	1 cut(s)	196
VpaK11BI	GGWCC	4 cut(s)	737, 1180, 1369, 2773
XagI	CCTNNNNNAGG	1 cut(s)	2004
XapI	RAATTY	7 cut(s)	23, 1438, 2140, 2175, 2618, 3071, 3113
XceI	RCATGY	6 cut(s)	1322, 1403, 1928, 1962, 2061, 2941
XmnI	GAANNNNTTC	3 cut(s)	2454, 2601, 2618
XspI	CTAG	5 cut(s)	387, 426, 458, 1722, 2366
ZraI	GACGTC	1 cut(s)	309

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.