Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0011056

Physical Location & Seq

Genomic Coordinates Reverse (-)

52601736 .. 52602274

Gene Structure 539 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0425200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

ATGATGTTAAGGCTCTCCCACGGCCATGGCATGAAGCCTAGAGAAGTTGCTGCCATGAGGGACTGCGTCGAACTGTTGAGTGACTCGGTGGACGAGCTTCAGAGGTCTATTTCCAAGATGGTTAACTTTAGGAGTTCTGGTTTTGAGCTTATGATAAGTGATGTACAAACTTGGGTTAGTGCTGCCTTGACGGATGAGGGCACCTGCTCGGATGGGTTTGCTGGAAATGGATTGAATGGGAATTTGAAGACTGTTGTGAGGGGTCGGATTGTGAACATTGCACAATTGACTAGCAATGCCTTGGCTTTGATCAAGAGATACGCCTCAGTTCATAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005911 GO:0008150 GO:0009292 GO:0009294 GO:0009506 GO:0009893 GO:0009987 GO:0010604 GO:0010638 GO:0019222 GO:0030054 GO:0031056 GO:0031058 GO:0031060 GO:0031062 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0032268 GO:0032270 GO:0033043 GO:0033044 GO:0044764 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051569 GO:0051571 GO:0051704 GO:0055044 GO:0060255 GO:0065007 GO:0080090 GO:1902275 GO:1905269 GO:2001252

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PHD PHD_2 PWWP SET zf-HC5HC2H_2

Protein Analysis

112

Amino Acids

12.18

Weight (kDa)

7.85

Isoelectric Point (pI)

