Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0007920

Physical Location & Seq

Genomic Coordinates Forward (+)

36161735 .. 36171355

Gene Structure 9621 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1304100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3651 bp

ATGGCGAACTTAGCAATGACCGGTATACTGGAGAAGATGACGGGCAAGGATAAGGATTTCAGATATATGGCTACTTCTGATTTACTGAACGAATTAAACAAAGATAGTTTTAAAGCTGATTCTGATCTGGAGATAAAGTTGACAAGTATTATTATACAGCAACTTGATGATGTTGCTGGTGATGTATCTGGATTGGCCGTGAAATGTCTCGTTCCATTAGTTAAGAAGGTCAGCGAGCCACGAGTTGTGGAGATGACAAATAAGCTTTGTGAGAAATTGCTAAAGGACAAGGATCATCGTGATATTGCAAGCATAGCTTTGAAGACTATTATTGCTGAAATTTCCACTCAGTCTCTTGCCCAGTCTATTCTTCTATCTATTTTGCCGCAGTTGGTTAAAGGAATTACTGATCCAGGAATGAACCATGAGATCAAATGTGAATGTCTTGATAACTTATGTGATGTTCTTCATAAGTTTGGCAATTTAATGGCAACTGATCATGAGCTGCTATTAAGTGCTCTCTTGTCTCAGTTGAGCTACAATCAAGCCAGCGTGAGGAAGAAAACTGTGTCATGCATTGCTTCCCTTGCATCGAGCTTGTCAGATGATCTGTTAGCAAAGGCAACCACTGAAGTTGTCCAGAAATTGAGAAATAAAGGCACAAAATCAGAAATGACTCGAACAAATATTCAGATGATTGGTGCTTTAAGTCGTGCTGTTGGATATCGTTTTGGACCCCATCTTGCTGACACTGTCCCAGTGTTAATTAATTACTGCACAAGTGCATCAGAGAATGACGAGGAGCTTCGTGAATACAGCTTGCAGGCATTAGAGAGTTTTCTGCTTAGGTGCCCCAGGGACATTTCTCCGTATTGTGATGAAATTCTTCATCTTAACTTGGAATATCTAAGTTATGACCCAAACTTCACGGATAACATGGAAGAAGATACTGATGATGAAACTCATGAGGAGGAGGAAGATGATGGGAGTGCGACAGAATATACAGATGATGAAGATGTCAGCTGGAAAGTTCGTAGAGCAGCAGCTAAATGCTTATCAGCATTAATTGTATCACGTCCTGAGATGCTATCAAAGCTGTATGGGGAGGCTTGTCCGAAATTAATTGACAGATTTAAAGAGAGGGAGGAAAATGTCAAGATGGACATTTTCAATACATTCACTGAACTGTTGCAGCAAACTGGAAATGTTACAAAAGGACAAAATGACATAAATGAACAGAGTCCAAGGTGGCTACTGAAGCAAGAAGTGCCAAAGATCATCAGATCTATAAATAGGCAGCTACGTGAGAAATCTATCAAGACAAAGGTTGGTGCGTTTTCCGTTTTGAAAGAACTTGTGGTGGTCTTGCCAGATTGCCTGGCGGATCACATTGGCTCACTCATTCCCGGAATTGAAAAGGCATTAAATGATAAGTCCTCTACCTCCAATTTGAAGATTGAAGCTCTTATATTTACAAGATTGGTCTTGGCATCGCATTATCCTTCTGTTTTCCATCCTTACATCAAGGCTCTTTCTAGTCCTGTTTTATCTGCTGTGGGGGAGCGTTATTACAAAGTCACAGCTGAGGCATTAAGAGTGTGTGGGGAACTTGTCCGTGTGGTTCGCCCAAATATTGAGGGAGTTGGTTTTGACTTCAAACCTTACGTTCATCCAATATATAATGCCATAATGTCACGCTTGACAAACCAAGATCAAGATCAGGAGGTCAAGGAATGTGCTATATCTTGCATGGGTCTAGTTGTGTCAACATTTGGGGATAACCTTGATGTTGAGTTACCTGTATGCCTTCCTGTGCTTGTTGATCGAATGGGAAACGAGATTACTCGACTTACAGCTGTGAAGGCATTTGCCGTCATTGCCGCTTCTCCGCTGAAAATAGATCTGTCCTGTGTGTTGGAGCAAGTGATTGCGGAGTTGACTGCATTCCTAAGGAAGGCTAATCGGCCTTTAAGACAGGCAACATTGGGGACCTTGAATTCCCTAATTGTTGCTTACGGCGACAAAATTGGTTCAGCAGCTTATGAAGTTATTATTGTAGAGCTTGCTACACTGATAAGTGATTCAGACTTGCATATGACGGCCCTTGCCCTGGAACTCTGCTGCACCTTGATGGCTGACAGGTCAAGCCCAGTTGTTGGTTTGGCTGTTAGAAGCAAAGTTCTTCCGCAAGCACTAACATTAATTAGAAGCTCATTGCTGCAGGGGCAAGCCCTTTCGGCTTTGCAAAACTTTTTTGCTTCCTTGGTGTATTCTGCAAATACAAGTTTTGATGCCTTGCTAGACTCTCTTCTTTTGAGTGCTAAACCATCTCCTCAGTTGGGTGGGGTTGCAAAGCAAGCTTTGTATTCAATAGCTCAATGTGTGGCCGTCCTTTGCCTTGCTGCTGGTGACAAGCAATGTTCATCTACCGTGAAAATGCTCACTGAAATTCTCAAAGATGACAGCACTACAAATTCAGCTAAGCAGCACCTTGCTTTGCTGTGTCTCGGGGAGATTGGGAGGCGGAAAAATCTAGGCTCCCACGACCATATAGAGAATATTGTCATTGAGTCCTTTCAATCTCCTTTCGAAGAGATTAAATCTGCAGCCTCCTATGCTCTTGGCAATATTGCTGTTGGTAACCTACTCAAGTATTTGCCTTTTATATTGGACCAGATTGACAATCAGCAGAAAAAACAGTACCTCTTGCTTCATTCTCTGAAGGAGGTCATAGTAAGGCAATCTGTAGATAAAGCAGAGTTTCCAGATTCCAGTGTTGAGAAGATACTTAATTTACTTTTTAATTACTGTGAAAGCGAGGAAGAGGGTGTTCGCAACGTTGTAGCTGAGTGTCTTGGTAAAATAGCACTTATTGAACCCACAAAACTTGTTCCTGCACTGAAGGTACGAACAACCAGTCCAGCTGCTTTCACAAGAGCTACTGTTGTCATTGCAGTTAAATATTCGATAGTTGAGAGGCCGGAGAGGATAGATGAGATATTGTATCCTGAAATTGCATCATTCCTGATGCTTATTAAGGATCATGACCGGCATGTGAGGCGTGCGGCTGTGTTGGTTTTAAGTACATTTGCCCACAATAAGCCAAATCTGATCAAGGGGCTCCTGCCAGAGTTGTTGCCGCTTCTTTATGATCAAACTGTAATCAAGAAAGAATTGATCAGGACAGTTGATCTCGGCCCTTTTAAGCACATTGTAGATGATGGACTTGAGTTAAGGAAGGCTGCATTTGAATGTGTGGACACATTGCTGGATAGTTGTCTTGATCAAGTGAACCCTTCGTCTTTTATTGTTCCTTATCTTAGATCTGGTCTGGATGATCATTATGATGTTAAGATGCCTTGCCATCTTATCCTCTCAAAGCTTGCCGACAAGTGTCCATCTGCTGTACTGGCAGTGCTGGACTCGTTGGTGGATCCTCTCCAAAAAACTATCAACTTTAAGCCAAAGCAAGATGCTGTCAAGCAAGAAGTAGACCGCAATGAAGACATGATTCGCAGCGCTCTGAGAGCTATTGCATCCTTGCATCGTATAAGCGGTGGAGATTGCAGCCTTAAGTTCAAGAACCTTATGAATGAAATTTTAAAATCTCAAACGCTCGGTGACAAGTATGTTTCTATCCGAAATGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0006464 GO:0006807 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009733 GO:0009791 GO:0009987 GO:0010033 GO:0010051 GO:0010228 GO:0010265 GO:0016020 GO:0016043 GO:0016567 GO:0019538 GO:0022414 GO:0022607 GO:0030312 GO:0032446 GO:0032501 GO:0032502 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061458 GO:0065003 GO:0070647 GO:0071704 GO:0071840 GO:0071944 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TIP120

Protein Analysis

1217

Amino Acids

134.68

Weight (kDa)

5.63

Isoelectric Point (pI)

