Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0020036.1

Orthogroup ID

OG0007920

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 2059

Gene Structure 2059 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0020036.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1268 bp

gtgttttggatcaagtgattgcagagttgactgcattcttacggaaggctaatcggcctctaaggcaggcaacactggggaccctgaattccctgattgttgcctatggcgataaaatcggtccatcagcttatgaagttattattgttgaacttgcaacactgataagtgattcagacttgcatatgacggcccttgccctggaactttgctgcaccttgatggcagacaggtcaagcccagttgttggtttggctgttagaaataaagttcttccgcaagcgctaacattaattaaaagctcgctgctacaggggcaagctctatcggctttgcaaaacttctttgcttccttggtgtattctgcaaatacaagttttgatgccttgctagactctcttctatcaagtgctaaaccatctcctcagtctggtggggttgcaaaacaagctctatattcaatagctcaatgcgtggctgtcctttgtcttgctgctggtgatgagaaatgttcatctacagtgcaaatgcttaccgaaattctcaaacatgacagcagtacaaactcggctaagcagcatcttgcattgctatgtcttggggagattgggagaaggaaagatctaagctctcatgcccatattgagaatattgttatcgagtcatttcagtctcctttcgaggagattaagtctgcagcctcatatgctcttggcaatattgcagttggtaacctattcaaatatttgccttttatcttggaccagattgataatcagcagaaaaaacagtatctcttgcttcattctttgaaagaggtcatagtaaggcaatctgtagataaagctgagtttcaggacagtagtgttgaaaaaatactaaatttactttttaatcactgtgaaagtgaggaagagggtgttcgcaatgtggttgctgaatgtctgggtaaaattgcgcttattgaacctgcaaaactggttcctgcacttaaggtgcggacaaccagcccagctgctttcacaagagctacggttgtcattgcagtcaagtattcagtagtggagaggccagagaagatagacgggatcttatatcctgaaatctcatcattcctgatgcttattaaggatcatgaccggcatgtcaggcgtgcagctgtgttggctttaagtacattcgcccataataagccaaacctcatcaaggggcttctgccagaattgttgccacttctttatgatcagactgttattaaggtaggctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0006464 GO:0006807 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009733 GO:0009791 GO:0009987 GO:0010033 GO:0010051 GO:0010228 GO:0010265 GO:0016020 GO:0016043 GO:0016567 GO:0019538 GO:0022414 GO:0022607 GO:0030312 GO:0032446 GO:0032501 GO:0032502 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061458 GO:0065003 GO:0070647 GO:0071704 GO:0071840 GO:0071944 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TIP120

Protein Analysis

421

Amino Acids

45.82

Weight (kDa)

6.86

Isoelectric Point (pI)