19.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMEI	PF04043	11 - 103	2.6e-25	Plant invertase/pectin methylesterase inhibitor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011056)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27910 AT5G53430
fragaria_vesca	FvH4_7g31710 FvH4_7g31710
malus_domestica	MD01G1220300.v1.1 MD07G1289800.v1.1
prunus_persica	Prupe.2G311000_v2.0.a1
pyrus_communis	pycom01g22990 pycom07g26250
rosa_chinensis	RchiOBHm_Chr1g0380901
rosa_laevigata	RLG00000026264
rosa_multiflora	Rmu_sc0002962.1_g000020
rosa_roxburghii	Rroxscaffold_4G00278980
rosa_rugosa	Rorug01G0425200 Rorug01G0425300
rosa_samantha	Rh1AG449100 Rh1BG404800 Rh1CG418800 Rh1DG435200
rosa_wichuraiana	Rw1G039150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	212
Acc36I	ACCTGC	1 cut(s)	212
AccB1I	GGYRCC	1 cut(s)	200
AcoI	YGGCCR	1 cut(s)	22
AcsI	RAATTY	1 cut(s)	241
AcuI	CTGAAG	1 cut(s)	83
AfaI	GTAC	1 cut(s)	165
AgsI	TTSAA	2 cut(s)	235, 247
AluBI	AGCT	2 cut(s)	97, 148
AluI	AGCT	2 cut(s)	97, 148
AoxI	GGCC	1 cut(s)	22
ApeKI	GCWGC	2 cut(s)	50, 182
ApoI	RAATTY	1 cut(s)	241
BaeGI	GKGCMC	1 cut(s)	203
BanI	GGYRCC	1 cut(s)	200
BbsI	GAAGAC	1 cut(s)	254
BbvI	GCAGC	2 cut(s)	37, 169
BccI	CCATC	2 cut(s)	112, 206
BceAI	ACGGC	1 cut(s)	37
BclI	TGATCA	1 cut(s)	309
BfaI	CTAG	2 cut(s)	39, 291
BfuAI	ACCTGC	1 cut(s)	212
BisI	GCNGC	2 cut(s)	51, 183
BlsI	GCNGC	2 cut(s)	52, 184
BmiI	GGNNCC	1 cut(s)	202
BpiI	GAAGAC	1 cut(s)	254
BsaJI	CCNNGG	3 cut(s)	19, 25, 300
BsaXI	ACNNNNNCTCC	2 cut(s)	124, 154
Bse3DI	GCAATG	2 cut(s)	276, 301
BseDI	CCNNGG	3 cut(s)	19, 25, 300
BseGI	GGATG	2 cut(s)	199, 217
BseMI	GCAATG	2 cut(s)	276, 301
BseMII	CTCAG	1 cut(s)	339
BseSI	GKGCMC	1 cut(s)	203
BseXI	GCAGC	2 cut(s)	37, 169
BshFI	GGCC	1 cut(s)	24
BshNI	GGYRCC	1 cut(s)	200
BslFI	GGGAC	1 cut(s)	74
BsmFI	GGGAC	1 cut(s)	74
BsnI	GGCC	1 cut(s)	24
Bsp1286I	GDGCHC	1 cut(s)	203
Bsp1407I	TGTACA	1 cut(s)	163
Bsp143I	GATC	1 cut(s)	309
Bsp19I	CCATGG	1 cut(s)	25
BspANI	GGCC	1 cut(s)	24
BspCNI	CTCAG	1 cut(s)	338
BspLI	GGNNCC	1 cut(s)	202
BspMI	ACCTGC	1 cut(s)	212
BspT107I	GGYRCC	1 cut(s)	200
BsrDI	GCAATG	2 cut(s)	276, 301
BsrGI	TGTACA	1 cut(s)	163
BssECI	CCNNGG	3 cut(s)	19, 25, 300
BssMI	GATC	1 cut(s)	309
BssT1I	CCWWGG	2 cut(s)	25, 300
Bst4CI	ACNGT	2 cut(s)	75, 253
BstAUI	TGTACA	1 cut(s)	163
BstDEI	CTNAG	1 cut(s)	325
BstDSI	CCRYGG	2 cut(s)	19, 25
BstF5I	GGATG	2 cut(s)	199, 217
BstKTI	GATC	1 cut(s)	312
BstMBI	GATC	1 cut(s)	309
BstSLI	GKGCMC	1 cut(s)	203
BstV1I	GCAGC	2 cut(s)	37, 169
BstV2I	GAAGAC	1 cut(s)	254
BstXI	CCANNNNNNTGG	1 cut(s)	26
BsuRI	GGCC	1 cut(s)	24
BtgI	CCRYGG	2 cut(s)	19, 25
BtsCI	GGATG	2 cut(s)	199, 217
BveI	ACCTGC	1 cut(s)	212
CseI	GACGC	1 cut(s)	55
Csp6I	GTAC	1 cut(s)	164
CviAII	CATG	3 cut(s)	26, 31, 55