48.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_CAND1	PF25782	459 - 584	7.5e-48	CAND1-like, TPR repeats
TIP120	PF08623	1037 - 1199	7e-56	TATA-binding protein interacting (TIP20)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007920)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G02560 AT2G02560
fragaria_vesca	FvH4_7g33400 FvH4_7g33400
malus_domestica	MD01G1232300.v1.1 MD07G1304100.v1.1
prunus_persica	Prupe.2G322700_v2.0.a1 Prupe.2G322700_v2.0.a1 Prupe.2G322700_v2.0.a1
pyrus_communis	pycom01g24070 pycom07g27710
rosa_chinensis	RchiOBHm_Chr1g0383371
rosa_laevigata	RLG00000026107
rosa_multiflora	Rmu_co8130632.1_g000001 Rmu_sc0007173.1_g000011 Rmu_sc0019557.1_g000001 Rmu_sc0020036.1_g000001
rosa_roxburghii	Rroxscaffold_4G00277350
rosa_rugosa	Rorug01G0441000
rosa_samantha	Rh1AG466900 Rh1BG424200 Rh1CG437300 Rh1DG456900
rosa_wichuraiana	Rw1G040570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	849
AccB7I	CCANNNNNTGG	1 cut(s)	2156
AccI	GTMKAC	2 cut(s)	25, 3492
AclI	AACGTT	1 cut(s)	2838
AclWI	GGATC	6 cut(s)	300, 404, 1392, 3048, 3428, 3441
AcoI	YGGCCR	2 cut(s)	195, 2385
AcsI	RAATTY	6 cut(s)	339, 882, 1996, 2448, 2473, 3597
AcuI	CTGAAG	4 cut(s)	651, 1277, 2741, 2921
AfaI	GTAC	4 cut(s)	2702, 2907, 3085, 3408
AfeI	AGCGCT	1 cut(s)	3520
AfiI	CCNNNNNNNGG	5 cut(s)	555, 1954, 2110, 2156, 2339
AflII	CTTAAG	1 cut(s)	3572
AgeI	ACCGGT	1 cut(s)	20
AjiI	CACGTC	1 cut(s)	1076
AjnI	CCWGG	4 cut(s)	412, 854, 1377, 2109
AloI	GAACNNNNNNTCC	2 cut(s)	2902, 2934
Alw21I	GWGCWC	1 cut(s)	520
Alw26I	GTCTC	4 cut(s)	212, 357, 531, 2510
AlwI	GGATC	6 cut(s)	300, 404, 1392, 3048, 3428, 3441
Ama87I	CYCGRG	1 cut(s)	2507
Aor51HI	AGCGCT	1 cut(s)	3520
AoxI	GGCC	6 cut(s)	195, 1964, 2100, 2385, 2978, 3196
ApoI	RAATTY	6 cut(s)	339, 882, 1996, 2448, 2473, 3597
ArsI	GACNNNNNNTTYG	2 cut(s)	2902, 2934
AseI	ATTAAT	4 cut(s)	768, 1064, 1121, 2201
AsiGI	ACCGGT	1 cut(s)	20
Asp700I	GAANNNNTTC	1 cut(s)	885
AspLEI	GCGC	1 cut(s)	3521
AspS9I	GGNCC	5 cut(s)	734, 1989, 2101, 2671, 3197
AsuC2I	CCSGG	1 cut(s)	1407
AsuHPI	GGTGA	3 cut(s)	191, 2420, 3632
AsuII	TTCGAA	1 cut(s)	2589
AvaI	CYCGRG	1 cut(s)	2507
AvaII	GGWCC	3 cut(s)	734, 1989, 2671
AxyI	CCTNAGG	1 cut(s)	1949
BaeGI	GKGCMC	1 cut(s)	854
BamHI	GGATCC	1 cut(s)	3433
BanI	GGYRCC	1 cut(s)	849