53.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007920)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G02560 AT2G02560
fragaria_vesca	FvH4_7g33400 FvH4_7g33400
malus_domestica	MD01G1232300.v1.1 MD07G1304100.v1.1
prunus_persica	Prupe.2G322700_v2.0.a1 Prupe.2G322700_v2.0.a1 Prupe.2G322700_v2.0.a1
pyrus_communis	pycom01g24070 pycom07g27710
rosa_chinensis	RchiOBHm_Chr1g0383371
rosa_laevigata	RLG00000026107
rosa_multiflora	Rmu_co8130632.1_g000001 Rmu_sc0007173.1_g000011 Rmu_sc0019557.1_g000001 Rmu_sc0020036.1_g000001
rosa_roxburghii	Rroxscaffold_4G00277350
rosa_rugosa	Rorug01G0441000
rosa_samantha	Rh1AG466900 Rh1BG424200 Rh1CG437300 Rh1DG456900
rosa_wichuraiana	Rw1G040570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1144
Acc36I	ACCTGC	1 cut(s)	978
AccB7I	CCANNNNNTGG	1 cut(s)	247
AciI	CCGC	2 cut(s)	277, 999
AclWI	GGATC	3 cut(s)	17, 1096, 1139
AcsI	RAATTY	3 cut(s)	87, 539, 882
AfaI	GTAC	2 cut(s)	561, 1176
AfeI	AGCGCT	1 cut(s)	284
AfiI	CCNNNNNNNGG	4 cut(s)	201, 247, 430, 1206
AflII	CTTAAG	1 cut(s)	991
AgsI	TTSAA	6 cut(s)	151, 461, 741, 813, 871, 967
AjnI	CCWGG	1 cut(s)	200
Alw26I	GTCTC	1 cut(s)	677
AlwI	GGATC	3 cut(s)	17, 1096, 1139
Aor51HI	AGCGCT	1 cut(s)	284
AoxI	GGCC	3 cut(s)	55, 191, 1069
ApeKI	GCWGC	7 cut(s)	212, 306, 493, 576, 697, 1015, 1156
ApoI	RAATTY	3 cut(s)	87, 539, 882
AseI	ATTAAT	1 cut(s)	292
AspLEI	GCGC	2 cut(s)	285, 960
AspS9I	GGNCC	4 cut(s)	80, 121, 192, 762
AsuHPI	GGTGA	1 cut(s)	511
AvaII	GGWCC	3 cut(s)	80, 121, 762
BbvI	GCAGC	7 cut(s)	199, 293, 480, 588, 709, 1002, 1168
BccI	CCATC	3 cut(s)	132, 216, 426
BceAI	ACGGC	1 cut(s)	206
BciT130I	CCWGG	1 cut(s)	202
BclI	TGATCA	1 cut(s)	1242
BcoDI	GTCTC	1 cut(s)	677
BfaI	CTAG	1 cut(s)	391
BfmI	CTRYAG	4 cut(s)	310, 518, 695, 836
BfoI	RGCGCY	1 cut(s)	286
BfrI	CTTAAG	1 cut(s)	991
BfuAI	ACCTGC	1 cut(s)	978
BglI	GCCNNNNNGGC	1 cut(s)	63
BglII	AGATCT	1 cut(s)	621
BisI	GCNGC	7 cut(s)	213, 307, 494, 577, 698, 1016, 1157
BlpI	GCTNAGC	1 cut(s)	572
BlsI	GCNGC	7 cut(s)	214, 308, 495, 578, 699, 1017, 1158
Bme1390I	CCNGG	1 cut(s)	202
Bme18I	GGWCC	3 cut(s)	80, 121, 762
BmgT120I	GGNCC	4 cut(s)	80, 121, 192, 762
BmiI	GGNNCC	3 cut(s)	81, 82, 983
BmrFI	CCNGG	1 cut(s)	202
BmrI	ACTGGG	2 cut(s)	85, 235
BmsI	GCATC	3 cut(s)	372, 588, 1109
BmuI	ACTGGG	2 cut(s)	85, 235
Bpu1102I	GCTNAGC	1 cut(s)	572
BsaJI	CCNNGG	2 cut(s)	200, 353
BsaXI	ACNNNNNCTCC	2 cut(s)	676, 706
Bsc4I	CCNNNNNNNGG	4 cut(s)	201, 247, 430, 1206
Bse118I	RCCGGY	1 cut(s)	1139
Bse1I	ACTGG	3 cut(s)	80, 241, 983
