Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8130632.1

Orthogroup ID

OG0007920

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 629

Gene Structure 629 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8130632.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 371 bp

gctttgcaaaacttctttgcttccttggtgtattctgcaaatacaagttttgatgccttgctagactctcttctatcaagtgctaaaccatctcctcagtctggtggggttgcaaaacaagctctatattcaatagctcaatgcgtggctgtcctttgtcttgctgctggtgatgagaaatgttcatctacagtgcaaatgcttaccgaaattctcaaacatgacagcagtacaaactcggctaagcagcatcttgcattgctatgtcttggggagattgggagaaggaaagatctaagctctcatgcccatattgagaatattgttatcgagtcatttcagtctcctttcgaggagattaagtctgcagc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0006464 GO:0006807 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009733 GO:0009791 GO:0009987 GO:0010033 GO:0010051 GO:0010228 GO:0010265 GO:0016020 GO:0016043 GO:0016567 GO:0019538 GO:0022414 GO:0022607 GO:0030312 GO:0032446 GO:0032501 GO:0032502 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061458 GO:0065003 GO:0070647 GO:0071704 GO:0071840 GO:0071944 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TIP120

Protein Analysis

124

Amino Acids

13.18

Weight (kDa)

5.73

Isoelectric Point (pI)

71.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007920)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G02560 AT2G02560
fragaria_vesca	FvH4_7g33400 FvH4_7g33400
malus_domestica	MD01G1232300.v1.1 MD07G1304100.v1.1
prunus_persica	Prupe.2G322700_v2.0.a1 Prupe.2G322700_v2.0.a1 Prupe.2G322700_v2.0.a1
pyrus_communis	pycom01g24070 pycom07g27710
rosa_chinensis	RchiOBHm_Chr1g0383371
rosa_laevigata	RLG00000026107
rosa_multiflora	Rmu_co8130632.1_g000001 Rmu_sc0007173.1_g000011 Rmu_sc0019557.1_g000001 Rmu_sc0020036.1_g000001
rosa_roxburghii	Rroxscaffold_4G00277350
rosa_rugosa	Rorug01G0441000
rosa_samantha	Rh1AG466900 Rh1BG424200 Rh1CG437300 Rh1DG456900
rosa_wichuraiana	Rw1G040570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	210
AfaI	GTAC	1 cut(s)	232
AfiI	CCNNNNNNNGG	1 cut(s)	101
AgsI	TTSAA	1 cut(s)	132
AluBI	AGCT	3 cut(s)	122, 137, 300
AluI	AGCT	3 cut(s)	122, 137, 300
Alw26I	GTCTC	1 cut(s)	348
ApeKI	GCWGC	3 cut(s)	164, 247, 368
ApoI	RAATTY	1 cut(s)	210
AsuHPI	GGTGA	1 cut(s)	182
BbvI	GCAGC	2 cut(s)	151, 259
BccI	CCATC	1 cut(s)	97
BcoDI	GTCTC	1 cut(s)	348
BfaI	CTAG	1 cut(s)	62
BfmI	CTRYAG	2 cut(s)	189, 366
BglII	AGATCT	1 cut(s)	292
BisI	GCNGC	3 cut(s)	165, 248, 369
BlpI	GCTNAGC	1 cut(s)	243
BlsI	GCNGC	3 cut(s)	166, 249, 370
BmsI	GCATC	2 cut(s)	43, 259
Bpu1102I	GCTNAGC	1 cut(s)	243
BsaJI	CCNNGG	1 cut(s)	24
BsaXI	ACNNNNNCTCC	1 cut(s)	347
Bsc4I	CCNNNNNNNGG	1 cut(s)	101
Bse3DI	GCAATG	1 cut(s)	257
BseDI	CCNNGG	1 cut(s)	24
BseLI	CCNNNNNNNGG	1 cut(s)	101
BseMI	GCAATG	1 cut(s)	257
BseMII	CTCAG	1 cut(s)	110
BseRI	GAGGAG	2 cut(s)	84, 368
BseXI	GCAGC	2 cut(s)	151, 259
BslI	CCNNNNNNNGG	1 cut(s)	101