CviJI	RGCY	6 cut(s)	13, 24, 37, 97, 148, 305
CviKI_1	RGCY	6 cut(s)	13, 24, 37, 97, 148, 305
CviQI	GTAC	1 cut(s)	164
DdeI	CTNAG	1 cut(s)	325
DpnI	GATC	1 cut(s)	311
DpnII	GATC	1 cut(s)	309
EaeI	YGGCCR	1 cut(s)	22
Eco130I	CCWWGG	2 cut(s)	25, 300
Eco57I	CTGAAG	1 cut(s)	83
EcoT14I	CCWWGG	2 cut(s)	25, 300
ErhI	CCWWGG	2 cut(s)	25, 300
FaeI	CATG	3 cut(s)	29, 34, 58
FaiI	YATR	5 cut(s)	27, 32, 56, 152, 333
FaqI	GGGAC	1 cut(s)	74
FatI	CATG	3 cut(s)	25, 30, 54
FbaI	TGATCA	1 cut(s)	309
Fnu4HI	GCNGC	2 cut(s)	51, 183
FokI	GGATG	2 cut(s)	206, 224
Fsp4HI	GCNGC	2 cut(s)	51, 183
FspBI	CTAG	2 cut(s)	39, 291
GluI	GCNGC	2 cut(s)	51, 183
HaeIII	GGCC	1 cut(s)	24
HgaI	GACGC	1 cut(s)	55
Hin1II	CATG	3 cut(s)	29, 34, 58
HincII	GTYRAC	1 cut(s)	124
HindII	GTYRAC	1 cut(s)	124
HinfI	GANTC	1 cut(s)	83
HpaI	GTTAAC	1 cut(s)	124
Hpy166II	GTNNAC	3 cut(s)	91, 124, 274
Hpy188I	TCNGA	3 cut(s)	102, 211, 267
Hpy188III	TCNNGA	1 cut(s)	313
Hpy8I	GTNNAC	3 cut(s)	91, 124, 274
Hpy99I	CGWCG	1 cut(s)	71
HpyCH4III	ACNGT	2 cut(s)	75, 253
HpyCH4V	TGCA	1 cut(s)	281
HpyF3I	CTNAG	1 cut(s)	325
Hsp92II	CATG	3 cut(s)	29, 34, 58
Ksp22I	TGATCA	1 cut(s)	309
KspAI	GTTAAC	1 cut(s)	124
Kzo9I	GATC	1 cut(s)	309
LpnPI	CCDG	3 cut(s)	123, 207, 217
Lsp1109I	GCAGC	2 cut(s)	37, 169
MaeI	CTAG	2 cut(s)	39, 291
MaeIII	GTNAC	1 cut(s)	80
MalI	GATC	1 cut(s)	311
MboI	GATC	1 cut(s)	309
MboII	GAAGA	1 cut(s)	259
MfeI	CAATTG	1 cut(s)	284
MhlI	GDGCHC	1 cut(s)	203
MluCI	AATT	2 cut(s)	241, 284
MlyI	GAGTC	1 cut(s)	77
MmeI	TCCRAC	1 cut(s)	245
MnlI	CCTC	5 cut(s)	51, 96, 190, 252, 334
MseI	TTAA	2 cut(s)	8, 123
MslI	CAYNNNNRTG	1 cut(s)	24
MunI	CAATTG	1 cut(s)	284
NcoI	CCATGG	1 cut(s)	25
NdeII	GATC	1 cut(s)	309
NlaIII	CATG	3 cut(s)	29, 34, 58
NlaIV	GGNNCC	1 cut(s)	202
NmuCI	GTSAC	1 cut(s)	80
PaqCI	CACCTGC	1 cut(s)	212
PflFI	GACNNNGTC	1 cut(s)	65
PkrI	GCNGC	2 cut(s)	52, 184
PleI	GAGTC	1 cut(s)	77
PpsI	GAGTC	1 cut(s)	77
PspN4I	GGNNCC	1 cut(s)	202
PsyI	GACNNNGTC	1 cut(s)	65
RsaI	GTAC	1 cut(s)	165
RsaNI	GTAC	1 cut(s)	164
RseI	CAYNNNNRTG	1 cut(s)	24
SaqAI	TTAA	2 cut(s)	8, 123
SatI	GCNGC	2 cut(s)	51, 183
Sau3AI	GATC	1 cut(s)	309
SchI	GAGTC	1 cut(s)	77
SduI	GDGCHC	1 cut(s)	203
SetI	ASST	4 cut(s)	99, 107, 150, 206
SmiMI	CAYNNNNRTG	1 cut(s)	24
Sse9I	AATT	2 cut(s)	241, 284
SspMI	CTAG	2 cut(s)	39, 291
StyI	CCWWGG	2 cut(s)	25, 300
TaaI	ACNGT	2 cut(s)	75, 253
TaqI	TCGA	1 cut(s)	69
TasI	AATT	2 cut(s)	241, 284
TatI	WGTACW	1 cut(s)	163
Tru1I	TTAA	2 cut(s)	8, 123
Tru9I	TTAA	2 cut(s)	8, 123
TseFI	GTSAC	1 cut(s)	80
TseI	GCWGC	2 cut(s)	50, 182
Tsp45I	GTSAC	1 cut(s)	80
TspDTI	ATGAA	2 cut(s)	47, 320
TspGWI	ACGGA	1 cut(s)	206
Tth111I	GACNNNGTC	1 cut(s)	65
XapI	RAATTY	1 cut(s)	241
XspI	CTAG	2 cut(s)	39, 291

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.