BanII	GRGCYC	1 cut(s)	3123
BauI	CACGAG	1 cut(s)	240
BbsI	GAAGAC	2 cut(s)	329, 3510
Bbv12I	GWGCWC	1 cut(s)	520
BbvCI	CCTCAGC	1 cut(s)	1584
BccI	CCATC	9 cut(s)	747, 977, 1153, 1521, 2125, 2335, 3215, 3372, 3406
BceAI	ACGGC	5 cut(s)	182, 1856, 2032, 2115, 2372
BciT130I	CCWGG	4 cut(s)	414, 856, 1379, 2111
BciVI	GTATCC	1 cut(s)	3015
BclI	TGATCA	6 cut(s)	496, 3111, 3151, 3177, 3283, 3337
BcnI	CCSGG	1 cut(s)	1407
BcoDI	GTCTC	4 cut(s)	212, 357, 531, 2510
BfaI	CTAG	4 cut(s)	1536, 1757, 2300, 2534
BfmI	CTRYAG	3 cut(s)	2219, 2604, 2745
BfoI	RGCGCY	1 cut(s)	3522
BfrI	CTTAAG	1 cut(s)	3572
BfuI	GTATCC	1 cut(s)	3015
BglI	GCCNNNNNGGC	1 cut(s)	2237
BglII	AGATCT	3 cut(s)	1283, 1900, 3323
BlpI	GCTNAGC	1 cut(s)	2481
Bme1390I	CCNGG	5 cut(s)	414, 856, 1379, 1407, 2111
Bme18I	GGWCC	3 cut(s)	734, 1989, 2671
BmeT110I	CYCGRG	1 cut(s)	2507
BmgBI	CACGTC	1 cut(s)	1076
BmgT120I	GGNCC	5 cut(s)	734, 1989, 2101, 2671, 3197
BmiI	GGNNCC	6 cut(s)	736, 851, 1990, 2539, 3122, 3435
BmrFI	CCNGG	5 cut(s)	414, 856, 1379, 1407, 2111
BmrI	ACTGGG	3 cut(s)	355, 752, 2144
BmuI	ACTGGG	3 cut(s)	355, 752, 2144
BoxI	GACNNNNGTC	1 cut(s)	3393
BpiI	GAAGAC	2 cut(s)	329, 3510
BpmI	CTGGAG	2 cut(s)	50, 149
Bpu10I	CCTNAGC	2 cut(s)	845, 1584
Bpu1102I	GCTNAGC	1 cut(s)	2481
Bpu14I	TTCGAA	1 cut(s)	2589
BpuEI	CTTGAG	2 cut(s)	2633, 3248
BpuMI	CCSGG	1 cut(s)	1407
BsaAI	YACGTR	1 cut(s)	1304
BsaBI	GATNNNNATC	2 cut(s)	123, 1716
BsaJI	CCNNGG	5 cut(s)	854, 855, 1244, 2109, 2262
BsaWI	WCCGGW	1 cut(s)	20
BsaXI	ACNNNNNCTCC	2 cut(s)	122, 152
Bsc4I	CCNNNNNNNGG	5 cut(s)	555, 1954, 2110, 2156, 2339
Bse118I	RCCGGY	2 cut(s)	20, 3048
Bse1I	ACTGG	8 cut(s)	33, 361, 758, 1204, 2150, 2772, 2916, 3414
Bse21I	CCTNAGG	1 cut(s)	1949
Bse3DI	GCAATG	8 cut(s)	21, 576, 1875, 2213, 2423, 2949, 3263, 3505
Bse8I	GATNNNNATC	2 cut(s)	123, 1716
BseBI	CCWGG	4 cut(s)	414, 856, 1379, 2111
BseDI	CCNNGG	5 cut(s)	854, 855, 1244, 2109, 2262
BseGI	GGATG	4 cut(s)	1513, 1669, 3340, 3536
BseJI	GATNNNNATC	2 cut(s)	123, 1716
BseLI	CCNNNNNNNGG	5 cut(s)	555, 1954, 2110, 2156, 2339
BseMI	GCAATG	8 cut(s)	21, 576, 1875, 2213, 2423, 2949, 3263, 3505
BseMII	CTCAG	7 cut(s)	362, 542, 1071, 1575, 2348, 2838, 3515
BseNI	ACTGG	8 cut(s)	33, 361, 758, 1204, 2150, 2772, 2916, 3414
BseRI	GAGGAG	4 cut(s)	815, 983, 986, 2322