BsmAI	GTCTC	1 cut(s)	348
Bsp143I	GATC	1 cut(s)	292
Bsp1720I	GCTNAGC	1 cut(s)	243
BspCNI	CTCAG	1 cut(s)	109
BspMAI	CTGCAG	1 cut(s)	370
BsrDI	GCAATG	1 cut(s)	257
BssECI	CCNNGG	1 cut(s)	24
BssMI	GATC	1 cut(s)	292
BssT1I	CCWWGG	1 cut(s)	24
Bst4CI	ACNGT	1 cut(s)	193
Bst6I	CTCTTC	1 cut(s)	75
BstDEI	CTNAG	3 cut(s)	96, 243, 296
BstKTI	GATC	1 cut(s)	295
BstMAI	GTCTC	1 cut(s)	348
BstMBI	GATC	1 cut(s)	292
BstMWI	GCNNNNNNNGC	1 cut(s)	119
BstSFI	CTRYAG	2 cut(s)	189, 366
BstV1I	GCAGC	2 cut(s)	151, 259
BstX2I	RGATCY	1 cut(s)	292
BstYI	RGATCY	1 cut(s)	292
BtsIMutI	CAGTG	1 cut(s)	198
Csp6I	GTAC	1 cut(s)	231
CviAII	CATG	2 cut(s)	221, 305
CviJI	RGCY	5 cut(s)	122, 137, 149, 242, 300
CviKI_1	RGCY	5 cut(s)	122, 137, 149, 242, 300
CviQI	GTAC	1 cut(s)	231
DdeI	CTNAG	3 cut(s)	96, 243, 296
DpnI	GATC	1 cut(s)	294
DpnII	GATC	1 cut(s)	292
Eam1104I	CTCTTC	1 cut(s)	75
EarI	CTCTTC	1 cut(s)	75
Eco130I	CCWWGG	1 cut(s)	24
EcoT14I	CCWWGG	1 cut(s)	24
ErhI	CCWWGG	1 cut(s)	24
FaeI	CATG	2 cut(s)	224, 308
FaiI	YATR	5 cut(s)	127, 222, 265, 306, 312
FatI	CATG	2 cut(s)	220, 304
Fnu4HI	GCNGC	3 cut(s)	165, 248, 369
Fsp4HI	GCNGC	3 cut(s)	165, 248, 369
FspBI	CTAG	1 cut(s)	62
GluI	GCNGC	3 cut(s)	165, 248, 369
Hin1II	CATG	2 cut(s)	224, 308
HinfI	GANTC	2 cut(s)	65, 332
HphI	GGTGA	1 cut(s)	182
HpyAV	CCTTC	1 cut(s)	279
HpyCH4III	ACNGT	1 cut(s)	193
HpyCH4V	TGCA	6 cut(s)	7, 38, 113, 196, 257, 368
HpyF10VI	GCNNNNNNNGC	1 cut(s)	119
HpyF3I	CTNAG	3 cut(s)	96, 243, 296
Hsp92II	CATG	2 cut(s)	224, 308
Kzo9I	GATC	1 cut(s)	292
LpnPI	CCDG	2 cut(s)	87, 153
Lsp1109I	GCAGC	2 cut(s)	151, 259
LweI	GCATC	2 cut(s)	43, 259
MaeI	CTAG	1 cut(s)	62
MalI	GATC	1 cut(s)	294
MboI	GATC	1 cut(s)	292
MboII	GAAGA	1 cut(s)	62
MflI	RGATCY	1 cut(s)	292
MluCI	AATT	1 cut(s)	210
MlyI	GAGTC	2 cut(s)	59, 341
MnlI	CCTC	2 cut(s)	105, 346
MseI	TTAA	1 cut(s)	360
MslI	CAYNNNNRTG	1 cut(s)	262
MwoI	GCNNNNNNNGC	1 cut(s)	119
NdeII	GATC	1 cut(s)	292
NlaIII	CATG	2 cut(s)	224, 308
NmeAIII	GCCGAG	1 cut(s)	218
PkrI	GCNGC	3 cut(s)	166, 249, 370
PleI	GAGTC	2 cut(s)	59, 340
PpsI	GAGTC	2 cut(s)	59, 340
PstI	CTGCAG	1 cut(s)	370
PsuI	RGATCY	1 cut(s)	292
RsaI	GTAC	1 cut(s)	232
RsaNI	GTAC	1 cut(s)	231
RseI	CAYNNNNRTG	1 cut(s)	262
SaqAI	TTAA	1 cut(s)	360
SatI	GCNGC	3 cut(s)	165, 248, 369
Sau3AI	GATC	1 cut(s)	292
SchI	GAGTC	2 cut(s)	59, 341
SetI	ASST	3 cut(s)	124, 139, 302
SfaNI	GCATC	2 cut(s)	43, 259
SfcI	CTRYAG	2 cut(s)	189, 366
SmiMI	CAYNNNNRTG	1 cut(s)	262
Sse9I	AATT	1 cut(s)	210
SspI	AATATT	1 cut(s)	322
SspMI	CTAG	1 cut(s)	62
StyI	CCWWGG	1 cut(s)	24
TaaI	ACNGT	1 cut(s)	193
TaqI	TCGA	2 cut(s)	330, 351
TasI	AATT	1 cut(s)	210
TatI	WGTACW	1 cut(s)	230
Tru1I	TTAA	1 cut(s)	360
Tru9I	TTAA	1 cut(s)	360
TscAI	CASTG	1 cut(s)	198
TseI	GCWGC	3 cut(s)	164, 247, 368
TspDTI	ATGAA	1 cut(s)	174
TspRI	CASTG	1 cut(s)	198
XapI	RAATTY	1 cut(s)	210
XspI	CTAG	1 cut(s)	62

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.