Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0011056

Physical Location & Seq

Genomic Coordinates Reverse (-)

52605261 .. 52606415

Gene Structure 1155 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0425300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1155 bp

ATGGAGAGCTACGAGTTAATAAAGGAAGTTGGCCATGGAGCATTTGGGACTGTCTGGCGAGCTAAAAATAAGCAGACTGGTGAAGTTGTTGCAATTAAAGAACTCAAGAAAAGATACTATTCATGGGATGAGTGCATGAATCTTCGAGAAGTTAAGTCATTGCAGAAAGTTAATCATCCAAACATTGTGAAGCTAAAACATTTGATCCTATCAGAAAATAATATTTTGTACTTTGTGTTCGAATATATAGAGTTCAGCAACCTGTACCAGCGTATGAAAGATAAGGTAATGCCTTTCCCTGAATCTCAAGTGAGAGATTGGTGTTTAGAAGTTTTCAAAGGCCTTGCTCATATGCATCAACGCGGATATTTTCATCGCGATCTAAAGCCGGAGAACTTGTTGCTTACCAAAGATTTCAAAATCAAGATTGCAGATCTTGGTCTTGCTCGGGAAATCGATTCCCAACCACCCTATACTGAATATGTGTCGACACGCTGGTACCGAGCTCCGGAACTCTTGTTCCGAGGTTTGTATAGCTCTAAAGTTGATATGTGGGCAATGGGTGCAATCATGGCCGAGTTGCTTACTCTCCGCCCTCTATTTCCTGGTATTAGTGAAGCAGATGAAATGTACAAAATTTGCAGTGTACTTGGCACGCCAACCGAGGATTCATGGGCCGATGGGCTCCGTCTTGCAAGAGATATGAACTACCAGTTTCCACAGTTGGCTGGTGTTCATCTTTCTTCACTTATTCCATCAGTTAGTGATCATGCAATTAGCCTCATTAGTTCACTTTGTTCTTGGGACCCTTCCAAGAGGCCAACAGCTGCAGAGGCCCTCCACCATCCTTTCTTCCAGAGTTGCTATTGTGTTCCTCCACCTCTTCGTTGCCACAAATCAACAACTGCTGGAGCAACAAGGGGAGTGTCGGAGCAGCAAAAATATCTGCCTCCTGGAAAGAGAGTAGATCATATTCCTACCTTAGTGAACAAGGGAAGGAACGTTGCACGCAGTACCGTGGGGAAGCCGCTGCATCCACCTCCCATGAAAGCTGGAGTCCAATGGAATGGCAAGTCAAGAGAATCAACCTTACATTTTCAACAACTAAAAGCACAAGTAGTTTTTGATAAGCAATCCATCAATGCAAAGCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005911 GO:0008150 GO:0009292 GO:0009294 GO:0009506 GO:0009893 GO:0009987 GO:0010604 GO:0010638 GO:0019222 GO:0030054 GO:0031056 GO:0031058 GO:0031060 GO:0031062 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0032268 GO:0032270 GO:0033043 GO:0033044 GO:0044764 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051569 GO:0051571 GO:0051704 GO:0055044 GO:0060255 GO:0065007 GO:0080090 GO:1902275 GO:1905269 GO:2001252

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PHD PHD_2 PWWP SET zf-HC5HC2H_2

Protein Analysis

384

Amino Acids

43.98

Weight (kDa)

9.23

Isoelectric Point (pI)

