Rh1BG404800
ERF Family

Belongs to the class V-like SAM-binding methyltransferase superfamily. Histone-lysine methyltransferase family. TRX MLL subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0011056
Physical Location & Seq
Forward (+)
52760732 .. 52768486
7755 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG404800.1

Sequence Viewer

Length: 2982 bp
ATGATAATCAAGAAGAATTTGAAATCGCAAATGCCGAGTCTGAAACGGTGCAAATTCGGTGATTCGGAGGAGGACGAGAGCTCGGGGAGGAAGAAGAGGAGGACTAATGGGTACTACCCGCTCAATTTGCTCGGCGAGGTGGCGGCGGGGATTATTCCGGTGAGCTTCAGGGGCTTGCTTGGGTCGGTTGCTGCGGCGGAGAAGGGAGGAGGGTTTTCGTGGTGCACTGAAGTGTCGTGCTCGCCACCTCCGGAGGAGGAGGCGGAGTCGAAATCGAAGGTATGCAAATCCGCAAAAGGAAAGGCTGAGGTTTCGCGGCCGCCGCTGGTGAGGACGTCCAGGGGACGTGTTCAGGTACTGCCTTCTCGGTTTAATGACTCGGTTATTGAGAATTGGAAGAAAGAGAGTAAGACTAGTTTGCGTGGTGATGGTAATGTTGAAGATGAGAAGCCCAGCTTGAAACCCCAGAAAAATGGAAAGAAGCTAGGGAATAATGTGTATGGCTCGAAGAAGTATTCGGGTTTGTGTGAGGAAGAAGAGGAGGAGGAGGAAGAAGAGGAGGAAGATGAAGATGGGTATGTGCCGTTTAAGAGTTATAACATGAGGAAGTATAACTCCAGCTCACGTAGCACACTCACTTCAGTGCATGAGCATTTGGTTGAAGATGACAAGTGTGCGGTTGTGGAGATTGTTGAAGAAGAAGAAGAAGATGATTTAGAGGGTGCAGTGAGGATTTCAAATCAGAGGACAGATGGGTTGTATGGACCGGAGGACTTTTATTCCGGTGATATAGTGTGGGCAAAGCCAGGGAAAAAGGAGCCCTTTTGGCCTGCCATTGTTATTGATCCAATGACACAAGCGCCGGAGCTGGTTTTGAGGGCTTGCGTACCTGATGCAGCTTGTGTCATGTTTTTCGGTTACTCTGGGAATGAGAACCAAAGGGATTATGCCTGGGTTAAAAGGGGATCACTTTTTCCATTTATGGATTATATAGACAGGTTTCGAGAGCAGTCTGAACTGGGCAACTGCAAGCCCTGTGATTTCCAGATGGCAACTGAGGAGGCATTTTTGGTGGATCAAGGGTTTACCGAGAAGTTGATAGCAGATATAAACATGGCAGCTGGGAACCCAGTGTATGATGAATCCGTACTTAGAGGAGTTCAAGAGGCTACTGGTTCAAATCATGATCTCGACTATCAGTTTGTGGACCAGGACATCTATCGGAAGAAGAAAGACGCAAGAGTCTGTGAAGGCTGTGGCTCGGATCTTAGAATGCCAAAGAAAATGAAGGTTTCAACTTCTGGAGGGCAATTCCTTTGTAAATCATGTGCTAAGTTAACAAAACATGTTTGTGGCATATGCAAGAAGTGGAATCAGCCTGACAGTGGAACTTGGGTCCGGTGTGATGGTTGCAGAGTATGGGTGCATGCAGAATGTGATAGAATTAACACCAATTATTATAAGAATTTGGGGGGCACTGATTATTTCTGCCCTCCTTGCAAAGTAAAGTTTAACTTTGAATTGTCAGATTCTGAAAAGGAGCAACCAAAAGTCAAGTGTAGATCTACTAAAAATGAGGCACAACTAGTGCTGCCTAACAAGGTTACTGTTCTCTGTAACGGTGTGGAAGGCATATATTTTCCAAGTCTTCACTCTGTTGTGTGCAAGTGTGGGTACTGTGGGACAGAAAAGCAAGCGCTTAGTGAATGGGAGCGACACACAGGTTCCAAGTCCAGAAATTGGAGGACTAGTGTCAGAGTTAAAGGCTCCTTACTGGCACTGGAACAATGGATGCTGCAGTTAGCAGAGTTTCATGAAAATGCTCTTGTGTCTGTTAAACCACCTAAACGACCTTCTATTAAAGAACGGAAGCAAAAATTGCTCACTTTTTTGCAAGAAAAGTATGAACCCGTTTATGCGAAGTGGACAACAGAGCGATGTGCTGTATGTAGATGGGTTGAAGACTGGGACTACAACAAAATCATCATATGCAACAGATGTCAAATAGCTGTTCATCAAGAATGCTATGGAGCAAGACATGTCCGGGATTTCACTTCATGGGTCTGCAAAGCATGTGAAACACCTGAAGTCAAGAGAGAATGTTGCCTCTGTCCTGTTAAAGGAGGTGCTTTAAAGCCAACTGATATTGAGACATTGTGGGTTCATATTACATGCGCTTGGTTCAGACCTGAAGTGTCGTTTGCAAGTGATGAGAAGATGGAGCCTGCTCTTGGTATCTTGAGTATTCCATCAAATTCTTTTGTCAAGATTTGTGTAATCTGTAAGCAAATTCATGGTTCATGCACACAATGTAGCAGGTGCTCCACTTATTACCATGCAATGTGTGCATCCAGGGCAGGGTACCGCATGGAGTTGCACTCTTTAGAGAAAAATGGGAAACAGATTACAAAAATGGTTTCCTATTGCGCTTATCACAGGGCTCCAAATCCAGATACGGTCTTAATTATACAGACTCCTCTAGGAGTGTTTTCAGCCAAAAGCCTTCTCCAAAGTAAGAAGAGGCCTGGTTCAAGGCTAATTTCATCTAATAGAATTAAGTTGGAAGAGGTTCCAACTGTTGAAACGACTGAACCTGAGCCATTATCTTCTGCAAGGTGCCGAATATTTAAAAGATTGAAAGATAGTAGGAAGAGAACAGAAGAAGAAGCTGTTGCCCACCAAGTGATGGGACATTCCCATCATCCCTTGGAAGCAATTCGAAGTTTGAACAAATTCAGAGTAGTAGAGGAACCTCTAACTTTTTCATCTTTTAGAGAACGGCTTTACCATTTACAGAGAACCGAAAAAGATCGTGTTTGCTTTGGTAGATCCGGGATACATGGATGGGGTCTCTTTGCACGTAGAAACATTCAAGAAGGAGAAATGGTCCTTGAATACCGTGGTGAACAGGTGAGGCGTAGTATTGCAGATTTGAGGGAGGCACGATATAGATCAGAAGGCAAAGACTGTTATGTGAGTTGA

Protein Analysis

993

Amino Acids

112.92

Weight (kDa)

8.35

Isoelectric Point (pI)

50.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PWWP PF00855 262 - 355 1.4e-13 PWWP domain
PHD PF00628 451 - 500 1.9e-07 PHD-finger
PHD_2 PF13831 659 - 693 2.8e-11 PHD-finger
zf-HC5HC2H_2 PF13832 700 - 812 8.9e-28 PHD-zinc-finger like domain
zf-HC5HC2H PF13771 722 - 813 2.8e-13 PHD-like zinc-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0011056)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G27910 AT5G53430
fragaria_vesca FvH4_7g31710 FvH4_7g31710
malus_domestica MD01G1220300.v1.1 MD07G1289800.v1.1
prunus_persica Prupe.2G311000_v2.0.a1
pyrus_communis pycom01g22990 pycom07g26250
rosa_chinensis RchiOBHm_Chr1g0380901
rosa_laevigata RLG00000026264
rosa_multiflora Rmu_sc0002962.1_g000020
rosa_roxburghii Rroxscaffold_4G00278980
rosa_rugosa Rorug01G0425200 Rorug01G0425300
rosa_samantha Rh1AG449100 Rh1BG404800 Rh1CG418800 Rh1DG435200
rosa_wichuraiana Rw1G039150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 597, 1461
AarI CACCTGC 1 cut(s) 2307
AasI GACNNNNNNGTC 1 cut(s) 1241
AatII GACGTC 1 cut(s) 338
Acc36I ACCTGC 1 cut(s) 2307
Acc65I GGTACC 1 cut(s) 2361
AccB1I GGYRCC 2 cut(s) 2361, 2616
AccB7I CCANNNNNTGG 2 cut(s) 1740, 2686
AccBSI CCGCTC 1 cut(s) 121
AccII CGCG 1 cut(s) 316
AccIII TCCGGA 1 cut(s) 250
