Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0007920

Physical Location & Seq

Genomic Coordinates Forward (+)

69194090 .. 69204827

Gene Structure 10738 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG437300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 4224 bp

ATGGCGAACATTGCAATGACTGGTATACTGGAGAAGATGACGGGGAAGGATAAGGATTATAGATACATGGCAACATCTGATTTGTTGAACGAATTAAACAAAGACAATTTTAAAGCCGATGCTGATCTAGAGATAAAGTTGTCGAATATTATTATTCAGCAACTTGATGATGTTGCCGGCGATGTATCTGGATTGGCTGTCAAATGTCTTGCTCCATTAGTTAAGAAGGTCAGCGAGCCACGAGTCGTGGAGATGACAAATAAACTTTGTGAGAAATTGCTAAAGGAGAAGGATCAACATCGTGACATTGCCAGCATAGCTATGAAGGCTATTGTTGCAGAAGTTTCTACTCAATCACTTGCACAGTCTATTCTTGTGTCTATTTTACCGCAGTTGATTAAAGGAATTACTGCCCCGGGAATGAGTACAGAGATAAAATGTGAATGTCTTGATATCTTATGTGATGTCCTTCATAAGTTTGGCAATCTTATGGCAACCGACCATGAGCTGCTATTAGGTGCTCTCTTGTCTCAGTTGAGTTCCAATCAAGCCAGCGTGAGGAAGAAAACTGTGTCATGCATCGCATCACTTGCTTCAAGCTTGTCAGACGATTTGTTGGCAAAGGCCACTGTTGAAGTTGTTCAGAACTTGAGAAATAAAGGCATGAAGTCTGAAATGACTCGTACAAATATTCAGATGATTGGTGCTTTAAGTCGTGCTGTTGGCTATCGTTTTGGACCCCATCTTGCTGACACTGTCCCGGTGCTAATTAATTATTGCACAAGTGCATCTGAGAATGATGAAGAGCTTCGTGAGTACAGTTTGCAGGTTGGTGCGTTTTCTGTATTGAAAGAACTTGTGGTGGTCTTGCCAGATTGCTTGGCAGATCAAATTGGCTCACTCATTCCAGGAATTGAAAAAGCTTTAAGTGACAAGTCCTCTACCTCCAATTTGAAGATTGAAGCTCTTATATTTACAAGATTGGTGTTGGCTTCACATTCTCCTTCTGTTTTCCATCCTTACATCCAGGCTCTCTCTAGTCCTGTTTTATCTGCTGTGGCAGAGCGTTACTACAAAGTCACAGCTGAAGCACTTAGGGTCTGTGGTGAACTTGTCCGTGTTGTTCGCCCAAATATTGAGGGGATTGGTTTTGATTTCAAACCTTATGTTCAACCAATATATAAGGCCATAATGTCACGCTTGACAAACCAAGATCAAGATCAGGAGGTAAAAGAATGTGCTATATCTTGCATGGGACTACTTGTGTCGACATTTGGTGATAACCTCAATGCTGAATTACCTGTGTGCCTTCCTGTACTTGTTGATCGGATGGGAAATGAGATCACTCGACTTACAGCTGTGAAGGCATTTGCTGTCATTGCTTCTTCCCCATTGCGGATAGACCTGTCTTGTGTTTTGGATCAAGTGATTGCAGAGTTGACTGCATTCTTACGGAAGGCTAATCGGCCTCTAAGGCAGGCAACACTGGGGACCCTGAATTCCCTGATTGTTGCCTATGGCGATAAAATCGGTCCATCAGCTTATGAAGTTATTATTGTTGAACTTGCAACACTGATAAGTGATTCAGACTTGCATATGACGGCCCTTGCCCTGGAACTTTGCTGCACCTTGATGGCCGACAGGTCAAGCCCAGTTGTTGGTTTGGCTGTTAGAAATAAAGTTCTTCCGCAAGCGCTAACATTAATTAAAAGCTCACTGCTACAGGGGCAAGCTCTATTGGCTTTGCAAAACTTCTTTGCTTCCTTGGTGTATTCTGCAAATACAAGTTTTGATGCCTTGCTAGACTCTCTTCTATCAAGTGCTAAACCATCTCCTCAGTCTGGTGGGGTTGCAAAACAAGCTCTATATTCAATAGCTCAATGCGTGGCTGTCCTTTGTCTTGCTGCTGGTGATGAGAAATGTTCATCTACAGTGCAAATGCTTACCGAAATTCTCAAACATGACAGCAGTACAAACTCTGCTAAGCAGCATCTTGCATTGCTATGTCTTGGGGAGATTGGGAGAAGGAAAGATCTAAGCTCTCATGCCCATATTGAGAATATTGTTATCGAGTCATTTCAGTCTCCTTTCGAGGAGATTAAGTCTGCAGCCTCATATGCTCTTGGCAATATTGCAGTTGGTAACCTATTCAAATATTTGCCTTTTATCTTGGACCAGATTGATAATCAGCAGAAAAAACAGTATCTCTTGCTTCATTCTTTGAAAGAGGTCATAGTAAGGCAATCTGTAGATAAAGCTGAGTTTCAGGACAGTAGTGTTGAAAAAATACTAAATTTACTTTTTAATCACTGTGAAAGTGAGGAAGAGGGTGTTCGCAATGTGGTCGCTGAATGTCTGGGTAAAATTGCGCTTATTGAACCTGCAAAACTGGTTCCTGCACTTAAGGTGCGGACAACCAGCCCAGCTGCTTTCACAAGAGCTACGGTTGTCATTGCAGTCAAGTATTCAGTAGTGGAGAGGCCAGAGAAGATAGACGAGATCTTATATCCTGAAATCTCATCATTCCTGATGCTTATTAAGGATCATGACCGGCATGTCAGGCGTGCTGCTGTGTTGGCTTTAAGTACATTCGCCCATAATAAGCCAAACCTCATCAAGGGGCTTCTGCCAGAATTGTTGCCACTTCTTTATGATCAGACTGTTATTAAGAAAGAATTGATCAGGACAGTTGATCTTGGTCCTTTTAAGCACATTGTGGATGATGGGCTTGAGTTAAGGAAGGCTGCATTTGAATGTGTGGACACATTACTAGATAGTTGTCTTGACCAAGTGAATCCTTCATCATTTATTGTTCCTTACCTCAAATCTGGTCTAGATGATCATTATGATGTTAAGATGCCTTGCCATCTTATCCTCTCAAAGCTTGCAGACAAGTGTCCATCAGCTGTACTGGCAGTATTGGATTCATTGGTGGATCATCTCCAAAAAACCATCAACTTTAAGCCAAAGCAAGATGCTGTAAAGCAAGAAGTAGATCGCAATGAAGACATGATCCGCAGCGCTCTAAGAACAATTGCATCCTTGCATCGTATAAGCGGTGGAGATTGCAGCCTTAAGTTCAAGAACCTTACGAATGAAATATCAAAAACTCCTGCACTCTGGGACAAGTTCTACACAGTTGGCAATGCTACTGTTCCAATCGGTAACCTGGTTGCTACTTTTATTCCCTCCTATTTTGTTGTTGCTATGATTTACGGGTACAGGCTTATTATTGGAAGAACTTTATGCGAAAGCGACCGTGTCAGTGGAATGCTCCTTATGACCAACATGTTCCCTTCACATGAAGAAAAGTTGGATGATGAGTATAGCTTCGAGGGACCAGAAGAAAAGCTAGAGATCACAGAAGCAATACACTTTGAGTTGCCACCGGAAAGTAGCAGGAGAAGCACTTTTAGCAGCAGCACTAGCAGGGTGGATAACATATGGACGAATACAAAGGGATGGTTAGGGGGGGAATCCATAACTAGCTTATTAAGACGGAACAGAGCCAAGAAGAAAGAGGATGTTCGACTTCAAACAGCAAGCATTCATGCTGCCCTTTCCGTCACACGCTTGGCTGCAGCAATCGCAAGTGTTGCTGCAGCCAAGAGCAGCATAGACTCAGAATCAGAATCAGCACAAGATATTGGCAATCAAGGTACGGTACTTCAATCATGGAACAACGTAGACGACATTTTTGCTTCTGCAGCAGCTCTGGTTACCACAGTTTGTGCTGAAGCTGCTGAGTCATTGGGGGCGCAGACAATCGATGTTTCTTCTGCCATTAACTCAGGCTGGGCTACCCAAACAACTGGCGACATGATCACACTCACAGCTGATGCTGCAACATGTTTAAGAGGAGTTGCAGCACTCAAAGCAAGAGCCAAGGCCGATGCGTATTTTCCAAGAACTCAAACTTTTCCTCAAGTAAAAGCAGAGCTATCTGTCGTCACTCCTTCTGGAAGCCAAATATACGGCTGGGCCTCCATATATTCAAAGCATAGTCAGCTCATTTTGAGCCTCCAGAAGAAGCATTTGGGATTCTTAGCCACAACAAAGGAATACAAGATTTTGCGTGTGGAGGAGGGAACAAGGGAAGCTCAGGGAAACCTTTCAATCAGCCTAAGGAGCAACAGTGGATACATCAAGCTCTTATTCAAAGATGAAAACCAATCTTTAGTCTGGACGACAAGCATTTCTAGTCTCTTACAGTTGCATTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0006464 