45.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	4 - 285	1.1e-70	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	5 - 197	1.1e-40	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011056)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27910 AT5G53430
fragaria_vesca	FvH4_7g31710 FvH4_7g31710
malus_domestica	MD01G1220300.v1.1 MD07G1289800.v1.1
prunus_persica	Prupe.2G311000_v2.0.a1
pyrus_communis	pycom01g22990 pycom07g26250
rosa_chinensis	RchiOBHm_Chr1g0380901
rosa_laevigata	RLG00000026264
rosa_multiflora	Rmu_sc0002962.1_g000020
rosa_roxburghii	Rroxscaffold_4G00278980
rosa_rugosa	Rorug01G0425200 Rorug01G0425300
rosa_samantha	Rh1AG449100 Rh1BG404800 Rh1CG418800 Rh1DG435200
rosa_wichuraiana	Rw1G039150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	498
AccB1I	GGYRCC	1 cut(s)	498
AccI	GTMKAC	1 cut(s)	488
AccII	CGCG	2 cut(s)	363, 378
AccIII	TCCGGA	1 cut(s)	508
AciI	CCGC	3 cut(s)	363, 592, 1028
AclI	AACGTT	1 cut(s)	1002
AclWI	GGATC	1 cut(s)	199
AcoI	YGGCCR	2 cut(s)	31, 573
AcsI	RAATTY	1 cut(s)	636
AfaI	GTAC	6 cut(s)	230, 266, 500, 632, 648, 1015
AfiI	CCNNNNNNNGG	1 cut(s)	508
AgsI	TTSAA	3 cut(s)	337, 418, 1100
AjnI	CCWGG	2 cut(s)	604, 952
AjuI	GAANNNNNNNTTGG	2 cut(s)	652, 684
AloI	GAACNNNNNNTCC	4 cut(s)	503, 504, 535, 536
AluBI	AGCT	7 cut(s)	9, 62, 193, 506, 537, 827, 1052
AluI	AGCT	7 cut(s)	9, 62, 193, 506, 537, 827, 1052
Alw21I	GWGCWC	1 cut(s)	508
AlwI	GGATC	1 cut(s)	199
Ama87I	CYCGRG	1 cut(s)	447
Aor13HI	TCCGGA	1 cut(s)	508
AoxI	GGCC	6 cut(s)	31, 340, 573, 675, 818, 834
ApeKI	GCWGC	3 cut(s)	827, 934, 1030
ApoI	RAATTY	1 cut(s)	636
Asp718I	GGTACC	1 cut(s)	498
AspS9I	GGNCC	3 cut(s)	675, 805, 835
AsuHPI	GGTGA	1 cut(s)	92
AsuII	TTCGAA	1 cut(s)	240
AvaI	CYCGRG	1 cut(s)	447
AvaII	GGWCC	1 cut(s)	805
BaeI	ACNNNNGTAYC	2 cut(s)	482, 515
BalI	TGGCCA	1 cut(s)	33
BanI	GGYRCC	1 cut(s)	498
BanII	GRGCYC	2 cut(s)	508, 687
Bbv12I	GWGCWC	1 cut(s)	508
BbvI	GCAGC	3 cut(s)	814, 946, 1017
BccI	CCATC	4 cut(s)	674, 763, 852, 1145
BciT130I	CCWGG	2 cut(s)	606, 954
BclI	TGATCA	1 cut(s)	766
BfmI	CTRYAG	1 cut(s)	828
BglII	AGATCT	1 cut(s)	433
BisI	GCNGC	4 cut(s)	828, 935, 1028, 1031