AclWI GGATC 5 cut(s) 839, 973, 1083, 1272, 2823
AcoI YGGCCR 1 cut(s) 317
AcsI RAATTY 6 cut(s) 16, 53, 1465, 2254, 2289, 2732
AcuI CTGAAG 5 cut(s) 151, 249, 624, 2106, 2211
AcyI GRCGYC 1 cut(s) 335
AdeI CACNNNGTG 1 cut(s) 2683
AfaI GTAC 6 cut(s) 113, 357, 888, 1149, 1676, 2363
AfeI AGCGCT 1 cut(s) 1698
AfiI CCNNNNNNNGG 6 cut(s) 1385, 1740, 2120, 2231, 2358, 2686
AflIII ACRYGT 3 cut(s) 346, 1345, 2038
AhlI ACTAGT 3 cut(s) 413, 1585, 1748
AjiI CACGTC 1 cut(s) 347
AjnI CCWGG 6 cut(s) 338, 805, 950, 1209, 2351, 2524
AleI CACNNNNGTG 2 cut(s) 230, 641
Alw21I GWGCWC 4 cut(s) 83, 227, 242, 2324
Alw26I GTCTC 2 cut(s) 2144, 2855
Alw44I GTGCAC 1 cut(s) 223
AlwI GGATC 5 cut(s) 839, 973, 1083, 1272, 2823
AlwNI CAGNNNCTG 2 cut(s) 358, 1532
Ama87I CYCGRG 1 cut(s) 82
Aor13HI TCCGGA 1 cut(s) 250
Aor51HI AGCGCT 1 cut(s) 1698
AoxI GGCC 3 cut(s) 317, 827, 2522
ApaLI GTGCAC 1 cut(s) 223
ApeKI GCWGC 5 cut(s) 191, 896, 1118, 1591, 1795
ApoI RAATTY 6 cut(s) 16, 53, 1465, 2254, 2289, 2732
ArsI GACNNNNNNTTYG 4 cut(s) 22, 54, 1184, 1216
Asp700I GAANNNNTTC 3 cut(s) 2568, 2715, 2732
Asp718I GGTACC 1 cut(s) 2361
AspLEI GCGC 4 cut(s) 862, 1699, 2177, 2429
AspS9I GGNCC 4 cut(s) 764, 1207, 1396, 2887
AsuC2I CCSGG 2 cut(s) 2045, 2833
AsuHPI GGTGA 7 cut(s) 71, 172, 340, 437, 797, 2915, 2923
AsuII TTCGAA 1 cut(s) 2719
AvaI CYCGRG 1 cut(s) 82
AvaII GGWCC 4 cut(s) 764, 1207, 1396, 2887
BaeGI GKGCMC 2 cut(s) 227, 1478
BanI GGYRCC 2 cut(s) 2361, 2616
BanII GRGCYC 3 cut(s) 83, 822, 2443
BbsI GAAGAC 2 cut(s) 1640, 1968
Bbv12I GWGCWC 4 cut(s) 83, 227, 242, 2324
BbvCI CCTCAGC 1 cut(s) 306
BbvI GCAGC 5 cut(s) 178, 908, 1130, 1578, 1782
BceAI ACGGC 2 cut(s) 568, 2795
BciT130I CCWGG 6 cut(s) 340, 807, 952, 1211, 2353, 2526
BciVI GTATCC 1 cut(s) 2829
BcnI CCSGG 2 cut(s) 2045, 2833
BcoDI GTCTC 2 cut(s) 2144, 2855
BcuI ACTAGT 3 cut(s) 413, 1585, 1748
BfaI CTAG 5 cut(s) 414, 485, 1586, 1749, 2480
BfmI CTRYAG 1 cut(s) 1796
BfoI RGCGCY 2 cut(s) 863, 1700
BfuAI ACCTGC 1 cut(s) 2307
BfuI GTATCC 1 cut(s) 2829
BglI GCCNNNNNGGC 1 cut(s) 826
BglII AGATCT 1 cut(s) 1562
Bme1390I CCNGG 8 cut(s) 340, 807, 952, 1211, 2045, 2353, 2526, 2833
Bme18I GGWCC 4 cut(s) 764, 1207, 1396, 2887
BmeT110I CYCGRG 1 cut(s) 82
BmgBI CACGTC 1 cut(s) 347
BmgT120I GGNCC 4 cut(s) 764, 1207, 1396, 2887
BmrFI CCNGG 8 cut(s) 340, 807, 952, 1211, 2045, 2353, 2526, 2833
BmrI ACTGGG 3 cut(s) 1028, 1124, 1975