GO:0006807 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009733 GO:0009791 GO:0009987 GO:0010033 GO:0010051 GO:0010228 GO:0010265 GO:0016020 GO:0016043 GO:0016567 GO:0019538 GO:0022414 GO:0022607 GO:0030312 GO:0032446 GO:0032501 GO:0032502 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061458 GO:0065003 GO:0070647 GO:0071704 GO:0071840 GO:0071944 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TIP120

Protein Analysis

1407

Amino Acids

153.8

Weight (kDa)

6.15

Isoelectric Point (pI)

45.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_CAND1	PF25782	293 - 418	9.4e-48	CAND1-like, TPR repeats
TIP120	PF08623	871 - 1033	2.3e-55	TATA-binding protein interacting (TIP20)
Auxin_canalis	PF05703	1143 - 1298	3.2e-36	Auxin canalisation
PH_2	PF08458	1313 - 1405	9.8e-07	Plant pleckstrin homology-like region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007920)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G02560 AT2G02560
fragaria_vesca	FvH4_7g33400 FvH4_7g33400
malus_domestica	MD01G1232300.v1.1 MD07G1304100.v1.1
prunus_persica	Prupe.2G322700_v2.0.a1 Prupe.2G322700_v2.0.a1 Prupe.2G322700_v2.0.a1
pyrus_communis	pycom01g24070 pycom07g27710
rosa_chinensis	RchiOBHm_Chr1g0383371
rosa_laevigata	RLG00000026107
rosa_multiflora	Rmu_co8130632.1_g000001 Rmu_sc0007173.1_g000011 Rmu_sc0019557.1_g000001 Rmu_sc0020036.1_g000001
rosa_roxburghii	Rroxscaffold_4G00277350
rosa_rugosa	Rorug01G0441000
rosa_samantha	Rh1AG466900 Rh1BG424200 Rh1CG437300 Rh1DG456900
rosa_wichuraiana	Rw1G040570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	2555
Acc36I	ACCTGC	2 cut(s)	817, 2389
AccB7I	CCANNNNNTGG	1 cut(s)	1658
AccI	GTMKAC	3 cut(s)	25, 1268, 3687
AciI	CCGC	6 cut(s)	389, 1396, 1688, 2410, 3016, 3057
AclWI	GGATC	5 cut(s)	300, 1428, 2550, 2943, 3007
AcoI	YGGCCR	1 cut(s)	1635
AcsI	RAATTY	3 cut(s)	1498, 1950, 2293
AcuI	CTGAAG	2 cut(s)	1107, 3756
AdeI	CACNNNGTG	1 cut(s)	2716
AfeI	AGCGCT	2 cut(s)	1695, 3022
AfiI	CCNNNNNNNGG	6 cut(s)	558, 1395, 1612, 1658, 1841, 2617
AflII	CTTAAG	2 cut(s)	2402, 3074
AflIII	ACRYGT	2 cut(s)	3288, 3848
AjnI	CCWGG	4 cut(s)	907, 1026, 1611, 3168
AjuI	GAANNNNNNNTTGG	2 cut(s)	4019, 4051
Alw21I	GWGCWC	1 cut(s)	523