BlsI	GCNGC	4 cut(s)	829, 936, 1029, 1032
Bme1390I	CCNGG	2 cut(s)	606, 954
Bme18I	GGWCC	1 cut(s)	805
BmeT110I	CYCGRG	1 cut(s)	447
BmgT120I	GGNCC	3 cut(s)	675, 805, 835
BmiI	GGNNCC	4 cut(s)	500, 686, 806, 807
BmrFI	CCNGG	2 cut(s)	606, 954
BmsI	GCATC	2 cut(s)	364, 1042
BpmI	CTGGAG	2 cut(s)	930, 1074
Bpu14I	TTCGAA	1 cut(s)	240
BpuEI	CTTGAG	2 cut(s)	89, 291
Bsa29I	ATCGAT	1 cut(s)	456
BsaJI	CCNNGG	4 cut(s)	34, 523, 663, 1017
BsaWI	WCCGGW	1 cut(s)	508
BsaXI	ACNNNNNCTCC	2 cut(s)	383, 413
Bsc4I	CCNNNNNNNGG	1 cut(s)	508
Bse1I	ACTGG	2 cut(s)	82, 712
Bse3DI	GCAATG	2 cut(s)	158, 564
BseAI	TCCGGA	1 cut(s)	508
BseBI	CCWGG	2 cut(s)	606, 954
BseCI	ATCGAT	1 cut(s)	456
BseDI	CCNNGG	4 cut(s)	34, 523, 663, 1017
BseGI	GGATG	4 cut(s)	133, 175, 844, 1033
BseLI	CCNNNNNNNGG	1 cut(s)	508
BseMI	GCAATG	2 cut(s)	158, 564
BseNI	ACTGG	2 cut(s)	82, 712
BseXI	GCAGC	3 cut(s)	814, 946, 1017
Bsh1236I	CGCG	2 cut(s)	363, 378
BshFI	GGCC	6 cut(s)	33, 342, 575, 677, 820, 836
BshNI	GGYRCC	1 cut(s)	498
BshVI	ATCGAT	1 cut(s)	456
BsiHKAI	GWGCWC	1 cut(s)	508
BsiHKCI	CYCGRG	1 cut(s)	447
BsiSI	CCGG	2 cut(s)	389, 509
BslFI	GGGAC	2 cut(s)	61, 818
BslI	CCNNNNNNNGG	1 cut(s)	508
BsmFI	GGGAC	2 cut(s)	61, 818
BsnI	GGCC	6 cut(s)	33, 342, 575, 677, 820, 836
BsoBI	CYCGRG	1 cut(s)	447
Bsp119I	TTCGAA	1 cut(s)	240
Bsp1286I	GDGCHC	2 cut(s)	508, 687
Bsp13I	TCCGGA	1 cut(s)	508
Bsp1407I	TGTACA	1 cut(s)	630
Bsp143I	GATC	5 cut(s)	204, 379, 433, 766, 967
Bsp19I	CCATGG	1 cut(s)	34
Bsp68I	TCGCGA	1 cut(s)	378
BspACI	CCGC	3 cut(s)	363, 592, 1028
BspANI	GGCC	6 cut(s)	33, 342, 575, 677, 820, 836
BspDI	ATCGAT	1 cut(s)	456
BspEI	TCCGGA	1 cut(s)	508
BspFNI	CGCG	2 cut(s)	363, 378
BspLI	GGNNCC	4 cut(s)	500, 686, 806, 807
BspMAI	CTGCAG	1 cut(s)	832
BspPI	GGATC	1 cut(s)	199
BspT104I	TTCGAA	1 cut(s)	240
BspT107I	GGYRCC	1 cut(s)	498
BsrDI	GCAATG	2 cut(s)	158, 564
BsrGI	TGTACA	1 cut(s)	630
BsrI	ACTGG	2 cut(s)	82, 712
BssECI	CCNNGG	4 cut(s)	34, 523, 663, 1017
BssMI	GATC	5 cut(s)	204, 379, 433, 766, 967
BssT1I	CCWWGG	1 cut(s)	34
Bst2UI	CCWGG	2 cut(s)	606, 954
Bst4CI	ACNGT	3 cut(s)	52, 723, 1018
Bst6I	CTCTTC	1 cut(s)	888