BmsI GCATC 3 cut(s) 883, 1782, 2357
BmuI ACTGGG 3 cut(s) 1028, 1124, 1975
BoxI GACNNNNGTC 1 cut(s) 1751
BpiI GAAGAC 2 cut(s) 1640, 1968
BplI GAGNNNNNCTC 2 cut(s) 2363, 2395
BpmI CTGGAG 2 cut(s) 601, 1323
Bpu10I CCTNAGC 2 cut(s) 306, 2595
Bpu14I TTCGAA 1 cut(s) 2719
BpuEI CTTGAG 1 cut(s) 2260
BpuMI CCSGG 2 cut(s) 2045, 2833
BsaAI YACGTR 2 cut(s) 626, 2861
BsaBI GATNNNNATC 1 cut(s) 2950
BsaHI GRCGYC 1 cut(s) 335
BsaI GGTCTC 1 cut(s) 2855
BsaJI CCNNGG 6 cut(s) 339, 806, 951, 2352, 2706, 2899
BsaWI WCCGGW 5 cut(s) 157, 250, 766, 782, 1398
BsaXI ACNNNNNCTCC 6 cut(s) 251, 281, 1735, 1765, 2871, 2901
Bsc4I CCNNNNNNNGG 6 cut(s) 1385, 1740, 2120, 2231, 2358, 2686
Bse1I ACTGG 6 cut(s) 1023, 1130, 1177, 1779, 1785, 1970
Bse3DI GCAATG 1 cut(s) 2346
Bse8I GATNNNNATC 1 cut(s) 2950
BseAI TCCGGA 1 cut(s) 250
BseBI CCWGG 6 cut(s) 340, 807, 952, 1211, 2353, 2526
BseDI CCNNGG 6 cut(s) 339, 806, 951, 2352, 2706, 2899
BseGI GGATG 4 cut(s) 1797, 2348, 2701, 2849
BseJI GATNNNNATC 1 cut(s) 2950
BseLI CCNNNNNNNGG 6 cut(s) 1385, 1740, 2120, 2231, 2358, 2686
BseMI GCAATG 1 cut(s) 2346
BseMII CTCAG 3 cut(s) 297, 1047, 2586
BseNI ACTGG 6 cut(s) 1023, 1130, 1177, 1779, 1785, 1970
BseSI GKGCMC 2 cut(s) 227, 1478
BseX3I CGGCCG 1 cut(s) 317
BseXI GCAGC 5 cut(s) 178, 908, 1130, 1578, 1782
BseYI CCCAGC 2 cut(s) 452, 1121
BsgI GTGCAG 1 cut(s) 744
Bsh1236I CGCG 1 cut(s) 316
Bsh1285I CGRYCG 1 cut(s) 320
BshFI GGCC 3 cut(s) 319, 829, 2524
BshNI GGYRCC 2 cut(s) 2361, 2616
BsiEI CGRYCG 1 cut(s) 320
BsiHKAI GWGCWC 4 cut(s) 83, 227, 242, 2324
BsiHKCI CYCGRG 1 cut(s) 82
BsiSI CCGG 8 cut(s) 158, 251, 767, 783, 863, 1399, 2044, 2832
BslFI GGGAC 4 cut(s) 357, 1696, 1982, 2703
BslI CCNNNNNNNGG 6 cut(s) 1385, 1740, 2120, 2231, 2358, 2686
BsmAI GTCTC 2 cut(s) 2144, 2855
BsmFI GGGAC 4 cut(s) 357, 1696, 1982, 2703
BsmI GAATGC 2 cut(s) 1278, 2027
BsnI GGCC 3 cut(s) 319, 829, 2524
Bso31I GGTCTC 1 cut(s) 2855
BsoBI CYCGRG 1 cut(s) 82
Bsp119I TTCGAA 1 cut(s) 2719
Bsp1286I GDGCHC 7 cut(s) 83, 227, 242, 822, 1478, 2324, 2443
Bsp13I TCCGGA 1 cut(s) 250
Bsp143I GATC 9 cut(s) 844, 965, 1075, 1186, 1264, 1562, 2809, 2828, 2951
BspANI GGCC 3 cut(s) 319, 829, 2524
BspCNI CTCAG 3 cut(s) 298, 1048, 2587
BspEI TCCGGA 1 cut(s) 250
BspFNI CGCG 1 cut(s) 316
BspHI TCATGA 2 cut(s) 1183, 1813
BspMAI CTGCAG 1 cut(s) 1800
BspMI ACCTGC 1 cut(s) 2307