BseSI	GKGCMC	1 cut(s)	854
BsgI	GTGCAG	3 cut(s)	760, 2107, 2880
BshFI	GGCC	6 cut(s)	197, 1966, 2102, 2387, 2980, 3198
BshNI	GGYRCC	1 cut(s)	849
BshTI	ACCGGT	1 cut(s)	20
BsiHKAI	GWGCWC	1 cut(s)	520
BsiHKCI	CYCGRG	1 cut(s)	2507
BsiSI	CCGG	4 cut(s)	21, 1407, 2981, 3049
BslFI	GGGAC	3 cut(s)	740, 872, 2002
BslI	CCNNNNNNNGG	5 cut(s)	555, 1954, 2110, 2156, 2339
BsmAI	GTCTC	4 cut(s)	212, 357, 531, 2510
BsmFI	GGGAC	3 cut(s)	740, 872, 2002
BsmI	GAATGC	1 cut(s)	1943
BsnI	GGCC	6 cut(s)	197, 1966, 2102, 2387, 2980, 3198
BsoBI	CYCGRG	1 cut(s)	2507
Bsp119I	TTCGAA	1 cut(s)	2589
Bsp1286I	GDGCHC	3 cut(s)	520, 854, 3123
Bsp1720I	GCTNAGC	1 cut(s)	2481
BspANI	GGCC	6 cut(s)	197, 1966, 2102, 2387, 2980, 3198
BspCNI	CTCAG	7 cut(s)	361, 541, 1072, 1576, 2347, 2839, 3516
BspHI	TCATGA	3 cut(s)	499, 964, 3043
BspLI	GGNNCC	6 cut(s)	736, 851, 1990, 2539, 3122, 3435
BspMAI	CTGCAG	2 cut(s)	2223, 2608
BspPI	GGATC	6 cut(s)	300, 404, 1392, 3048, 3428, 3441
BspT104I	TTCGAA	1 cut(s)	2589
BspT107I	GGYRCC	1 cut(s)	849
BspTI	CTTAAG	1 cut(s)	3572
BsrDI	GCAATG	8 cut(s)	21, 576, 1875, 2213, 2423, 2949, 3263, 3505
BsrFI	RCCGGY	2 cut(s)	20, 3048
BsrI	ACTGG	8 cut(s)	33, 361, 758, 1204, 2150, 2772, 2916, 3414
BssAI	RCCGGY	2 cut(s)	20, 3048
BssECI	CCNNGG	5 cut(s)	854, 855, 1244, 2109, 2262
BssNAI	GTATAC	1 cut(s)	26
BssSI	CACGAG	1 cut(s)	240
BssT1I	CCWWGG	2 cut(s)	1244, 2262
Bst1107I	GTATAC	1 cut(s)	26
Bst2BI	CACGAG	1 cut(s)	240
Bst2UI	CCWGG	4 cut(s)	414, 856, 1379, 2111
Bst4CI	ACNGT	9 cut(s)	568, 754, 1188, 2431, 2700, 2810, 2944, 3160, 3187
Bst6I	CTCTTC	3 cut(s)	2313, 2586, 2817
BstAFI	CTTAAG	1 cut(s)	3572
BstAPI	GCANNNNNTGC	1 cut(s)	1267
BstBAI	YACGTR	1 cut(s)	1304
BstBI	TTCGAA	1 cut(s)	2589
BstEII	GGTNACC	1 cut(s)	2639
BstENI	CCTNNNNNAGG	1 cut(s)	1952
BstF5I	GGATG	4 cut(s)	1513, 1669, 3340, 3536
BstH2I	RGCGCY	1 cut(s)	3522
BstHHI	GCGC	1 cut(s)	3521
BstMAI	GTCTC	4 cut(s)	212, 357, 531, 2510
BstNI	CCWGG	4 cut(s)	414, 856, 1379, 2111
BstNSI	RCATGY	1 cut(s)	3056
BstPAI	GACNNNNGTC	1 cut(s)	3393
BstPI	GGTNACC	1 cut(s)	2639
BstSCI	CCNGG	5 cut(s)	412, 854, 1377, 1405, 2109
BstSFI	CTRYAG	3 cut(s)	2219, 2604, 2745
BstSLI	GKGCMC	1 cut(s)	854
BstV2I	GAAGAC	2 cut(s)	329, 3510
BstX2I	RGATCY	4 cut(s)	1283, 1900, 3323, 3433
BstYI	RGATCY	4 cut(s)	1283, 1900, 3323, 3433