BstAPI	GCANNNNNTGC	1 cut(s)	563
BstAUI	TGTACA	1 cut(s)	630
BstBI	TTCGAA	1 cut(s)	240
BstC8I	GCNNGC	3 cut(s)	60, 656, 1009
BstDEI	CTNAG	1 cut(s)	982
BstDSI	CCRYGG	2 cut(s)	34, 1017
BstF5I	GGATG	4 cut(s)	133, 175, 844, 1033
BstFNI	CGCG	2 cut(s)	363, 378
BstKTI	GATC	5 cut(s)	207, 382, 436, 769, 970
BstMBI	GATC	5 cut(s)	204, 379, 433, 766, 967
BstMWI	GCNNNNNNNGC	3 cut(s)	563, 572, 833
BstNI	CCWGG	2 cut(s)	606, 954
BstSCI	CCNGG	2 cut(s)	604, 952
BstSFI	CTRYAG	1 cut(s)	828
BstUI	CGCG	2 cut(s)	363, 378
BstV1I	GCAGC	3 cut(s)	814, 946, 1017
BstX2I	RGATCY	1 cut(s)	433
BstXI	CCANNNNNNTGG	1 cut(s)	1067
BstYI	RGATCY	1 cut(s)	433
Bsu15I	ATCGAT	1 cut(s)	456
BsuRI	GGCC	6 cut(s)	33, 342, 575, 677, 820, 836
BsuTUI	ATCGAT	1 cut(s)	456
BtgI	CCRYGG	2 cut(s)	34, 1017
BtgZI	GCGATG	1 cut(s)	359
BtsCI	GGATG	4 cut(s)	133, 175, 844, 1033
BtsI	GCAGTG	1 cut(s)	649
BtsIMutI	CAGTG	1 cut(s)	649
BtuMI	TCGCGA	1 cut(s)	378
Cac8I	GCNNGC	3 cut(s)	60, 656, 1009
Cfr13I	GGNCC	3 cut(s)	675, 805, 835
ClaI	ATCGAT	1 cut(s)	456
Csp6I	GTAC	6 cut(s)	229, 265, 499, 631, 647, 1014
CviAII	CATG	7 cut(s)	35, 123, 136, 571, 672, 770, 1045
CviQI	GTAC	6 cut(s)	229, 265, 499, 631, 647, 1014
DdeI	CTNAG	1 cut(s)	982
DpnI	GATC	5 cut(s)	206, 381, 435, 768, 969
DpnII	GATC	5 cut(s)	204, 379, 433, 766, 967
EaeI	YGGCCR	2 cut(s)	31, 573
Eam1104I	CTCTTC	1 cut(s)	888
EarI	CTCTTC	1 cut(s)	888
EciI	GGCGGA	1 cut(s)	581
Ecl136II	GAGCTC	1 cut(s)	506
Eco130I	CCWWGG	1 cut(s)	34
Eco147I	AGGCCT	1 cut(s)	342
Eco24I	GRGCYC	2 cut(s)	508, 687
Eco47I	GGWCC	1 cut(s)	805
Eco53kI	GAGCTC	1 cut(s)	506
Eco88I	CYCGRG	1 cut(s)	447
EcoICRI	GAGCTC	1 cut(s)	506
EcoO109I	RGGNCCY	2 cut(s)	805, 835
EcoRII	CCWGG	2 cut(s)	604, 952
EcoT14I	CCWWGG	1 cut(s)	34
EcoT22I	ATGCAT	1 cut(s)	357
EcoT38I	GRGCYC	2 cut(s)	508, 687
ErhI	CCWWGG	1 cut(s)	34
FaeI	CATG	7 cut(s)	38, 126, 139, 574, 675, 773, 1048
FaqI	GGGAC	2 cut(s)	61, 818
FatI	CATG	7 cut(s)	34, 122, 135, 570, 671, 769, 1044
FauNDI	CATATG	1 cut(s)	351
FbaI	TGATCA	1 cut(s)	766
FblI	GTMKAC	1 cut(s)	488
Fnu4HI	GCNGC	4 cut(s)	828, 935, 1028, 1031
FokI	GGATG	4 cut(s)	140, 162, 831, 1020
FriOI	GRGCYC	2 cut(s)	508, 687