BspPI GGATC 5 cut(s) 839, 973, 1083, 1272, 2823
BspT104I TTCGAA 1 cut(s) 2719
BspT107I GGYRCC 2 cut(s) 2361, 2616
BspTNI GGTCTC 1 cut(s) 2855
BsrBI CCGCTC 1 cut(s) 121
BsrDI GCAATG 1 cut(s) 2346
BsrI ACTGG 6 cut(s) 1023, 1130, 1177, 1779, 1785, 1970
BssECI CCNNGG 6 cut(s) 339, 806, 951, 2352, 2706, 2899
BssMI GATC 9 cut(s) 844, 965, 1075, 1186, 1264, 1562, 2809, 2828, 2951
BssNI GRCGYC 1 cut(s) 335
BssT1I CCWWGG 1 cut(s) 2706
Bst2UI CCWGG 6 cut(s) 340, 807, 952, 1211, 2353, 2526
Bst4CI ACNGT 9 cut(s) 48, 1385, 1609, 1622, 1679, 2458, 2578, 2900, 2969
Bst6I CTCTTC 6 cut(s) 89, 531, 549, 2513, 2559, 2645
BstACI GRCGYC 1 cut(s) 335
BstAPI GCANNNNNTGC 2 cut(s) 1879, 2345
BstBAI YACGTR 2 cut(s) 626, 2861
BstBI TTCGAA 1 cut(s) 2719
BstC8I GCNNGC 8 cut(s) 176, 242, 831, 883, 1031, 1428, 1695, 2226
BstDEI CTNAG 7 cut(s) 306, 1056, 1151, 1268, 1332, 1700, 2595
BstDSI CCRYGG 1 cut(s) 2899
BstENI CCTNNNNNAGG 1 cut(s) 2118
BstF5I GGATG 4 cut(s) 1797, 2348, 2701, 2849
BstFNI CGCG 1 cut(s) 316
BstH2I RGCGCY 2 cut(s) 863, 1700
BstHHI GCGC 4 cut(s) 862, 1699, 2177, 2429
BstKTI GATC 9 cut(s) 847, 968, 1078, 1189, 1267, 1565, 2812, 2831, 2954
BstMAI GTCTC 2 cut(s) 2144, 2855
BstMBI GATC 9 cut(s) 844, 965, 1075, 1186, 1264, 1562, 2809, 2828, 2951
BstMCI CGRYCG 1 cut(s) 320
BstMWI GCNNNNNNNGC 9 cut(s) 127, 171, 322, 627, 826, 1497, 1879, 2345, 2354
BstNI CCWGG 6 cut(s) 340, 807, 952, 1211, 2353, 2526
BstNSI RCATGY 5 cut(s) 1349, 1430, 2042, 2076, 2175
BstPAI GACNNNNGTC 1 cut(s) 1751
BstSCI CCNGG 8 cut(s) 338, 805, 950, 1209, 2043, 2351, 2524, 2831
BstSFI CTRYAG 1 cut(s) 1796
BstSLI GKGCMC 2 cut(s) 227, 1478
BstUI CGCG 1 cut(s) 316
BstV1I GCAGC 5 cut(s) 178, 908, 1130, 1578, 1782
BstV2I GAAGAC 2 cut(s) 1640, 1968
BstX2I RGATCY 3 cut(s) 1264, 1562, 2828
BstXI CCANNNNNNTGG 1 cut(s) 473
BstYI RGATCY 3 cut(s) 1264, 1562, 2828
BstZI CGGCCG 1 cut(s) 317
BsuI GTATCC 1 cut(s) 2829
BsuRI GGCC 3 cut(s) 319, 829, 2524
BtgI CCRYGG 1 cut(s) 2899
BtgZI GCGATG 1 cut(s) 1951
BtrI CACGTC 1 cut(s) 347
BtsCI GGATG 4 cut(s) 1797, 2348, 2701, 2849
BtsI GCAGTG 1 cut(s) 732
BtsIMutI CAGTG 7 cut(s) 225, 648, 732, 1137, 1390, 1476, 1778
BveI ACCTGC 1 cut(s) 2307
Cac8I GCNNGC 8 cut(s) 176, 242, 831, 883, 1031, 1428, 1695, 2226
CaiI CAGNNNCTG 2 cut(s) 358, 1532
CciI TCATGA 2 cut(s) 1183, 1813
CciNI GCGGCCGC 1 cut(s) 317
CfoI GCGC 4 cut(s) 862, 1699, 2177, 2429
