Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0011056

Physical Location & Seq

Genomic Coordinates Forward (+)

67932025 .. 67939393

Gene Structure 7369 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG418800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3099 bp

ATGATAATCAAGAAGAATTTGAAATCGCAAATGCCGAGTCTGAAACGGTGCAAATTCGGTGATTCGGAGGAGGACGAGAGCTCGGGGAGGAAGAAGAGGAGGACTAATGGGTACTACCCGCTCAATTTGCTCGGCGAGGTGGCGGCGGGGATTATTCCGGTGAGCTTCAGGGGCTTGCTTGGGTCGGTTGCTGCGGCGGAGAAGGGAGGAGGGTTTTCGTGGTGCACTGAAGTGTCGTGCTCGCCACCTCCGGAGGAGGAGGCGGAGTCGAAATCGAAGGTATGCAAATCCGCAAAAGGAAAGGCTGAGGTTTCGCGGCCGCCGCTGGTGAGGACGTCCAGGGGACGTGTTCAGGTACTGCCTTCTCGGTTTAATGACTCGGTTATTGAGAATTGGAAGAAAGAGAGTAAGACTAGTTTGCGTGGTGATGGTAATGTTGAAGATGAGAAGCCCAGCTTGAAACCCCAGAAAAATGGAAAGAAGCTAGGGAATAATGTGTATGGCTCGAAGAAGTATTCGGGTTTGTGTGAGGAAGAAGAGGAGGAGGAGGAAGAAGAGGAGGAAGATGAAGATGGGTATGTGCCGTTTAAGAGTTATAACATGAGGAAGTATAACTCCAGCTCACGTAGCACACTCACTTCAGTGCATGAGCATTTGGTTGAAGATGACAAGTGTGCGGTTGTGGAGATTGTTGAAGAAGAAGAAGAAGATGATTTAGAGGGTGCAGTGAGGATTTCAAATCAGAGGACAGATGGGTTGTATGGACCGGAGGACTTTTATTCCGGTGATATAGTGTGGGCAAAGCCAGGGAAAAAGGAGCCCTTTTGGCCTGCCATTGTTATTGATCCAATGACACAAGCGCCGGAGCTGGTTTTGAGGGCTTGCGTACCTGATGCAGCTTGTGTCATGTTTTTCGGTTACTCTGGGAATGAGAACCAAAGGGATTATGCCTGGGTTAAAAGGGGATCACTTTTTCCATTTATGGATTATATAGACAGGTTTCGAGAGCAGTCTGAACTGGGCAACTGCAAGCCCTGTGATTTCCAGATGGCAACTGAGGAGGCATTTTTGGTGGATCAAGGGTTTACCGAGAAGTTGATAGCAGATATAAACATGGCAGCTGGGAACCCAGTGTATGATGAATCCGTACTTAGAGGAGTTCAAGAGGCTACTGGTTCAAATCATGATCTCGACTATCAGTTTGTGGACCAGGACATCTATCGGAAGAAGAAAGACGCAAGAGTCTGTGAAGGCTGTGGCTCGGATCTTAGAATGCCAAAGAAAATGAAGGTTTCAACTTCTGGAGGGCAATTCCTTTGTAAATCATGTGCTAAGTTAACAAAACATGTTTGTGGCATATGCAAGAAGTGGAATCAGCCTGACAGTGGAACTTGGGTCCGGTGTGATGGTTGCAGAGTATGGGTGCATGCAGAATGTGATAGAATTAACACCAATTATTATAAGAATTTGGGGGGCACTGATTATTTCTGCCCTCCTTGCAAAGTAAAGTTTAACTTTGAATTGTCAGATTCTGAAAAGGAGCAACCAAAAGTCAAGTGTAGATCTACTAAAAATGAGGCACAACTAGTGCTGCCTAACAAGGTTACTGTTCTCTGTAACGGTGTGGAAGGCATATATTTTCCAAGTCTTCACTCTGTTGTGTGCAAGTGTGGGTACTGTGGGACAGAAAAGCAAGCGCTTAGTGAATGGGAGCGACACACAGGTTCCAAGTCCAGAAATTGGAGGACTAGTGTCAGAGTTAAAGGCTCCTTACTGGCACTGGAACAATGGATGCTGCAGTTAGCAGAGTTTCATGAAAATGCTCTTGTGTCTGTTAAACCACCTAAACGACCTTCTATTAAAGAACGGAAGCAAAAATTGCTCACTTTTTTGCAAGAAAAGTATGAACCCGTTTATGCGAAGTGGACAACAGAGCGATGTGCTGTATGTAGATGGGTTGAAGACTGGGACTACAACAAAATCATCATATGCAACAGATGTCAAATAGCTGTTCATCAAGAATGCTATGGAGCAAGACATGTCCGGGATTTCACTTCATGGGTCTGCAAAGCATGTGAAACACCTGAAGTCAAGAGAGAATGTTGCCTCTGTCCTGTTAAAGGAGGTGCTTTAAAGCCAACTGATATTGAGACATTGTGGGTTCATATTACATGCGCTTGGTTCAGACCTGAAGTGTCGTTTGCAAGTGATGAGAAGATGGAGCCTGCTCTTGGTATCTTGAGTATTCCATCAAATTCTTTTGTCAAGATTTGTGTAATCTGTAAGCAAATTCATGGTTCATGCACACAATGTAGCAGGTGCTCCACTTATTACCATGCAATGTGTGCATCCAGGGCAGGGTACCGCATGGAGTTGCACTCTTTAGAGAAAAATGGGAAACAGATTACAAAAATGGTTTCCTATTGCGCTTATCACAGGGCTCCAAATCCAGATACGGTCTTAATTATACAGACTCCTCTAGGAGTGTTTTCAGCCAAAAGCCTTCTCCAAAGTAAGAAGAGGCCTGGTTCAAGGCTAATTTCATCTAATAGAATTAAGTTGGAAGAGGTTCCAACTGTTGAAACGACTGAACCTGAGCCATTATCTTCTGCAAGGTGCCGAATATTTAAAAGATTGAAAGATAGTAGGAAGAGAACAGAAGAAGAAGCTGTTGCCCACCAAGTGATGGGACATTCCCATCATCCCTTGGAAGCAATTCGAAGTTTGAACAAATTCAGAGTAGTAGAGGAACCTCTAACTTTTTCATCTTTTAGAGAACGGCTTTACCATTTACAGAGAACCGAAAAAGATCGTGTTTGCTTTGGTAGATCCGGGATACATGGATGGGGTCTCTTTGCACGTAGAAACATTCAAGAAGGAGAAATGGTCCTTGAATACCGTGGTGAACAGGTGAGGCGTAGTATTGCAGATTTGAGGGAGGCACGATATAGATCAGAAGGCAAAGACTGTTATCTTTTTAAGATTAGCGAAGAAGTGGTAGTAGATGCCACCGATAAAGGAAATATAGCACGGCTGATCAATCATTCGGTAAGACTTTCTGATGAAGGAAGCCTTTTTGCCTGTTGTTGCCAGTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005911 GO:0008150 GO:0009292 GO:0009294 GO:0009506 GO:0009893 GO:0009987 GO:0010604 GO:0010638 GO:0019222 GO:0030054 GO:0031056 GO:0031058 GO:0031060 GO:0031062 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0032268 GO:0032270 GO:0033043 GO:0033044 GO:0044764 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051569 GO:0051571 GO:0051704 GO:0055044 GO:0060255 GO:0065007 GO:0080090 GO:1902275 GO:1905269 GO:2001252