Fsp4HI	GCNGC	4 cut(s)	828, 935, 1028, 1031
GluI	GCNGC	4 cut(s)	828, 935, 1028, 1031
GsuI	CTGGAG	2 cut(s)	930, 1074
HaeIII	GGCC	6 cut(s)	33, 342, 575, 677, 820, 836
HapII	CCGG	2 cut(s)	389, 509
Hin1II	CATG	7 cut(s)	38, 126, 139, 574, 675, 773, 1048
HincII	GTYRAC	1 cut(s)	489
HindII	GTYRAC	1 cut(s)	489
HinfI	GANTC	6 cut(s)	139, 302, 458, 668, 1056, 1082
HpaII	CCGG	2 cut(s)	389, 509
HphI	GGTGA	1 cut(s)	92
Hpy166II	GTNNAC	4 cut(s)	489, 647, 791, 988
Hpy188I	TCNGA	3 cut(s)	214, 524, 931
Hpy188III	TCNNGA	8 cut(s)	106, 146, 377, 424, 449, 509, 856, 1077
Hpy8I	GTNNAC	4 cut(s)	489, 647, 791, 988
HpyAV	CCTTC	2 cut(s)	819, 990
HpyCH4III	ACNGT	3 cut(s)	52, 723, 1018
HpyCH4IV	ACGT	1 cut(s)	1002
HpyF10VI	GCNNNNNNNGC	3 cut(s)	563, 572, 833
HpyF3I	CTNAG	1 cut(s)	982
HpySE526I	ACGT	1 cut(s)	1002
Hsp92II	CATG	7 cut(s)	38, 126, 139, 574, 675, 773, 1048
KflI	GGGWCCC	1 cut(s)	805
Kpn2I	TCCGGA	1 cut(s)	508
KpnI	GGTACC	1 cut(s)	502
Ksp22I	TGATCA	1 cut(s)	766
Kzo9I	GATC	5 cut(s)	204, 379, 433, 766, 967
LmnI	GCTCC	5 cut(s)	38, 511, 690, 911, 931
Lsp1109I	GCAGC	3 cut(s)	814, 946, 1017
LweI	GCATC	2 cut(s)	364, 1042
MaeII	ACGT	1 cut(s)	1002
MalI	GATC	5 cut(s)	206, 381, 435, 768, 969
MboI	GATC	5 cut(s)	204, 379, 433, 766, 967
MboII	GAAGA	4 cut(s)	134, 735, 844, 875
MflI	RGATCY	1 cut(s)	433
MhlI	GDGCHC	2 cut(s)	508, 687
MlsI	TGGCCA	1 cut(s)	33
MluCI	AATT	3 cut(s)	93, 636, 774
MluNI	TGGCCA	1 cut(s)	33
MlyI	GAGTC	1 cut(s)	1065
MmeI	TCCRAC	1 cut(s)	909
Mox20I	TGGCCA	1 cut(s)	33
Mph1103I	ATGCAT	1 cut(s)	357
MroI	TCCGGA	1 cut(s)	508
MscI	TGGCCA	1 cut(s)	33
MseI	TTAA	4 cut(s)	17, 96, 153, 171
Msp20I	TGGCCA	1 cut(s)	33
MspA1I	CMGCKG	2 cut(s)	827, 1030
MspI	CCGG	2 cut(s)	389, 509
MspR9I	CCNGG	2 cut(s)	606, 954
MvaI	CCWGG	2 cut(s)	606, 954
MvnI	CGCG	2 cut(s)	363, 378
MwoI	GCNNNNNNNGC	3 cut(s)	563, 572, 833
NcoI	CCATGG	1 cut(s)	34
NdeI	CATATG	1 cut(s)	351
NdeII	GATC	5 cut(s)	204, 379, 433, 766, 967
NlaIII	CATG	7 cut(s)	38, 126, 139, 574, 675, 773, 1048
NlaIV	GGNNCC	4 cut(s)	500, 686, 806, 807
NmeAIII	GCCGAG	1 cut(s)	601
NruI	TCGCGA	1 cut(s)	378
NsiI	ATGCAT	1 cut(s)	357
NspV	TTCGAA	1 cut(s)	240