Alw26I	GTCTC	3 cut(s)	534, 2088, 4208
AlwI	GGATC	5 cut(s)	300, 1428, 2550, 2943, 3007
Ama87I	CYCGRG	1 cut(s)	415
Aor51HI	AGCGCT	2 cut(s)	1695, 3022
AoxI	GGCC	8 cut(s)	624, 1185, 1466, 1602, 1635, 2480, 3888, 3981
ApoI	RAATTY	3 cut(s)	1498, 1950, 2293
ArsI	GACNNNNNNTTYG	2 cut(s)	3680, 3712
AseI	ATTAAT	2 cut(s)	771, 1703
Asp700I	GAANNNNTTC	3 cut(s)	639, 807, 4111
AspLEI	GCGC	4 cut(s)	1696, 2371, 3023, 3760
AspS9I	GGNCC	8 cut(s)	737, 1491, 1532, 1603, 2173, 2699, 3338, 3981
AsuC2I	CCSGG	3 cut(s)	416, 417, 761
AsuHPI	GGTGA	3 cut(s)	1118, 1289, 1922
AvaI	CYCGRG	1 cut(s)	415
AvaII	GGWCC	6 cut(s)	737, 1491, 1532, 2173, 2699, 3338
AxyI	CCTNAGG	1 cut(s)	4124
BauI	CACGAG	1 cut(s)	240
BbsI	GAAGAC	1 cut(s)	3012
Bbv12I	GWGCWC	1 cut(s)	523
BceAI	ACGGC	2 cut(s)	1617, 3991
BcgI	CGANNNNNNTGC	4 cut(s)	2326, 2360, 3680, 3714
BciT130I	CCWGG	4 cut(s)	909, 1028, 1613, 3170
BciVI	GTATCC	1 cut(s)	4133
BclI	TGATCA	4 cut(s)	2653, 2679, 2839, 3822
BcnI	CCSGG	3 cut(s)	416, 417, 761
BcoDI	GTCTC	3 cut(s)	534, 2088, 4208
BfaI	CTAG	9 cut(s)	128, 1038, 1802, 2771, 2834, 3353, 3426, 3486, 4200
BfmI	CTRYAG	7 cut(s)	1721, 1929, 2106, 2247, 3579, 3600, 3705
BfoI	RGCGCY	2 cut(s)	1697, 3024
BfrI	CTTAAG	2 cut(s)	2402, 3074
BfuAI	ACCTGC	2 cut(s)	817, 2389
BfuI	GTATCC	1 cut(s)	4133
BglI	GCCNNNNNGGC	1 cut(s)	1474
BglII	AGATCT	2 cut(s)	2032, 2499
BlpI	GCTNAGC	1 cut(s)	1983
Bme1390I	CCNGG	7 cut(s)	416, 417, 761, 909, 1028, 1613, 3170
Bme18I	GGWCC	6 cut(s)	737, 1491, 1532, 2173, 2699, 3338
BmeT110I	CYCGRG	1 cut(s)	415
BmgT120I	GGNCC	8 cut(s)	737, 1491, 1532, 1603, 2173, 2699, 3338, 3981
BmiI	GGNNCC	5 cut(s)	739, 1492, 1493, 2394, 3339
BmrFI	CCNGG	7 cut(s)	416, 417, 761, 909, 1028, 1613, 3170
BmrI	ACTGGG	2 cut(s)	1496, 1646
BmuI	ACTGGG	2 cut(s)	1496, 1646
BoxI	GACNNNNGTC	1 cut(s)	2895
BpiI	GAAGAC	1 cut(s)	3012
BpmI	CTGGAG	2 cut(s)	50, 4007
Bpu10I	CCTNAGC	1 cut(s)	4101
Bpu1102I	GCTNAGC	1 cut(s)	1983
BpuEI	CTTGAG	3 cut(s)	670, 2750, 3909
BpuMI	CCSGG	3 cut(s)	416, 417, 761
Bsa29I	ATCGAT	1 cut(s)	3768
BsaBI	GATNNNNATC	3 cut(s)	123, 297, 1218
BsaJI	CCNNGG	5 cut(s)	414, 415, 1611, 1764, 3885
BsaWI	WCCGGW	1 cut(s)	3388
BsaXI	ACNNNNNCTCC	4 cut(s)	2087, 2117, 4120, 4150
Bsc4I	CCNNNNNNNGG	6 cut(s)	558, 1395, 1612, 1658, 1841, 2617
Bse118I	RCCGGY	2 cut(s)	176, 2550