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PHD PHD_2 PWWP SET zf-HC5HC2H_2

Protein Analysis

1032

Amino Acids

117.21

Weight (kDa)

8.23

Isoelectric Point (pI)

49.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PWWP	PF00855	262 - 355	1.4e-13	PWWP domain
PHD	PF00628	451 - 500	2e-07	PHD-finger
PHD_2	PF13831	659 - 693	2.9e-11	PHD-finger
zf-HC5HC2H_2	PF13832	700 - 812	9.4e-28	PHD-zinc-finger like domain
zf-HC5HC2H	PF13771	722 - 813	2.9e-13	PHD-like zinc-binding domain
SET	PF00856	948 - 1017	4.8e-11	SET domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011056)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27910 AT5G53430
fragaria_vesca	FvH4_7g31710 FvH4_7g31710
malus_domestica	MD01G1220300.v1.1 MD07G1289800.v1.1
prunus_persica	Prupe.2G311000_v2.0.a1
pyrus_communis	pycom01g22990 pycom07g26250
rosa_chinensis	RchiOBHm_Chr1g0380901
rosa_laevigata	RLG00000026264
rosa_multiflora	Rmu_sc0002962.1_g000020
rosa_roxburghii	Rroxscaffold_4G00278980
rosa_rugosa	Rorug01G0425200 Rorug01G0425300
rosa_samantha	Rh1AG449100 Rh1BG404800 Rh1CG418800 Rh1DG435200
rosa_wichuraiana	Rw1G039150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	597, 1461
AarI	CACCTGC	1 cut(s)	2307
AasI	GACNNNNNNGTC	1 cut(s)	1241
AatII	GACGTC	1 cut(s)	338
Acc36I	ACCTGC	1 cut(s)	2307
Acc65I	GGTACC	1 cut(s)	2361
AccB1I	GGYRCC	2 cut(s)	2361, 2616
AccB7I	CCANNNNNTGG	2 cut(s)	1740, 2686
AccBSI	CCGCTC	1 cut(s)	121
AccII	CGCG	1 cut(s)	316
AccIII	TCCGGA	1 cut(s)	250
AclWI	GGATC	5 cut(s)	839, 973, 1083, 1272, 2823
AcoI	YGGCCR	1 cut(s)	317
AcsI	RAATTY	6 cut(s)	16, 53, 1465, 2254, 2289, 2732
AcuI	CTGAAG	5 cut(s)	151, 249, 624, 2106, 2211
AcyI	GRCGYC	1 cut(s)	335
AdeI	CACNNNGTG	1 cut(s)	2683
AfaI	GTAC	6 cut(s)	113, 357, 888, 1149, 1676, 2363
AfeI	AGCGCT	1 cut(s)	1698
AfiI	CCNNNNNNNGG	6 cut(s)	1385, 1740, 2120, 2231, 2358, 2686
AflIII	ACRYGT	3 cut(s)	346, 1345, 2038
AhlI	ACTAGT	3 cut(s)	413, 1585, 1748
AjiI	CACGTC	1 cut(s)	347
AjnI	CCWGG	6 cut(s)	338, 805, 950, 1209, 2351, 2524
AleI	CACNNNNGTG	2 cut(s)	230, 641
Alw21I	GWGCWC	4 cut(s)	83, 227, 242, 2324
Alw26I	GTCTC	2 cut(s)	2144, 2855
Alw44I	GTGCAC	1 cut(s)	223
AlwI	GGATC	5 cut(s)	839, 973, 1083, 1272, 2823
AlwNI	CAGNNNCTG	2 cut(s)	358, 1532
Ama87I	CYCGRG	1 cut(s)	82
Aor13HI	TCCGGA	1 cut(s)	250
Aor51HI	AGCGCT	1 cut(s)	1698
AoxI	GGCC	3 cut(s)	317, 827, 2522
ApaLI	GTGCAC	1 cut(s)	223
ApeKI	GCWGC	5 cut(s)	191, 896, 1118, 1591, 1795
ApoI	RAATTY	6 cut(s)	16, 53, 1465, 2254, 2289, 2732
ArsI	GACNNNNNNTTYG	4 cut(s)	22, 54, 1184, 1216