Cfr13I GGNCC 4 cut(s) 764, 1207, 1396, 2887
CseI GACGC 1 cut(s) 1244
Csp6I GTAC 6 cut(s) 112, 356, 887, 1148, 1675, 2362
CviQI GTAC 6 cut(s) 112, 356, 887, 1148, 1675, 2362
DdeI CTNAG 7 cut(s) 306, 1056, 1151, 1268, 1332, 1700, 2595
DpnI GATC 9 cut(s) 846, 967, 1077, 1188, 1266, 1564, 2811, 2830, 2953
DpnII GATC 9 cut(s) 844, 965, 1075, 1186, 1264, 1562, 2809, 2828, 2951
DraI TTTAAA 2 cut(s) 2133, 2629
DraIII CACNNNGTG 1 cut(s) 2683
DrdI GACNNNNNNGTC 1 cut(s) 1241
DseDI GACNNNNNNGTC 1 cut(s) 1241
EaeI YGGCCR 1 cut(s) 317
EagI CGGCCG 1 cut(s) 317
Eam1104I CTCTTC 6 cut(s) 89, 531, 549, 2513, 2559, 2645
EarI CTCTTC 6 cut(s) 89, 531, 549, 2513, 2559, 2645
EciI GGCGGA 2 cut(s) 212, 278
Ecl136II GAGCTC 1 cut(s) 81
EclXI CGGCCG 1 cut(s) 317
Eco130I CCWWGG 1 cut(s) 2706
Eco147I AGGCCT 1 cut(s) 2524
Eco24I GRGCYC 3 cut(s) 83, 822, 2443
Eco31I GGTCTC 1 cut(s) 2855
Eco47I GGWCC 4 cut(s) 764, 1207, 1396, 2887
Eco47III AGCGCT 1 cut(s) 1698
Eco52I CGGCCG 1 cut(s) 317
Eco53kI GAGCTC 1 cut(s) 81
Eco57I CTGAAG 5 cut(s) 151, 249, 624, 2106, 2211
Eco88I CYCGRG 1 cut(s) 82
EcoICRI GAGCTC 1 cut(s) 81
EcoNI CCTNNNNNAGG 1 cut(s) 2118
EcoRII CCWGG 6 cut(s) 338, 805, 950, 1209, 2351, 2524
EcoT14I CCWWGG 1 cut(s) 2706
EcoT38I GRGCYC 3 cut(s) 83, 822, 2443
ErhI CCWWGG 1 cut(s) 2706
FalI AAGNNNNNCTT 6 cut(s) 440, 472, 806, 838, 1499, 1531
FaqI GGGAC 4 cut(s) 357, 1696, 1982, 2703
FauI CCCGC 2 cut(s) 126, 139
FauNDI CATATG 2 cut(s) 1358, 1988
FokI GGATG 4 cut(s) 1804, 2335, 2688, 2856
FriOI GRGCYC 3 cut(s) 83, 822, 2443
FspBI CTAG 5 cut(s) 414, 485, 1586, 1749, 2480
GlaI GCGC 4 cut(s) 861, 1698, 2176, 2428
GsaI CCCAGC 2 cut(s) 456, 1125
GsuI CTGGAG 2 cut(s) 601, 1323
HaeII RGCGCY 2 cut(s) 863, 1700
HaeIII GGCC 3 cut(s) 319, 829, 2524
HapII CCGG 8 cut(s) 158, 251, 767, 783, 863, 1399, 2044, 2832
HgaI GACGC 1 cut(s) 1244
HhaI GCGC 4 cut(s) 862, 1699, 2177, 2429
Hin1I GRCGYC 1 cut(s) 335
Hin6I GCGC 4 cut(s) 860, 1697, 2175, 2427
HinP1I GCGC 4 cut(s) 860, 1697, 2175, 2427
HincII GTYRAC 1 cut(s) 1338
HindII GTYRAC 1 cut(s) 1338
HinfI GANTC 9 cut(s) 37, 62, 266, 377, 1142, 1242, 1372, 1529, 2473
HpaI GTTAAC 1 cut(s) 1338
HpaII CCGG 8 cut(s) 158, 251, 767, 783, 863, 1399, 2044, 2832
HphI GGTGA 7 cut(s) 71, 172, 340, 437, 797, 2915, 2923
Hpy166II GTNNAC 6 cut(s) 225, 1086, 1207, 1338, 1926, 2906
Hpy8I GTNNAC 6 cut(s) 225, 1086, 1207, 1338, 1926, 2906