Bse1I	ACTGG	7 cut(s)	25, 33, 1491, 1652, 2394, 2916, 3817
Bse21I	CCTNAGG	1 cut(s)	4124
Bse8I	GATNNNNATC	3 cut(s)	123, 297, 1218
BseBI	CCWGG	4 cut(s)	909, 1028, 1613, 3170
BseCI	ATCGAT	1 cut(s)	3768
BseDI	CCNNGG	5 cut(s)	414, 415, 1611, 1764, 3885
BseGI	GGATG	8 cut(s)	1015, 1023, 1335, 2725, 3038, 3322, 3467, 3529
BseJI	GATNNNNATC	3 cut(s)	123, 297, 1218
BseLI	CCNNNNNNNGG	6 cut(s)	558, 1395, 1612, 1658, 1841, 2617
BseMII	CTCAG	8 cut(s)	545, 783, 1850, 2250, 3636, 3735, 3804, 4115
BseNI	ACTGG	7 cut(s)	25, 33, 1491, 1652, 2394, 2916, 3817
BseRI	GAGGAG	4 cut(s)	1824, 2108, 3873, 4097
BseYI	CCCAGC	3 cut(s)	2422, 3795, 3978
BsgI	GTGCAG	3 cut(s)	1609, 2382, 3099
Bsh1285I	CGRYCG	1 cut(s)	3259
BshFI	GGCC	8 cut(s)	626, 1187, 1468, 1604, 1637, 2482, 3890, 3983
BshVI	ATCGAT	1 cut(s)	3768
BsiEI	CGRYCG	1 cut(s)	3259
BsiHKAI	GWGCWC	1 cut(s)	523
BsiHKCI	CYCGRG	1 cut(s)	415
BsiSI	CCGG	5 cut(s)	177, 416, 761, 2551, 3389
BslFI	GGGAC	5 cut(s)	743, 1269, 1504, 3137, 3351
BslI	CCNNNNNNNGG	6 cut(s)	558, 1395, 1612, 1658, 1841, 2617
BsmAI	GTCTC	3 cut(s)	534, 2088, 4208
BsmFI	GGGAC	5 cut(s)	743, 1269, 1504, 3137, 3351
BsmI	GAATGC	3 cut(s)	1445, 3276, 3546
BsnI	GGCC	8 cut(s)	626, 1187, 1468, 1604, 1637, 2482, 3890, 3983
BsoBI	CYCGRG	1 cut(s)	415
Bsp1286I	GDGCHC	1 cut(s)	523
Bsp1720I	GCTNAGC	1 cut(s)	1983
BspACI	CCGC	6 cut(s)	389, 1396, 1688, 2410, 3016, 3057
BspANI	GGCC	8 cut(s)	626, 1187, 1468, 1604, 1637, 2482, 3890, 3983
BspCNI	CTCAG	8 cut(s)	544, 784, 1849, 2251, 3635, 3736, 3803, 4114
BspDI	ATCGAT	1 cut(s)	3768
BspHI	TCATGA	1 cut(s)	2545
BspLI	GGNNCC	5 cut(s)	739, 1492, 1493, 2394, 3339
BspMAI	CTGCAG	4 cut(s)	2110, 3583, 3604, 3709
BspMI	ACCTGC	2 cut(s)	817, 2389
BspPI	GGATC	5 cut(s)	300, 1428, 2550, 2943, 3007
BspQI	GCTCTTC	1 cut(s)	798
BspTI	CTTAAG	2 cut(s)	2402, 3074
BsrFI	RCCGGY	2 cut(s)	176, 2550
BsrI	ACTGG	7 cut(s)	25, 33, 1491, 1652, 2394, 2916, 3817
BssAI	RCCGGY	2 cut(s)	176, 2550
BssECI	CCNNGG	5 cut(s)	414, 415, 1611, 1764, 3885
BssNAI	GTATAC	1 cut(s)	26
BssSI	CACGAG	1 cut(s)	240
BssT1I	CCWWGG	2 cut(s)	1764, 3885
Bst1107I	GTATAC	1 cut(s)	26
Bst2BI	CACGAG	1 cut(s)	240
Bst2UI	CCWGG	4 cut(s)	909, 1028, 1613, 3170
Bst6I	CTCTTC	3 cut(s)	798, 1815, 2319
BstAFI	CTTAAG	2 cut(s)	2402, 3074
BstAPI	GCANNNNNTGC	2 cut(s)	590, 3596