Bse3DI	GCAATG	3 cut(s)	586, 933, 1040
BseBI	CCWGG	1 cut(s)	202
BseDI	CCNNGG	2 cut(s)	200, 353
BseLI	CCNNNNNNNGG	4 cut(s)	201, 247, 430, 1206
BseMI	GCAATG	3 cut(s)	586, 933, 1040
BseMII	CTCAG	2 cut(s)	439, 839
BseNI	ACTGG	3 cut(s)	80, 241, 983
BseRI	GAGGAG	2 cut(s)	413, 697
BseXI	GCAGC	7 cut(s)	199, 293, 480, 588, 709, 1002, 1168
BseYI	CCCAGC	1 cut(s)	1011
BsgI	GTGCAG	3 cut(s)	198, 971, 1175
BshFI	GGCC	3 cut(s)	57, 193, 1071
BsiSI	CCGG	1 cut(s)	1140
BslFI	GGGAC	1 cut(s)	93
BslI	CCNNNNNNNGG	4 cut(s)	201, 247, 430, 1206
BsmAI	GTCTC	1 cut(s)	677
BsmFI	GGGAC	1 cut(s)	93
BsmI	GAATGC	1 cut(s)	34
BsnI	GGCC	3 cut(s)	57, 193, 1071
Bsp143I	GATC	5 cut(s)	9, 621, 1088, 1131, 1242
Bsp1720I	GCTNAGC	1 cut(s)	572
BspACI	CCGC	2 cut(s)	277, 999
BspANI	GGCC	3 cut(s)	57, 193, 1071
BspCNI	CTCAG	2 cut(s)	438, 840
BspHI	TCATGA	1 cut(s)	1134
BspLI	GGNNCC	3 cut(s)	81, 82, 983
BspMAI	CTGCAG	1 cut(s)	699
BspMI	ACCTGC	1 cut(s)	978
BspPI	GGATC	3 cut(s)	17, 1096, 1139
BspTI	CTTAAG	1 cut(s)	991
BsrDI	GCAATG	3 cut(s)	586, 933, 1040
BsrFI	RCCGGY	1 cut(s)	1139
BsrI	ACTGG	3 cut(s)	80, 241, 983
BssAI	RCCGGY	1 cut(s)	1139
BssECI	CCNNGG	2 cut(s)	200, 353
BssMI	GATC	5 cut(s)	9, 621, 1088, 1131, 1242
BssT1I	CCWWGG	1 cut(s)	353
Bst2UI	CCWGG	1 cut(s)	202
Bst4CI	ACNGT	6 cut(s)	522, 791, 862, 901, 1035, 1251
Bst6I	CTCTTC	2 cut(s)	404, 908
BstAFI	CTTAAG	1 cut(s)	991
BstC8I	GCNNGC	5 cut(s)	68, 281, 304, 320, 1154
BstDEI	CTNAG	5 cut(s)	61, 425, 572, 625, 848
BstEII	GGTNACC	1 cut(s)	730
BstENI	CCTNNNNNAGG	1 cut(s)	1204
BstH2I	RGCGCY	1 cut(s)	286
BstHHI	GCGC	2 cut(s)	285, 960
BstKTI	GATC	5 cut(s)	12, 624, 1091, 1134, 1245
BstMAI	GTCTC	1 cut(s)	677
BstMBI	GATC	5 cut(s)	9, 621, 1088, 1131, 1242
BstMWI	GCNNNNNNNGC	7 cut(s)	63, 315, 328, 448, 706, 1149, 1165
BstNI	CCWGG	1 cut(s)	202
BstNSI	RCATGY	1 cut(s)	1147
BstPI	GGTNACC	1 cut(s)	730
BstSCI	CCNGG	1 cut(s)	200
BstSFI	CTRYAG	4 cut(s)	310, 518, 695, 836
BstV1I	GCAGC	7 cut(s)	199, 293, 480, 588, 709, 1002, 1168
BstX2I	RGATCY	2 cut(s)	621, 1088
BstYI	RGATCY	2 cut(s)	621, 1088
BsuRI	GGCC	3 cut(s)	57, 193, 1071
BtsIMutI	CAGTG	4 cut(s)	73, 160, 527, 897
BveI	ACCTGC	1 cut(s)	978
Cac8I	GCNNGC	5 cut(s)	68, 281, 304, 320, 1154
CciI	TCATGA	1 cut(s)	1134
CfoI	GCGC	2 cut(s)	285, 960
Cfr10I	RCCGGY	1 cut(s)	1139
Cfr13I	GGNCC	4 cut(s)	80, 121, 192, 762
Csp6I	GTAC	2 cut(s)	560, 1175
CviAII	CATG	4 cut(s)	550, 634, 1135, 1144
CviQI	GTAC	2 cut(s)	560, 1175
DdeI	CTNAG	5 cut(s)	61, 425, 572, 625, 848
DpnI	GATC	5 cut(s)	11, 623, 1090, 1133, 1244
DpnII	GATC	5 cut(s)	9, 621, 1088, 1131, 1242
DrdI	GACNNNNNNGTC	1 cut(s)	1144
DseDI	GACNNNNNNGTC	1 cut(s)	1144
Eam1104I	CTCTTC	2 cut(s)	404, 908
EarI	CTCTTC	2 cut(s)	404, 908
Eco130I	CCWWGG	1 cut(s)	353
Eco47I	GGWCC	3 cut(s)	80, 121, 762
Eco47III	AGCGCT	1 cut(s)	284
Eco91I	GGTNACC	1 cut(s)	730
EcoNI	CCTNNNNNAGG	1 cut(s)	1204
EcoO109I	RGGNCCY	1 cut(s)	80
EcoO65I	GGTNACC	1 cut(s)	730
EcoRI	GAATTC	1 cut(s)	87
EcoRII	CCWGG	1 cut(s)	200
EcoT14I	CCWWGG	1 cut(s)	353
ErhI	CCWWGG	1 cut(s)	353
FaeI	CATG	4 cut(s)	553, 637, 1138, 1147
FaqI	GGGAC	1 cut(s)	93
FatI	CATG	4 cut(s)	549, 633, 1134, 1143
FauNDI	CATATG	2 cut(s)	185, 705
FbaI	TGATCA	1 cut(s)	1242
Fnu4HI	GCNGC	7 cut(s)	213, 307, 494, 577, 698, 1016, 1157
Fsp4HI	GCNGC	7 cut(s)	213, 307, 494, 577, 698, 1016, 1157
FspBI	CTAG	1 cut(s)	391
GlaI	GCGC	2 cut(s)	284, 959
GluI	GCNGC	7 cut(s)	213, 307, 494, 577, 698, 1016, 1157
GsaI	CCCAGC	1 cut(s)	1015
HaeII	RGCGCY	1 cut(s)	286
HaeIII	GGCC	3 cut(s)	57, 193, 1071
HapII	CCGG	1 cut(s)	1140
HhaI	GCGC	2 cut(s)	285, 960
Hin1II	CATG	4 cut(s)	553, 637, 1138, 1147
Hin6I	GCGC	2 cut(s)	283, 958
HinP1I	GCGC	2 cut(s)	283, 958
HincII	GTYRAC	1 cut(s)	29
HindII	GTYRAC	1 cut(s)	29
HinfI	GANTC	3 cut(s)	172, 394, 661
HpaII	CCGG	1 cut(s)	1140
HphI	GGTGA	1 cut(s)	511
Hpy166II	GTNNAC	1 cut(s)	29
Hpy188I	TCNGA	2 cut(s)	177, 1247
Hpy188III	TCNNGA	4 cut(s)	856, 1099, 1116, 1135
Hpy8I	GTNNAC	1 cut(s)	29
HpyAV	CCTTC	2 cut(s)	39, 608
HpyCH4III	ACNGT	6 cut(s)	522, 791, 862, 901, 1035, 1251
HpyF10VI	GCNNNNNNNGC	7 cut(s)	63, 315, 328, 448, 706, 1149, 1165
HpyF3I	CTNAG	5 cut(s)	61, 425, 572, 625, 848
Hsp92II	CATG	4 cut(s)	553, 637, 1138, 1147
HspAI	GCGC	2 cut(s)	283, 958
KflI	GGGWCCC	1 cut(s)	80
Ksp22I	TGATCA	1 cut(s)	1242
Kzo9I	GATC	5 cut(s)	9, 621, 1088, 1131, 1242
Lsp1109I	GCAGC	7 cut(s)	199, 293, 480, 588, 709, 1002, 1168
LweI	GCATC	3 cut(s)	372, 588, 1109
MaeI	CTAG	1 cut(s)	391
MaeIII	GTNAC	1 cut(s)	730
MalI	GATC	5 cut(s)	11, 623, 1090, 1133, 1244
MboI	GATC	5 cut(s)	9, 621, 1088, 1131, 1242
MboII	GAAGA	4 cut(s)	265, 391, 925, 1089
MflI	RGATCY	2 cut(s)	621, 1088
MluCI	AATT	6 cut(s)	87, 293, 539, 882, 953, 1222
MlyI	GAGTC	2 cut(s)	388, 670
MnlI	CCTC	9 cut(s)	68, 434, 675, 711, 810, 903, 909, 1061, 1210
MseI	TTAA	8 cut(s)	292, 296, 689, 893, 992, 1127, 1171, 1256
MslI	CAYNNNNRTG	2 cut(s)	220, 591
MspA1I	CMGCKG	2 cut(s)	1015, 1159
MspCI	CTTAAG	1 cut(s)	991
MspI	CCGG	1 cut(s)	1140
MspR9I	CCNGG	1 cut(s)	202
Mva1269I	GAATGC	1 cut(s)	34