HpyCH4III ACNGT 9 cut(s) 48, 1385, 1609, 1622, 1679, 2458, 2578, 2900, 2969
HpyCH4IV ACGT 4 cut(s) 335, 346, 625, 2860
HpyF10VI GCNNNNNNNGC 9 cut(s) 127, 171, 322, 627, 826, 1497, 1879, 2345, 2354
HpyF3I CTNAG 7 cut(s) 306, 1056, 1151, 1268, 1332, 1700, 2595
HpySE526I ACGT 4 cut(s) 335, 346, 625, 2860
Hsp92I GRCGYC 1 cut(s) 335
HspAI GCGC 4 cut(s) 860, 1697, 2175, 2427
Kpn2I TCCGGA 1 cut(s) 250
KpnI GGTACC 1 cut(s) 2365
KspAI GTTAAC 1 cut(s) 1338
Kzo9I GATC 9 cut(s) 844, 965, 1075, 1186, 1264, 1562, 2809, 2828, 2951
LmnI GCTCC 9 cut(s) 817, 865, 1540, 1711, 1772, 2030, 2221, 2327, 2446
Lsp1109I GCAGC 5 cut(s) 178, 908, 1130, 1578, 1782
LweI GCATC 3 cut(s) 883, 1782, 2357
MaeI CTAG 5 cut(s) 414, 485, 1586, 1749, 2480
MaeII ACGT 4 cut(s) 335, 346, 625, 2860
MaeIII GTNAC 3 cut(s) 917, 1603, 1616
MalI GATC 9 cut(s) 846, 967, 1077, 1188, 1266, 1564, 2811, 2830, 2953
MbiI CCGCTC 1 cut(s) 121
MboI GATC 9 cut(s) 844, 965, 1075, 1186, 1264, 1562, 2809, 2828, 2951
MflI RGATCY 3 cut(s) 1264, 1562, 2828
MhlI GDGCHC 7 cut(s) 83, 227, 242, 822, 1478, 2324, 2443
MlyI GAGTC 5 cut(s) 46, 275, 371, 1251, 2467
MmeI TCCRAC 2 cut(s) 2541, 2597
MroI TCCGGA 1 cut(s) 250
MroXI GAANNNNTTC 3 cut(s) 2568, 2715, 2732
MslI CAYNNNNRTG 4 cut(s) 230, 641, 1350, 1818
MspA1I CMGCKG 2 cut(s) 325, 1121
MspI CCGG 8 cut(s) 158, 251, 767, 783, 863, 1399, 2044, 2832
MspR9I CCNGG 8 cut(s) 340, 807, 952, 1211, 2045, 2353, 2526, 2833
Mva1269I GAATGC 2 cut(s) 1278, 2027
MvaI CCWGG 6 cut(s) 340, 807, 952, 1211, 2353, 2526
MvnI CGCG 1 cut(s) 316
MwoI GCNNNNNNNGC 9 cut(s) 127, 171, 322, 627, 826, 1497, 1879, 2345, 2354
NciI CCSGG 2 cut(s) 2045, 2833
NdeI CATATG 2 cut(s) 1358, 1988
NdeII GATC 9 cut(s) 844, 965, 1075, 1186, 1264, 1562, 2809, 2828, 2951
NmeAIII GCCGAG 2 cut(s) 60, 111
NotI GCGGCCGC 1 cut(s) 317
NspI RCATGY 5 cut(s) 1349, 1430, 2042, 2076, 2175
NspV TTCGAA 1 cut(s) 2719
OliI CACNNNNGTG 2 cut(s) 230, 641
PaeI GCATGC 1 cut(s) 1430
PagI TCATGA 2 cut(s) 1183, 1813
PaqCI CACCTGC 1 cut(s) 2307
PceI AGGCCT 1 cut(s) 2524
PciI ACATGT 2 cut(s) 1345, 2038
PcsI WCGNNNNNNNCGW 1 cut(s) 32
PctI GAATGC 2 cut(s) 1278, 2027
PdmI GAANNNNTTC 3 cut(s) 2568, 2715, 2732
PfeI GAWTC 4 cut(s) 62, 1142, 1372, 1529
PflMI CCANNNNNTGG 2 cut(s) 1740, 2686
PfoI TCCNGGA 2 cut(s) 2043, 2831
PleI GAGTC 5 cut(s) 45, 274, 371, 1250, 2467