BstZ17I	GTATAC	1 cut(s)	26
Bsu36I	CCTNAGG	1 cut(s)	1949
BsuI	GTATCC	1 cut(s)	3015
BsuRI	GGCC	6 cut(s)	197, 1966, 2102, 2387, 2980, 3198
BtgZI	GCGATG	1 cut(s)	1476
BtrI	CACGTC	1 cut(s)	1076
BtsCI	GGATG	4 cut(s)	1513, 1669, 3340, 3536
BtsI	GCAGTG	1 cut(s)	3420
BtsIMutI	CAGTG	9 cut(s)	627, 750, 765, 1179, 2069, 2442, 2779, 2897, 3420
CciI	TCATGA	3 cut(s)	499, 964, 3043
CfoI	GCGC	1 cut(s)	3521
Cfr10I	RCCGGY	2 cut(s)	20, 3048
Cfr13I	GGNCC	5 cut(s)	734, 1989, 2101, 2671, 3197
Csp6I	GTAC	4 cut(s)	2701, 2906, 3084, 3407
CspAI	ACCGGT	1 cut(s)	20
CspCI	CAANNNNNGTGG	4 cut(s)	616, 651, 2869, 2904
CviAII	CATG	9 cut(s)	425, 500, 573, 937, 965, 1750, 3044, 3053, 3508
CviQI	GTAC	4 cut(s)	2701, 2906, 3084, 3407
DraI	TTTAAA	3 cut(s)	112, 1135, 3603
EaeI	YGGCCR	2 cut(s)	195, 2385
Eam1104I	CTCTTC	3 cut(s)	2313, 2586, 2817
EarI	CTCTTC	3 cut(s)	2313, 2586, 2817
EciI	GGCGGA	2 cut(s)	1397, 2539
Eco130I	CCWWGG	2 cut(s)	1244, 2262
Eco24I	GRGCYC	1 cut(s)	3123
Eco32I	GATATC	1 cut(s)	725
Eco47I	GGWCC	3 cut(s)	734, 1989, 2671
Eco47III	AGCGCT	1 cut(s)	3520
Eco57I	CTGAAG	4 cut(s)	651, 1277, 2741, 2921
Eco81I	CCTNAGG	1 cut(s)	1949
Eco88I	CYCGRG	1 cut(s)	2507
Eco91I	GGTNACC	1 cut(s)	2639
EcoNI	CCTNNNNNAGG	1 cut(s)	1952
EcoO109I	RGGNCCY	1 cut(s)	1989
EcoO65I	GGTNACC	1 cut(s)	2639
EcoRI	GAATTC	1 cut(s)	1996
EcoRII	CCWGG	4 cut(s)	412, 854, 1377, 2109
EcoRV	GATATC	1 cut(s)	725
EcoT14I	CCWWGG	2 cut(s)	1244, 2262
EcoT22I	ATGCAT	1 cut(s)	578
EcoT38I	GRGCYC	1 cut(s)	3123
ErhI	CCWWGG	2 cut(s)	1244, 2262
FaeI	CATG	9 cut(s)	428, 503, 576, 940, 968, 1753, 3047, 3056, 3511
FalI	AAGNNNNNCTT	2 cut(s)	301, 333
FaqI	GGGAC	3 cut(s)	740, 872, 2002
FatI	CATG	9 cut(s)	424, 499, 572, 936, 964, 1749, 3043, 3052, 3507
FauNDI	CATATG	1 cut(s)	2094
FbaI	TGATCA	6 cut(s)	496, 3111, 3151, 3177, 3283, 3337
FblI	GTMKAC	2 cut(s)	25, 3492
FokI	GGATG	4 cut(s)	1500, 1656, 3347, 3523
FriOI	GRGCYC	1 cut(s)	3123
FspBI	CTAG	4 cut(s)	1536, 1757, 2300, 2534
GlaI	GCGC	1 cut(s)	3520
GsuI	CTGGAG	2 cut(s)	50, 149
HaeII	RGCGCY	1 cut(s)	3522
HaeIII	GGCC	6 cut(s)	197, 1966, 2102, 2387, 2980, 3198
HapII	CCGG	4 cut(s)	21, 1407, 2981, 3049
HhaI	GCGC	1 cut(s)	3521
Hin1II	CATG	9 cut(s)	428, 503, 576, 940, 968, 1753, 3047, 3056, 3511
Hin6I	GCGC	1 cut(s)	3519
HinP1I	GCGC	1 cut(s)	3519
HincII	GTYRAC	3 cut(s)	141, 1767, 1938