PceI	AGGCCT	1 cut(s)	342
PcsI	WCGNNNNNNNCGW	1 cut(s)	499
PfeI	GAWTC	5 cut(s)	139, 302, 458, 668, 1082
PfoI	TCCNGGA	1 cut(s)	952
PkrI	GCNGC	4 cut(s)	829, 936, 1029, 1032
PleI	GAGTC	1 cut(s)	1064
PpsI	GAGTC	1 cut(s)	1064
PpuMI	RGGWCCY	1 cut(s)	805
Psp124BI	GAGCTC	1 cut(s)	508
Psp1406I	AACGTT	1 cut(s)	1002
Psp5II	RGGWCCY	1 cut(s)	805
Psp6I	CCWGG	2 cut(s)	604, 952
PspGI	CCWGG	2 cut(s)	604, 952
PspN4I	GGNNCC	4 cut(s)	500, 686, 806, 807
PspPI	GGNCC	3 cut(s)	675, 805, 835
PspPPI	RGGWCCY	1 cut(s)	805
PsrI	GAACNNNNNNTAC	2 cut(s)	221, 253
PstI	CTGCAG	1 cut(s)	832
PsuI	RGATCY	1 cut(s)	433
PvuII	CAGCTG	1 cut(s)	827
RruI	TCGCGA	1 cut(s)	378
RsaI	GTAC	6 cut(s)	230, 266, 500, 632, 648, 1015
RsaNI	GTAC	6 cut(s)	229, 265, 499, 631, 647, 1014
SacI	GAGCTC	1 cut(s)	508
SalI	GTCGAC	1 cut(s)	487
SaqAI	TTAA	4 cut(s)	17, 96, 153, 171
SatI	GCNGC	4 cut(s)	828, 935, 1028, 1031
Sau3AI	GATC	5 cut(s)	204, 379, 433, 766, 967
Sau96I	GGNCC	3 cut(s)	675, 805, 835
SchI	GAGTC	1 cut(s)	1065
ScrFI	CCNGG	2 cut(s)	606, 954
SduI	GDGCHC	2 cut(s)	508, 687
SfaNI	GCATC	2 cut(s)	364, 1042
SfcI	CTRYAG	1 cut(s)	828
SfuI	TTCGAA	1 cut(s)	240
SinI	GGWCC	1 cut(s)	805
SmlI	CTYRAG	2 cut(s)	104, 306
SmoI	CTYRAG	2 cut(s)	104, 306
Sse9I	AATT	3 cut(s)	93, 636, 774
SseBI	AGGCCT	1 cut(s)	342
SsiI	CCGC	3 cut(s)	363, 592, 1028
SspI	AATATT	1 cut(s)	223
SstI	GAGCTC	1 cut(s)	508
StuI	AGGCCT	1 cut(s)	342
StyD4I	CCNGG	2 cut(s)	604, 952
StyI	CCWWGG	1 cut(s)	34
TaaI	ACNGT	3 cut(s)	52, 723, 1018
TaiI	ACGT	1 cut(s)	1005
TaqI	TCGA	4 cut(s)	145, 240, 456, 488
TasI	AATT	3 cut(s)	93, 636, 774
TatI	WGTACW	3 cut(s)	228, 630, 646
TauI	GCSGC	1 cut(s)	1030
TfiI	GAWTC	5 cut(s)	139, 302, 458, 668, 1082
Tru1I	TTAA	4 cut(s)	17, 96, 153, 171
Tru9I	TTAA	4 cut(s)	17, 96, 153, 171
TscAI	CASTG	1 cut(s)	649
TseI	GCWGC	3 cut(s)	827, 934, 1030
TspDTI	ATGAA	9 cut(s)	111, 152, 290, 362, 639, 660, 719, 725, 1061
TspGWI	ACGGA	1 cut(s)	677
TspRI	CASTG	1 cut(s)	649
VpaK11BI	GGWCC	1 cut(s)	805
XapI	RAATTY	1 cut(s)	636
XcmI	CCANNNNNNNNNTGG	1 cut(s)	41
XmiI	GTMKAC	1 cut(s)	488
Zsp2I	ATGCAT	1 cut(s)	357

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.