Asp700I	GAANNNNTTC	3 cut(s)	2568, 2715, 2732
Asp718I	GGTACC	1 cut(s)	2361
AspLEI	GCGC	4 cut(s)	862, 1699, 2177, 2429
AspS9I	GGNCC	4 cut(s)	764, 1207, 1396, 2887
AsuC2I	CCSGG	2 cut(s)	2045, 2833
AsuHPI	GGTGA	7 cut(s)	71, 172, 340, 437, 797, 2915, 2923
AsuII	TTCGAA	1 cut(s)	2719
AvaI	CYCGRG	1 cut(s)	82
AvaII	GGWCC	4 cut(s)	764, 1207, 1396, 2887
BaeGI	GKGCMC	2 cut(s)	227, 1478
BanI	GGYRCC	2 cut(s)	2361, 2616
BanII	GRGCYC	3 cut(s)	83, 822, 2443
BbsI	GAAGAC	2 cut(s)	1640, 1968
Bbv12I	GWGCWC	4 cut(s)	83, 227, 242, 2324
BbvCI	CCTCAGC	1 cut(s)	306
BbvI	GCAGC	5 cut(s)	178, 908, 1130, 1578, 1782
BceAI	ACGGC	3 cut(s)	568, 2795, 3047
BciT130I	CCWGG	6 cut(s)	340, 807, 952, 1211, 2353, 2526
BciVI	GTATCC	1 cut(s)	2829
BclI	TGATCA	1 cut(s)	3036
BcnI	CCSGG	2 cut(s)	2045, 2833
BcoDI	GTCTC	2 cut(s)	2144, 2855
BcuI	ACTAGT	3 cut(s)	413, 1585, 1748
BfaI	CTAG	5 cut(s)	414, 485, 1586, 1749, 2480
BfmI	CTRYAG	1 cut(s)	1796
BfoI	RGCGCY	2 cut(s)	863, 1700
BfuAI	ACCTGC	1 cut(s)	2307
BfuI	GTATCC	1 cut(s)	2829
BglI	GCCNNNNNGGC	1 cut(s)	826
BglII	AGATCT	1 cut(s)	1562
Bme1390I	CCNGG	8 cut(s)	340, 807, 952, 1211, 2045, 2353, 2526, 2833
Bme18I	GGWCC	4 cut(s)	764, 1207, 1396, 2887
BmeT110I	CYCGRG	1 cut(s)	82
BmgBI	CACGTC	1 cut(s)	347
BmgT120I	GGNCC	4 cut(s)	764, 1207, 1396, 2887
BmrFI	CCNGG	8 cut(s)	340, 807, 952, 1211, 2045, 2353, 2526, 2833
BmrI	ACTGGG	3 cut(s)	1028, 1124, 1975
BmsI	GCATC	4 cut(s)	883, 1782, 2357, 2995
BmuI	ACTGGG	3 cut(s)	1028, 1124, 1975
BoxI	GACNNNNGTC	1 cut(s)	1751
BpiI	GAAGAC	2 cut(s)	1640, 1968
BplI	GAGNNNNNCTC	2 cut(s)	2363, 2395
BpmI	CTGGAG	2 cut(s)	601, 1323
Bpu10I	CCTNAGC	2 cut(s)	306, 2595
Bpu14I	TTCGAA	1 cut(s)	2719
BpuEI	CTTGAG	1 cut(s)	2260
BpuMI	CCSGG	2 cut(s)	2045, 2833
BsaAI	YACGTR	2 cut(s)	626, 2861
BsaBI	GATNNNNATC	1 cut(s)	2950
BsaHI	GRCGYC	1 cut(s)	335
BsaI	GGTCTC	1 cut(s)	2855
BsaJI	CCNNGG	6 cut(s)	339, 806, 951, 2352, 2706, 2899
BsaWI	WCCGGW	5 cut(s)	157, 250, 766, 782, 1398
BsaXI	ACNNNNNCTCC	6 cut(s)	251, 281, 1735, 1765, 2871, 2901
Bsc4I	CCNNNNNNNGG	6 cut(s)	1385, 1740, 2120, 2231, 2358, 2686
Bse1I	ACTGG	7 cut(s)	1023, 1130, 1177, 1779, 1785, 1970, 3091
Bse3DI	GCAATG	1 cut(s)	2346
Bse8I	GATNNNNATC	1 cut(s)	2950
BseAI	TCCGGA	1 cut(s)	250
BseBI	CCWGG	6 cut(s)	340, 807, 952, 1211, 2353, 2526
BseDI	CCNNGG	6 cut(s)	339, 806, 951, 2352, 2706, 2899
BseGI	GGATG	4 cut(s)	1797, 2348, 2701, 2849
BseJI	GATNNNNATC	1 cut(s)	2950
BseLI	CCNNNNNNNGG	6 cut(s)	1385, 1740, 2120, 2231, 2358, 2686
BseMI	GCAATG	1 cut(s)	2346