BstEII	GGTNACC	3 cut(s)	2141, 3164, 3718
BstENI	CCTNNNNNAGG	1 cut(s)	2615
BstF5I	GGATG	8 cut(s)	1015, 1023, 1335, 2725, 3038, 3322, 3467, 3529
BstH2I	RGCGCY	2 cut(s)	1697, 3024
BstHHI	GCGC	4 cut(s)	1696, 2371, 3023, 3760
BstMAI	GTCTC	3 cut(s)	534, 2088, 4208
BstMCI	CGRYCG	1 cut(s)	3259
BstNI	CCWGG	4 cut(s)	909, 1028, 1613, 3170
BstNSI	RCATGY	3 cut(s)	2558, 3292, 3852
BstPAI	GACNNNNGTC	1 cut(s)	2895
BstPI	GGTNACC	3 cut(s)	2141, 3164, 3718
BstSCI	CCNGG	7 cut(s)	414, 415, 759, 907, 1026, 1611, 3168
BstSFI	CTRYAG	7 cut(s)	1721, 1929, 2106, 2247, 3579, 3600, 3705
BstV2I	GAAGAC	1 cut(s)	3012
BstX2I	RGATCY	2 cut(s)	2032, 2499
BstXI	CCANNNNNNTGG	1 cut(s)	3812
BstYI	RGATCY	2 cut(s)	2032, 2499
BstZ17I	GTATAC	1 cut(s)	26
Bsu15I	ATCGAT	1 cut(s)	3768
Bsu36I	CCTNAGG	1 cut(s)	4124
BsuI	GTATCC	1 cut(s)	4133
BsuRI	GGCC	8 cut(s)	626, 1187, 1468, 1604, 1637, 2482, 3890, 3983
BsuTUI	ATCGAT	1 cut(s)	3768
BtgZI	GCGATG	2 cut(s)	195, 565
BtsCI	GGATG	8 cut(s)	1015, 1023, 1335, 2725, 3038, 3322, 3467, 3529
BtsI	GCAGTG	1 cut(s)	1715
BtsIMutI	CAGTG	9 cut(s)	627, 753, 1484, 1571, 1715, 1938, 2308, 3271, 4141
BveI	ACCTGC	2 cut(s)	817, 2389
CciI	TCATGA	1 cut(s)	2545
CfoI	GCGC	4 cut(s)	1696, 2371, 3023, 3760
Cfr10I	RCCGGY	2 cut(s)	176, 2550
Cfr13I	GGNCC	8 cut(s)	737, 1491, 1532, 1603, 2173, 2699, 3338, 3981
Cfr9I	CCCGGG	1 cut(s)	415
ClaI	ATCGAT	1 cut(s)	3768
CsiI	ACCWGGT	1 cut(s)	3168
DraI	TTTAAA	1 cut(s)	112
DraIII	CACNNNGTG	1 cut(s)	2716
DrdI	GACNNNNNNGTC	1 cut(s)	2555
DseDI	GACNNNNNNGTC	1 cut(s)	2555
EaeI	YGGCCR	1 cut(s)	1635
Eam1104I	CTCTTC	3 cut(s)	798, 1815, 2319
EarI	CTCTTC	3 cut(s)	798, 1815, 2319
Eco130I	CCWWGG	2 cut(s)	1764, 3885
Eco32I	GATATC	1 cut(s)	454
Eco47I	GGWCC	6 cut(s)	737, 1491, 1532, 2173, 2699, 3338
Eco47III	AGCGCT	2 cut(s)	1695, 3022
Eco57I	CTGAAG	2 cut(s)	1107, 3756
Eco81I	CCTNAGG	1 cut(s)	4124
Eco88I	CYCGRG	1 cut(s)	415
Eco91I	GGTNACC	3 cut(s)	2141, 3164, 3718
EcoNI	CCTNNNNNAGG	1 cut(s)	2615
EcoO109I	RGGNCCY	1 cut(s)	1491
EcoO65I	GGTNACC	3 cut(s)	2141, 3164, 3718
EcoRI	GAATTC	1 cut(s)	1498
EcoRII	CCWGG	4 cut(s)	907, 1026, 1611, 3168
EcoRV	GATATC	1 cut(s)	454
EcoT14I	CCWWGG	2 cut(s)	1764, 3885
EcoT22I	ATGCAT	1 cut(s)	581
ErhI	CCWWGG	2 cut(s)	1764, 3885
FaqI	GGGAC	5 cut(s)	743, 1269, 1504, 3137, 3351