MvaI	CCWGG	1 cut(s)	202
MwoI	GCNNNNNNNGC	7 cut(s)	63, 315, 328, 448, 706, 1149, 1165
NdeI	CATATG	2 cut(s)	185, 705
NdeII	GATC	5 cut(s)	9, 621, 1088, 1131, 1242
NlaIII	CATG	4 cut(s)	553, 637, 1138, 1147
NlaIV	GGNNCC	3 cut(s)	81, 82, 983
NmeAIII	GCCGAG	1 cut(s)	547
NspI	RCATGY	1 cut(s)	1147
PacI	TTAATTAA	1 cut(s)	296
PagI	TCATGA	1 cut(s)	1134
PctI	GAATGC	1 cut(s)	34
PfeI	GAWTC	1 cut(s)	172
PflMI	CCANNNNNTGG	1 cut(s)	247
PkrI	GCNGC	7 cut(s)	214, 308, 495, 578, 699, 1017, 1158
PleI	GAGTC	2 cut(s)	388, 669
PpsI	GAGTC	2 cut(s)	388, 669
PpuMI	RGGWCCY	1 cut(s)	80
PshBI	ATTAAT	1 cut(s)	292
Psp5II	RGGWCCY	1 cut(s)	80
Psp6I	CCWGG	1 cut(s)	200
PspEI	GGTNACC	1 cut(s)	730
PspFI	CCCAGC	1 cut(s)	1011
PspGI	CCWGG	1 cut(s)	200
PspN4I	GGNNCC	3 cut(s)	81, 82, 983
PspPI	GGNCC	4 cut(s)	80, 121, 192, 762
PspPPI	RGGWCCY	1 cut(s)	80
PstI	CTGCAG	1 cut(s)	699
PsuI	RGATCY	2 cut(s)	621, 1088
PvuII	CAGCTG	2 cut(s)	1015, 1159
RsaI	GTAC	2 cut(s)	561, 1176
RsaNI	GTAC	2 cut(s)	560, 1175
RseI	CAYNNNNRTG	2 cut(s)	220, 591
SaqAI	TTAA	8 cut(s)	292, 296, 689, 893, 992, 1127, 1171, 1256
SatI	GCNGC	7 cut(s)	213, 307, 494, 577, 698, 1016, 1157
Sau3AI	GATC	5 cut(s)	9, 621, 1088, 1131, 1242
Sau96I	GGNCC	4 cut(s)	80, 121, 192, 762
SchI	GAGTC	2 cut(s)	388, 670
ScrFI	CCNGG	1 cut(s)	202
SfaNI	GCATC	3 cut(s)	372, 588, 1109
SfcI	CTRYAG	4 cut(s)	310, 518, 695, 836
SinI	GGWCC	3 cut(s)	80, 121, 762
SmiMI	CAYNNNNRTG	2 cut(s)	220, 591
SmlI	CTYRAG	1 cut(s)	991
SmoI	CTYRAG	1 cut(s)	991
Sse9I	AATT	6 cut(s)	87, 293, 539, 882, 953, 1222
SsiI	CCGC	2 cut(s)	277, 999
SspI	AATATT	3 cut(s)	651, 720, 745
SspMI	CTAG	1 cut(s)	391
StyD4I	CCNGG	1 cut(s)	200
StyI	CCWWGG	1 cut(s)	353
TaaI	ACNGT	6 cut(s)	522, 791, 862, 901, 1035, 1251
TaqI	TCGA	2 cut(s)	659, 680
TaqII	GACCGA	1 cut(s)	109
TasI	AATT	6 cut(s)	87, 293, 539, 882, 953, 1222
TatI	WGTACW	2 cut(s)	559, 1174
TfiI	GAWTC	1 cut(s)	172
Tru1I	TTAA	8 cut(s)	292, 296, 689, 893, 992, 1127, 1171, 1256
Tru9I	TTAA	8 cut(s)	292, 296, 689, 893, 992, 1127, 1171, 1256
TscAI	CASTG	4 cut(s)	80, 167, 527, 904
TseI	GCWGC	7 cut(s)	212, 306, 493, 576, 697, 1015, 1156
TspDTI	ATGAA	3 cut(s)	149, 503, 793
TspGWI	ACGGA	1 cut(s)	57
TspRI	CASTG	4 cut(s)	80, 167, 527, 904
Van91I	CCANNNNNTGG	1 cut(s)	247
Vha464I	CTTAAG	1 cut(s)	991
VpaK11BI	GGWCC	3 cut(s)	80, 121, 762
VspI	ATTAAT	1 cut(s)	292
XagI	CCTNNNNNAGG	1 cut(s)	1204
XapI	RAATTY	3 cut(s)	87, 539, 882
XceI	RCATGY	1 cut(s)	1147
XspI	CTAG	1 cut(s)	391

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.