BseMII	CTCAG	3 cut(s)	297, 1047, 2586
BseNI	ACTGG	7 cut(s)	1023, 1130, 1177, 1779, 1785, 1970, 3091
BseSI	GKGCMC	2 cut(s)	227, 1478
BseX3I	CGGCCG	1 cut(s)	317
BseXI	GCAGC	5 cut(s)	178, 908, 1130, 1578, 1782
BseYI	CCCAGC	2 cut(s)	452, 1121
BsgI	GTGCAG	1 cut(s)	744
Bsh1236I	CGCG	1 cut(s)	316
Bsh1285I	CGRYCG	1 cut(s)	320
BshFI	GGCC	3 cut(s)	319, 829, 2524
BshNI	GGYRCC	2 cut(s)	2361, 2616
BsiEI	CGRYCG	1 cut(s)	320
BsiHKAI	GWGCWC	4 cut(s)	83, 227, 242, 2324
BsiHKCI	CYCGRG	1 cut(s)	82
BsiSI	CCGG	8 cut(s)	158, 251, 767, 783, 863, 1399, 2044, 2832
BslFI	GGGAC	4 cut(s)	357, 1696, 1982, 2703
BslI	CCNNNNNNNGG	6 cut(s)	1385, 1740, 2120, 2231, 2358, 2686
BsmAI	GTCTC	2 cut(s)	2144, 2855
BsmFI	GGGAC	4 cut(s)	357, 1696, 1982, 2703
BsmI	GAATGC	2 cut(s)	1278, 2027
BsnI	GGCC	3 cut(s)	319, 829, 2524
Bso31I	GGTCTC	1 cut(s)	2855
BsoBI	CYCGRG	1 cut(s)	82
Bsp119I	TTCGAA	1 cut(s)	2719
Bsp1286I	GDGCHC	7 cut(s)	83, 227, 242, 822, 1478, 2324, 2443
Bsp13I	TCCGGA	1 cut(s)	250
BspANI	GGCC	3 cut(s)	319, 829, 2524
BspCNI	CTCAG	3 cut(s)	298, 1048, 2587
BspEI	TCCGGA	1 cut(s)	250
BspFNI	CGCG	1 cut(s)	316
BspHI	TCATGA	2 cut(s)	1183, 1813
BspMAI	CTGCAG	1 cut(s)	1800
BspMI	ACCTGC	1 cut(s)	2307
BspPI	GGATC	5 cut(s)	839, 973, 1083, 1272, 2823
BspT104I	TTCGAA	1 cut(s)	2719
BspT107I	GGYRCC	2 cut(s)	2361, 2616
BspTNI	GGTCTC	1 cut(s)	2855
BsrBI	CCGCTC	1 cut(s)	121
BsrDI	GCAATG	1 cut(s)	2346
BsrI	ACTGG	7 cut(s)	1023, 1130, 1177, 1779, 1785, 1970, 3091
BssECI	CCNNGG	6 cut(s)	339, 806, 951, 2352, 2706, 2899
BssNI	GRCGYC	1 cut(s)	335
BssT1I	CCWWGG	1 cut(s)	2706
Bst2UI	CCWGG	6 cut(s)	340, 807, 952, 1211, 2353, 2526
Bst4CI	ACNGT	9 cut(s)	48, 1385, 1609, 1622, 1679, 2458, 2578, 2900, 2969
Bst6I	CTCTTC	6 cut(s)	89, 531, 549, 2513, 2559, 2645
BstACI	GRCGYC	1 cut(s)	335
BstAPI	GCANNNNNTGC	2 cut(s)	1879, 2345
BstBAI	YACGTR	2 cut(s)	626, 2861
BstBI	TTCGAA	1 cut(s)	2719
BstC8I	GCNNGC	8 cut(s)	176, 242, 831, 883, 1031, 1428, 1695, 2226
BstDEI	CTNAG	7 cut(s)	306, 1056, 1151, 1268, 1332, 1700, 2595
BstDSI	CCRYGG	1 cut(s)	2899
BstENI	CCTNNNNNAGG	1 cut(s)	2118
BstF5I	GGATG	4 cut(s)	1797, 2348, 2701, 2849
BstFNI	CGCG	1 cut(s)	316
BstH2I	RGCGCY	2 cut(s)	863, 1700
BstHHI	GCGC	4 cut(s)	862, 1699, 2177, 2429
BstMAI	GTCTC	2 cut(s)	2144, 2855
BstMCI	CGRYCG	1 cut(s)	320
BstMWI	GCNNNNNNNGC	9 cut(s)	127, 171, 322, 627, 826, 1497, 1879, 2345, 2354
BstNI	CCWGG	6 cut(s)	340, 807, 952, 1211, 2353, 2526
BstNSI	RCATGY	5 cut(s)	1349, 1430, 2042, 2076, 2175
BstPAI	GACNNNNGTC	1 cut(s)	1751
BstSCI	CCNGG	8 cut(s)	338, 805, 950, 1209, 2043, 2351, 2524, 2831