HindII	GTYRAC	3 cut(s)	141, 1767, 1938
HindIII	AAGCTT	3 cut(s)	263, 2358, 3380
HinfI	GANTC	9 cut(s)	119, 676, 1240, 2081, 2303, 2570, 2768, 3422, 3511
HpaII	CCGG	4 cut(s)	21, 1407, 2981, 3049
HphI	GGTGA	3 cut(s)	191, 2420, 3632
Hpy166II	GTNNAC	7 cut(s)	26, 141, 1767, 1938, 3259, 3292, 3493
Hpy8I	GTNNAC	7 cut(s)	26, 141, 1767, 1938, 3259, 3292, 3493
HpyAV	CCTTC	9 cut(s)	220, 1512, 1817, 1855, 1948, 2716, 2896, 3232, 3306
HpyCH4III	ACNGT	9 cut(s)	568, 754, 1188, 2431, 2700, 2810, 2944, 3160, 3187
HpyCH4IV	ACGT	4 cut(s)	1075, 1303, 1665, 2838
HpySE526I	ACGT	4 cut(s)	1075, 1303, 1665, 2838
Hsp92II	CATG	9 cut(s)	428, 503, 576, 940, 968, 1753, 3047, 3056, 3511
HspAI	GCGC	1 cut(s)	3519
Ksp22I	TGATCA	6 cut(s)	496, 3111, 3151, 3177, 3283, 3337
LmnI	GCTCC	5 cut(s)	802, 1561, 1918, 2543, 3126
MaeI	CTAG	4 cut(s)	1536, 1757, 2300, 2534
MaeII	ACGT	4 cut(s)	1075, 1303, 1665, 2838
MaeIII	GTNAC	7 cut(s)	1207, 1576, 1692, 1794, 2408, 2639, 3620
MflI	RGATCY	4 cut(s)	1283, 1900, 3323, 3433
MhlI	GDGCHC	3 cut(s)	520, 854, 3123
MlyI	GAGTC	5 cut(s)	670, 1249, 2297, 2579, 3416
MmeI	TCCRAC	2 cut(s)	700, 1896
Mph1103I	ATGCAT	1 cut(s)	578
MroXI	GAANNNNTTC	1 cut(s)	885
MslI	CAYNNNNRTG	3 cut(s)	2129, 3250, 3345
MspA1I	CMGCKG	5 cut(s)	1023, 1583, 1856, 1891, 2924
MspCI	CTTAAG	1 cut(s)	3572
MspI	CCGG	4 cut(s)	21, 1407, 2981, 3049
MspR9I	CCNGG	5 cut(s)	414, 856, 1379, 1407, 2111
Mva1269I	GAATGC	1 cut(s)	1943
MvaI	CCWGG	4 cut(s)	414, 856, 1379, 2111
NciI	CCSGG	1 cut(s)	1407
NdeI	CATATG	1 cut(s)	2094
NlaIII	CATG	9 cut(s)	428, 503, 576, 940, 968, 1753, 3047, 3056, 3511
NlaIV	GGNNCC	6 cut(s)	736, 851, 1990, 2539, 3122, 3435
NmeAIII	GCCGAG	1 cut(s)	3174
NmuCI	GTSAC	4 cut(s)	1576, 1692, 2408, 3620
NsiI	ATGCAT	1 cut(s)	578
NspI	RCATGY	1 cut(s)	3056
NspV	TTCGAA	1 cut(s)	2589
PacI	TTAATTAA	1 cut(s)	768
PagI	TCATGA	3 cut(s)	499, 964, 3043
PasI	CCCWGGG	1 cut(s)	855
PctI	GAATGC	1 cut(s)	1943
PdmI	GAANNNNTTC	1 cut(s)	885
PfeI	GAWTC	4 cut(s)	119, 2081, 2768, 3511
PflFI	GACNNNGTC	1 cut(s)	752
PflMI	CCANNNNNTGG	1 cut(s)	2156
PfoI	TCCNGGA	2 cut(s)	412, 1405
PinAI	ACCGGT	1 cut(s)	20
PleI	GAGTC	5 cut(s)	670, 1248, 2297, 2578, 3416
PpsI	GAGTC	5 cut(s)	670, 1248, 2297, 2578, 3416
Ppu21I	YACGTR	1 cut(s)	1304
PpuMI	RGGWCCY	1 cut(s)	1989