PpsI GAGTC 5 cut(s) 45, 274, 371, 1250, 2467
Ppu21I YACGTR 2 cut(s) 626, 2861
PscI ACATGT 2 cut(s) 1345, 2038
PshAI GACNNNNGTC 1 cut(s) 1751
PsiI TTATAA 2 cut(s) 597, 1461
Psp124BI GAGCTC 1 cut(s) 83
Psp6I CCWGG 6 cut(s) 338, 805, 950, 1209, 2351, 2524
PspFI CCCAGC 2 cut(s) 452, 1121
PspGI CCWGG 6 cut(s) 338, 805, 950, 1209, 2351, 2524
PspPI GGNCC 4 cut(s) 764, 1207, 1396, 2887
PstI CTGCAG 1 cut(s) 1800
PstNI CAGNNNCTG 2 cut(s) 358, 1532
PsuI RGATCY 3 cut(s) 1264, 1562, 2828
PvuII CAGCTG 1 cut(s) 1121
RsaI GTAC 6 cut(s) 113, 357, 888, 1149, 1676, 2363
RsaNI GTAC 6 cut(s) 112, 356, 887, 1148, 1675, 2362
RseI CAYNNNNRTG 4 cut(s) 230, 641, 1350, 1818
SacI GAGCTC 1 cut(s) 83
Sau3AI GATC 9 cut(s) 844, 965, 1075, 1186, 1264, 1562, 2809, 2828, 2951
Sau96I GGNCC 4 cut(s) 764, 1207, 1396, 2887
SchI GAGTC 5 cut(s) 46, 275, 371, 1251, 2467
ScrFI CCNGG 8 cut(s) 340, 807, 952, 1211, 2045, 2353, 2526, 2833
SduI GDGCHC 7 cut(s) 83, 227, 242, 822, 1478, 2324, 2443
SfaNI GCATC 3 cut(s) 883, 1782, 2357
SfcI CTRYAG 1 cut(s) 1796
SfuI TTCGAA 1 cut(s) 2719
SinI GGWCC 4 cut(s) 764, 1207, 1396, 2887
SmiMI CAYNNNNRTG 4 cut(s) 230, 641, 1350, 1818
SmlI CTYRAG 1 cut(s) 2239
SmoI CTYRAG 1 cut(s) 2239
SpeI ACTAGT 3 cut(s) 413, 1585, 1748
SphI GCATGC 1 cut(s) 1430
SseBI AGGCCT 1 cut(s) 2524
SspI AATATT 1 cut(s) 2625
SspMI CTAG 5 cut(s) 414, 485, 1586, 1749, 2480
SstI GAGCTC 1 cut(s) 83
StuI AGGCCT 1 cut(s) 2524
StyD4I CCNGG 8 cut(s) 338, 805, 950, 1209, 2043, 2351, 2524, 2831
StyI CCWWGG 1 cut(s) 2706
TaaI ACNGT 9 cut(s) 48, 1385, 1609, 1622, 1679, 2458, 2578, 2900, 2969
TaiI ACGT 4 cut(s) 338, 349, 628, 2863
TaqI TCGA 6 cut(s) 269, 275, 506, 1003, 1191, 2719
TauI GCSGC 5 cut(s) 146, 197, 319, 322, 325
TfiI GAWTC 4 cut(s) 62, 1142, 1372, 1529
TscAI CASTG 7 cut(s) 232, 648, 732, 1137, 1390, 1483, 1785
TseI GCWGC 5 cut(s) 191, 896, 1118, 1591, 1795
TspGWI ACGGA 2 cut(s) 1135, 1882
TspRI CASTG 7 cut(s) 232, 648, 732, 1137, 1390, 1483, 1785
Van91I CCANNNNNTGG 2 cut(s) 1740, 2686
VneI GTGCAC 1 cut(s) 223
VpaK11BI GGWCC 4 cut(s) 764, 1207, 1396, 2887
XagI CCTNNNNNAGG 1 cut(s) 2118
XapI RAATTY 6 cut(s) 16, 53, 1465, 2254, 2289, 2732
XceI RCATGY 5 cut(s) 1349, 1430, 2042, 2076, 2175
XmnI GAANNNNTTC 3 cut(s) 2568, 2715, 2732
XspI CTAG 5 cut(s) 414, 485, 1586, 1749, 2480
ZraI GACGTC 1 cut(s) 336
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.