BstSFI	CTRYAG	1 cut(s)	1796
BstSLI	GKGCMC	2 cut(s)	227, 1478
BstUI	CGCG	1 cut(s)	316
BstV1I	GCAGC	5 cut(s)	178, 908, 1130, 1578, 1782
BstV2I	GAAGAC	2 cut(s)	1640, 1968
BstX2I	RGATCY	3 cut(s)	1264, 1562, 2828
BstXI	CCANNNNNNTGG	1 cut(s)	473
BstYI	RGATCY	3 cut(s)	1264, 1562, 2828
BstZI	CGGCCG	1 cut(s)	317
BsuI	GTATCC	1 cut(s)	2829
BsuRI	GGCC	3 cut(s)	319, 829, 2524
BtgI	CCRYGG	1 cut(s)	2899
BtgZI	GCGATG	1 cut(s)	1951
BtrI	CACGTC	1 cut(s)	347
BtsCI	GGATG	4 cut(s)	1797, 2348, 2701, 2849
BtsI	GCAGTG	1 cut(s)	732
BtsIMutI	CAGTG	7 cut(s)	225, 648, 732, 1137, 1390, 1476, 1778
BveI	ACCTGC	1 cut(s)	2307
Cac8I	GCNNGC	8 cut(s)	176, 242, 831, 883, 1031, 1428, 1695, 2226
CaiI	CAGNNNCTG	2 cut(s)	358, 1532
CciI	TCATGA	2 cut(s)	1183, 1813
CciNI	GCGGCCGC	1 cut(s)	317
CfoI	GCGC	4 cut(s)	862, 1699, 2177, 2429
Cfr13I	GGNCC	4 cut(s)	764, 1207, 1396, 2887
CseI	GACGC	1 cut(s)	1244
Csp6I	GTAC	6 cut(s)	112, 356, 887, 1148, 1675, 2362
CviQI	GTAC	6 cut(s)	112, 356, 887, 1148, 1675, 2362
DdeI	CTNAG	7 cut(s)	306, 1056, 1151, 1268, 1332, 1700, 2595
DraI	TTTAAA	2 cut(s)	2133, 2629
DraIII	CACNNNGTG	1 cut(s)	2683
DrdI	GACNNNNNNGTC	1 cut(s)	1241
DseDI	GACNNNNNNGTC	1 cut(s)	1241
EaeI	YGGCCR	1 cut(s)	317
EagI	CGGCCG	1 cut(s)	317
Eam1104I	CTCTTC	6 cut(s)	89, 531, 549, 2513, 2559, 2645
EarI	CTCTTC	6 cut(s)	89, 531, 549, 2513, 2559, 2645
EciI	GGCGGA	2 cut(s)	212, 278
Ecl136II	GAGCTC	1 cut(s)	81
EclXI	CGGCCG	1 cut(s)	317
Eco130I	CCWWGG	1 cut(s)	2706
Eco147I	AGGCCT	1 cut(s)	2524
Eco24I	GRGCYC	3 cut(s)	83, 822, 2443
Eco31I	GGTCTC	1 cut(s)	2855
Eco47I	GGWCC	4 cut(s)	764, 1207, 1396, 2887
Eco47III	AGCGCT	1 cut(s)	1698
Eco52I	CGGCCG	1 cut(s)	317
Eco53kI	GAGCTC	1 cut(s)	81
Eco57I	CTGAAG	5 cut(s)	151, 249, 624, 2106, 2211
Eco88I	CYCGRG	1 cut(s)	82
EcoICRI	GAGCTC	1 cut(s)	81
EcoNI	CCTNNNNNAGG	1 cut(s)	2118
EcoRII	CCWGG	6 cut(s)	338, 805, 950, 1209, 2351, 2524
EcoT14I	CCWWGG	1 cut(s)	2706
EcoT38I	GRGCYC	3 cut(s)	83, 822, 2443
ErhI	CCWWGG	1 cut(s)	2706
FalI	AAGNNNNNCTT	8 cut(s)	440, 472, 806, 838, 1499, 1531, 3057, 3089
FaqI	GGGAC	4 cut(s)	357, 1696, 1982, 2703
FauI	CCCGC	2 cut(s)	126, 139
FauNDI	CATATG	2 cut(s)	1358, 1988
FbaI	TGATCA	1 cut(s)	3036
FokI	GGATG	4 cut(s)	1804, 2335, 2688, 2856
FriOI	GRGCYC	3 cut(s)	83, 822, 2443
FspBI	CTAG	5 cut(s)	414, 485, 1586, 1749, 2480
GlaI	GCGC	4 cut(s)	861, 1698, 2176, 2428
GsaI	CCCAGC	2 cut(s)	456, 1125
GsuI	CTGGAG	2 cut(s)	601, 1323
HaeII	RGCGCY	2 cut(s)	863, 1700
HaeIII	GGCC	3 cut(s)	319, 829, 2524