PshAI	GACNNNNGTC	1 cut(s)	3393
PshBI	ATTAAT	4 cut(s)	768, 1064, 1121, 2201
Psp1406I	AACGTT	1 cut(s)	2838
Psp5II	RGGWCCY	1 cut(s)	1989
Psp6I	CCWGG	4 cut(s)	412, 854, 1377, 2109
PspEI	GGTNACC	1 cut(s)	2639
PspGI	CCWGG	4 cut(s)	412, 854, 1377, 2109
PspN4I	GGNNCC	6 cut(s)	736, 851, 1990, 2539, 3122, 3435
PspPI	GGNCC	5 cut(s)	734, 1989, 2101, 2671, 3197
PspPPI	RGGWCCY	1 cut(s)	1989
PstI	CTGCAG	2 cut(s)	2223, 2608
PsuI	RGATCY	4 cut(s)	1283, 1900, 3323, 3433
PsyI	GACNNNGTC	1 cut(s)	752
PvuII	CAGCTG	4 cut(s)	1023, 1583, 1856, 2924
RsaI	GTAC	4 cut(s)	2702, 2907, 3085, 3408
RsaNI	GTAC	4 cut(s)	2701, 2906, 3084, 3407
RseI	CAYNNNNRTG	3 cut(s)	2129, 3250, 3345
Sau96I	GGNCC	5 cut(s)	734, 1989, 2101, 2671, 3197
SchI	GAGTC	5 cut(s)	670, 1249, 2297, 2579, 3416
ScrFI	CCNGG	5 cut(s)	414, 856, 1379, 1407, 2111
SduI	GDGCHC	3 cut(s)	520, 854, 3123
SfcI	CTRYAG	3 cut(s)	2219, 2604, 2745
SfuI	TTCGAA	1 cut(s)	2589
SinI	GGWCC	3 cut(s)	734, 1989, 2671
SmiMI	CAYNNNNRTG	3 cut(s)	2129, 3250, 3345
SmlI	CTYRAG	3 cut(s)	2648, 3227, 3572
SmoI	CTYRAG	3 cut(s)	2648, 3227, 3572
SspI	AATATT	5 cut(s)	688, 1633, 2560, 2629, 2963
SspMI	CTAG	4 cut(s)	1536, 1757, 2300, 2534
StyD4I	CCNGG	5 cut(s)	412, 854, 1377, 1405, 2109
StyI	CCWWGG	2 cut(s)	1244, 2262
TaaI	ACNGT	9 cut(s)	568, 754, 1188, 2431, 2700, 2810, 2944, 3160, 3187
TaiI	ACGT	4 cut(s)	1078, 1306, 1668, 2841
TaqI	TCGA	6 cut(s)	593, 679, 1825, 1846, 2589, 2966
TatI	WGTACW	2 cut(s)	3083, 3406
TauI	GCSGC	4 cut(s)	388, 1883, 3068, 3142
TfiI	GAWTC	4 cut(s)	119, 2081, 2768, 3511
TscAI	CASTG	9 cut(s)	634, 757, 765, 1186, 2076, 2449, 2779, 2904, 3420
TseFI	GTSAC	4 cut(s)	1576, 1692, 2408, 3620
Tsp45I	GTSAC	4 cut(s)	1576, 1692, 2408, 3620
TspGWI	ACGGA	4 cut(s)	858, 944, 1330, 1604
TspRI	CASTG	9 cut(s)	634, 757, 765, 1186, 2076, 2449, 2779, 2904, 3420
Tth111I	GACNNNGTC	1 cut(s)	752
Van91I	CCANNNNNTGG	1 cut(s)	2156
Vha464I	CTTAAG	1 cut(s)	3572
VpaK11BI	GGWCC	3 cut(s)	734, 1989, 2671
VspI	ATTAAT	4 cut(s)	768, 1064, 1121, 2201
XagI	CCTNNNNNAGG	1 cut(s)	1952
XapI	RAATTY	6 cut(s)	339, 882, 1996, 2448, 2473, 3597
XceI	RCATGY	1 cut(s)	3056
XmiI	GTMKAC	2 cut(s)	25, 3492
XmnI	GAANNNNTTC	1 cut(s)	885
XspI	CTAG	4 cut(s)	1536, 1757, 2300, 2534
Zsp2I	ATGCAT	1 cut(s)	578

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.