FauNDI	CATATG	3 cut(s)	1596, 2116, 3443
FbaI	TGATCA	4 cut(s)	2653, 2679, 2839, 3822
FblI	GTMKAC	3 cut(s)	25, 1268, 3687
FokI	GGATG	8 cut(s)	1002, 1010, 1342, 2732, 3025, 3329, 3474, 3536
FspBI	CTAG	9 cut(s)	128, 1038, 1802, 2771, 2834, 3353, 3426, 3486, 4200
GlaI	GCGC	4 cut(s)	1695, 2370, 3022, 3759
GsaI	CCCAGC	3 cut(s)	2426, 3799, 3982
GsuI	CTGGAG	2 cut(s)	50, 4007
HaeII	RGCGCY	2 cut(s)	1697, 3024
HaeIII	GGCC	8 cut(s)	626, 1187, 1468, 1604, 1637, 2482, 3890, 3983
HapII	CCGG	5 cut(s)	177, 416, 761, 2551, 3389
HhaI	GCGC	4 cut(s)	1696, 2371, 3023, 3760
Hin6I	GCGC	4 cut(s)	1694, 2369, 3021, 3758
HinP1I	GCGC	4 cut(s)	1694, 2369, 3021, 3758
HincII	GTYRAC	2 cut(s)	1269, 1440
HindII	GTYRAC	2 cut(s)	1269, 1440
HindIII	AAGCTT	3 cut(s)	598, 921, 2882
HpaII	CCGG	5 cut(s)	177, 416, 761, 2551, 3389
HphI	GGTGA	3 cut(s)	1118, 1289, 1922
Hpy166II	GTNNAC	6 cut(s)	26, 1109, 1269, 1440, 2761, 3688
Hpy8I	GTNNAC	6 cut(s)	26, 1109, 1269, 1440, 2761, 3688
HpyCH4IV	ACGT	1 cut(s)	3684
HpySE526I	ACGT	1 cut(s)	3684
HspAI	GCGC	4 cut(s)	1694, 2369, 3021, 3758
KflI	GGGWCCC	1 cut(s)	1491
KroI	GCCGGC	1 cut(s)	176
KroNI	GCCGGC	1 cut(s)	178
Ksp22I	TGATCA	4 cut(s)	2653, 2679, 2839, 3822
LguI	GCTCTTC	1 cut(s)	798
LmnI	GCTCC	3 cut(s)	217, 3279, 4128
MabI	ACCWGGT	1 cut(s)	3168
MaeI	CTAG	9 cut(s)	128, 1038, 1802, 2771, 2834, 3353, 3426, 3486, 4200
MaeII	ACGT	1 cut(s)	3684
MfeI	CAATTG	1 cut(s)	3033
MflI	RGATCY	2 cut(s)	2032, 2499
MhlI	GDGCHC	1 cut(s)	523
MlyI	GAGTC	6 cut(s)	252, 673, 1799, 2081, 3614, 3755
MmeI	TCCRAC	1 cut(s)	3294
Mph1103I	ATGCAT	1 cut(s)	581
MroNI	GCCGGC	1 cut(s)	176
MroXI	GAANNNNTTC	3 cut(s)	639, 807, 4111
MslI	CAYNNNNRTG	6 cut(s)	14, 320, 1631, 2002, 2752, 2847
MspA1I	CMGCKG	5 cut(s)	1085, 1358, 2426, 2906, 3836
MspCI	CTTAAG	2 cut(s)	2402, 3074
MspI	CCGG	5 cut(s)	177, 416, 761, 2551, 3389
MspR9I	CCNGG	7 cut(s)	416, 417, 761, 909, 1028, 1613, 3170
MunI	CAATTG	1 cut(s)	3033
Mva1269I	GAATGC	3 cut(s)	1445, 3276, 3546
MvaI	CCWGG	4 cut(s)	909, 1028, 1613, 3170
NaeI	GCCGGC	1 cut(s)	178
NciI	CCSGG	3 cut(s)	416, 417, 761
NdeI	CATATG	3 cut(s)	1596, 2116, 3443
NgoMIV	GCCGGC	1 cut(s)	176
NlaIV	GGNNCC	5 cut(s)	739, 1492, 1493, 2394, 3339
NmuCI	GTSAC	6 cut(s)	302, 929, 1078, 1194, 3565, 3949
NsiI	ATGCAT	1 cut(s)	581
NspI	RCATGY	3 cut(s)	2558, 3292, 3852