HapII	CCGG	8 cut(s)	158, 251, 767, 783, 863, 1399, 2044, 2832
HgaI	GACGC	1 cut(s)	1244
HhaI	GCGC	4 cut(s)	862, 1699, 2177, 2429
Hin1I	GRCGYC	1 cut(s)	335
Hin6I	GCGC	4 cut(s)	860, 1697, 2175, 2427
HinP1I	GCGC	4 cut(s)	860, 1697, 2175, 2427
HincII	GTYRAC	1 cut(s)	1338
HindII	GTYRAC	1 cut(s)	1338
HinfI	GANTC	9 cut(s)	37, 62, 266, 377, 1142, 1242, 1372, 1529, 2473
HpaI	GTTAAC	1 cut(s)	1338
HpaII	CCGG	8 cut(s)	158, 251, 767, 783, 863, 1399, 2044, 2832
HphI	GGTGA	7 cut(s)	71, 172, 340, 437, 797, 2915, 2923
Hpy166II	GTNNAC	6 cut(s)	225, 1086, 1207, 1338, 1926, 2906
Hpy8I	GTNNAC	6 cut(s)	225, 1086, 1207, 1338, 1926, 2906
HpyCH4III	ACNGT	9 cut(s)	48, 1385, 1609, 1622, 1679, 2458, 2578, 2900, 2969
HpyCH4IV	ACGT	4 cut(s)	335, 346, 625, 2860
HpyF10VI	GCNNNNNNNGC	9 cut(s)	127, 171, 322, 627, 826, 1497, 1879, 2345, 2354
HpyF3I	CTNAG	7 cut(s)	306, 1056, 1151, 1268, 1332, 1700, 2595
HpySE526I	ACGT	4 cut(s)	335, 346, 625, 2860
Hsp92I	GRCGYC	1 cut(s)	335
HspAI	GCGC	4 cut(s)	860, 1697, 2175, 2427
Kpn2I	TCCGGA	1 cut(s)	250
KpnI	GGTACC	1 cut(s)	2365
Ksp22I	TGATCA	1 cut(s)	3036
KspAI	GTTAAC	1 cut(s)	1338
LmnI	GCTCC	9 cut(s)	817, 865, 1540, 1711, 1772, 2030, 2221, 2327, 2446
Lsp1109I	GCAGC	5 cut(s)	178, 908, 1130, 1578, 1782
LweI	GCATC	4 cut(s)	883, 1782, 2357, 2995
MaeI	CTAG	5 cut(s)	414, 485, 1586, 1749, 2480
MaeII	ACGT	4 cut(s)	335, 346, 625, 2860
MaeIII	GTNAC	3 cut(s)	917, 1603, 1616
MbiI	CCGCTC	1 cut(s)	121
MflI	RGATCY	3 cut(s)	1264, 1562, 2828
MhlI	GDGCHC	7 cut(s)	83, 227, 242, 822, 1478, 2324, 2443
MlyI	GAGTC	5 cut(s)	46, 275, 371, 1251, 2467
MmeI	TCCRAC	2 cut(s)	2541, 2597
MroI	TCCGGA	1 cut(s)	250
MroXI	GAANNNNTTC	3 cut(s)	2568, 2715, 2732
MslI	CAYNNNNRTG	4 cut(s)	230, 641, 1350, 1818
MspA1I	CMGCKG	2 cut(s)	325, 1121
MspI	CCGG	8 cut(s)	158, 251, 767, 783, 863, 1399, 2044, 2832
MspR9I	CCNGG	8 cut(s)	340, 807, 952, 1211, 2045, 2353, 2526, 2833
Mva1269I	GAATGC	2 cut(s)	1278, 2027
MvaI	CCWGG	6 cut(s)	340, 807, 952, 1211, 2353, 2526
MvnI	CGCG	1 cut(s)	316
MwoI	GCNNNNNNNGC	9 cut(s)	127, 171, 322, 627, 826, 1497, 1879, 2345, 2354
NciI	CCSGG	2 cut(s)	2045, 2833
NdeI	CATATG	2 cut(s)	1358, 1988
NmeAIII	GCCGAG	2 cut(s)	60, 111
NotI	GCGGCCGC	1 cut(s)	317
NspI	RCATGY	5 cut(s)	1349, 1430, 2042, 2076, 2175
NspV	TTCGAA	1 cut(s)	2719
OliI	CACNNNNGTG	2 cut(s)	230, 641
PaeI	GCATGC	1 cut(s)	1430
PagI	TCATGA	2 cut(s)	1183, 1813
PaqCI	CACCTGC	1 cut(s)	2307
PceI	AGGCCT	1 cut(s)	2524
PciI	ACATGT	2 cut(s)	1345, 2038
PcsI	WCGNNNNNNNCGW	1 cut(s)	32
PctI	GAATGC	2 cut(s)	1278, 2027
PdmI	GAANNNNTTC	3 cut(s)	2568, 2715, 2732
PfeI	GAWTC	4 cut(s)	62, 1142, 1372, 1529
PflMI	CCANNNNNTGG	2 cut(s)	1740, 2686
PfoI	TCCNGGA	2 cut(s)	2043, 2831
PleI	GAGTC	5 cut(s)	45, 274, 371, 1250, 2467
PpsI	GAGTC	5 cut(s)	45, 274, 371, 1250, 2467
Ppu21I	YACGTR	2 cut(s)	626, 2861
PscI	ACATGT	2 cut(s)	1345, 2038
PshAI	GACNNNNGTC	1 cut(s)	1751
PsiI	TTATAA	2 cut(s)	597, 1461
Psp124BI	GAGCTC	1 cut(s)	83
Psp6I	CCWGG	6 cut(s)	338, 805, 950, 1209, 2351, 2524
PspFI	CCCAGC	2 cut(s)	452, 1121
PspGI	CCWGG	6 cut(s)	338, 805, 950, 1209, 2351, 2524
PspPI	GGNCC	4 cut(s)	764, 1207, 1396, 2887
PstI	CTGCAG	1 cut(s)	1800
PstNI	CAGNNNCTG	2 cut(s)	358, 1532
PsuI	RGATCY	3 cut(s)	1264, 1562, 2828
PvuII	CAGCTG	1 cut(s)	1121
RsaI	GTAC	6 cut(s)	113, 357, 888, 1149, 1676, 2363
RsaNI	GTAC	6 cut(s)	112, 356, 887, 1148, 1675, 2362
RseI	CAYNNNNRTG	4 cut(s)	230, 641, 1350, 1818
SacI	GAGCTC	1 cut(s)	83
Sau96I	GGNCC	4 cut(s)	764, 1207, 1396, 2887
SchI	GAGTC	5 cut(s)	46, 275, 371, 1251, 2467
ScrFI	CCNGG	8 cut(s)	340, 807, 952, 1211, 2045, 2353, 2526, 2833
SduI	GDGCHC	7 cut(s)	83, 227, 242, 822, 1478, 2324, 2443
SfaNI	GCATC	4 cut(s)	883, 1782, 2357, 2995
SfcI	CTRYAG	1 cut(s)	1796
SfuI	TTCGAA	1 cut(s)	2719
SinI	GGWCC	4 cut(s)	764, 1207, 1396, 2887
SmiMI	CAYNNNNRTG	4 cut(s)	230, 641, 1350, 1818
SmlI	CTYRAG	1 cut(s)	2239
SmoI	CTYRAG	1 cut(s)	2239
SpeI	ACTAGT	3 cut(s)	413, 1585, 1748
SphI	GCATGC	1 cut(s)	1430
SseBI	AGGCCT	1 cut(s)	2524
SspI	AATATT	1 cut(s)	2625
SspMI	CTAG	5 cut(s)	414, 485, 1586, 1749, 2480
SstI	GAGCTC	1 cut(s)	83
StuI	AGGCCT	1 cut(s)	2524
StyD4I	CCNGG	8 cut(s)	338, 805, 950, 1209, 2043, 2351, 2524, 2831
StyI	CCWWGG	1 cut(s)	2706
TaaI	ACNGT	9 cut(s)	48, 1385, 1609, 1622, 1679, 2458, 2578, 2900, 2969
TaiI	ACGT	4 cut(s)	338, 349, 628, 2863
TaqI	TCGA	6 cut(s)	269, 275, 506, 1003, 1191, 2719
TauI	GCSGC	5 cut(s)	146, 197, 319, 322, 325
TfiI	GAWTC	4 cut(s)	62, 1142, 1372, 1529
TscAI	CASTG	7 cut(s)	232, 648, 732, 1137, 1390, 1483, 1785
TseI	GCWGC	5 cut(s)	191, 896, 1118, 1591, 1795
TspGWI	ACGGA	2 cut(s)	1135, 1882
TspRI	CASTG	7 cut(s)	232, 648, 732, 1137, 1390, 1483, 1785
Van91I	CCANNNNNTGG	2 cut(s)	1740, 2686
VneI	GTGCAC	1 cut(s)	223
VpaK11BI	GGWCC	4 cut(s)	764, 1207, 1396, 2887
XagI	CCTNNNNNAGG	1 cut(s)	2118
XapI	RAATTY	6 cut(s)	16, 53, 1465, 2254, 2289, 2732
XceI	RCATGY	5 cut(s)	1349, 1430, 2042, 2076, 2175
XmnI	GAANNNNTTC	3 cut(s)	2568, 2715, 2732
XspI	CTAG	5 cut(s)	414, 485, 1586, 1749, 2480
ZraI	GACGTC	1 cut(s)	336

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.