PacI	TTAATTAA	1 cut(s)	1707
PagI	TCATGA	1 cut(s)	2545
PciI	ACATGT	2 cut(s)	3288, 3848
PciSI	GCTCTTC	1 cut(s)	798
PctI	GAATGC	3 cut(s)	1445, 3276, 3546
PdiI	GCCGGC	1 cut(s)	178
PdmI	GAANNNNTTC	3 cut(s)	639, 807, 4111
PfeI	GAWTC	7 cut(s)	1583, 2794, 2924, 3476, 3626, 3632, 4041
PflFI	GACNNNGTC	2 cut(s)	755, 3260
PflMI	CCANNNNNTGG	1 cut(s)	1658
PfoI	TCCNGGA	1 cut(s)	907
PleI	GAGTC	6 cut(s)	251, 673, 1799, 2080, 3614, 3754
PpsI	GAGTC	6 cut(s)	251, 673, 1799, 2080, 3614, 3754
PpuMI	RGGWCCY	1 cut(s)	1491
PscI	ACATGT	2 cut(s)	3288, 3848
PshAI	GACNNNNGTC	1 cut(s)	2895
PshBI	ATTAAT	2 cut(s)	771, 1703
Psp5II	RGGWCCY	1 cut(s)	1491
Psp6I	CCWGG	4 cut(s)	907, 1026, 1611, 3168
PspEI	GGTNACC	3 cut(s)	2141, 3164, 3718
PspFI	CCCAGC	3 cut(s)	2422, 3795, 3978
PspGI	CCWGG	4 cut(s)	907, 1026, 1611, 3168
PspN4I	GGNNCC	5 cut(s)	739, 1492, 1493, 2394, 3339
PspPI	GGNCC	8 cut(s)	737, 1491, 1532, 1603, 2173, 2699, 3338, 3981
PspPPI	RGGWCCY	1 cut(s)	1491
PstI	CTGCAG	4 cut(s)	2110, 3583, 3604, 3709
PsuI	RGATCY	2 cut(s)	2032, 2499
PsyI	GACNNNGTC	2 cut(s)	755, 3260
PvuII	CAGCTG	5 cut(s)	1085, 1358, 2426, 2906, 3836
RseI	CAYNNNNRTG	6 cut(s)	14, 320, 1631, 2002, 2752, 2847
SalI	GTCGAC	1 cut(s)	1267
SapI	GCTCTTC	1 cut(s)	798
Sau96I	GGNCC	8 cut(s)	737, 1491, 1532, 1603, 2173, 2699, 3338, 3981
SchI	GAGTC	6 cut(s)	252, 673, 1799, 2081, 3614, 3755
ScrFI	CCNGG	7 cut(s)	416, 417, 761, 909, 1028, 1613, 3170
SduI	GDGCHC	1 cut(s)	523
SexAI	ACCWGGT	1 cut(s)	3168
SfcI	CTRYAG	7 cut(s)	1721, 1929, 2106, 2247, 3579, 3600, 3705
SinI	GGWCC	6 cut(s)	737, 1491, 1532, 2173, 2699, 3338
SmaI	CCCGGG	1 cut(s)	417
SmiMI	CAYNNNNRTG	6 cut(s)	14, 320, 1631, 2002, 2752, 2847
SmlI	CTYRAG	5 cut(s)	649, 2402, 2729, 3074, 3924
SmoI	CTYRAG	5 cut(s)	649, 2402, 2729, 3074, 3924
SsiI	CCGC	6 cut(s)	389, 1396, 1688, 2410, 3016, 3057
SspI	AATATT	6 cut(s)	148, 691, 1135, 2062, 2131, 2156
SspMI	CTAG	9 cut(s)	128, 1038, 1802, 2771, 2834, 3353, 3426, 3486, 4200
StyD4I	CCNGG	7 cut(s)	414, 415, 759, 907, 1026, 1611, 3168
StyI	CCWWGG	2 cut(s)	1764, 3885
TaiI	ACGT	1 cut(s)	3687
TaqI	TCGA	8 cut(s)	143, 1268, 1348, 2070, 2091, 3333, 3529, 3768
TaqII	GACCGA	1 cut(s)	1520
TatI	WGTACW	6 cut(s)	425, 816, 1315, 1970, 2585, 2908
TfiI	GAWTC	7 cut(s)	1583, 2794, 2924, 3476, 3626, 3632, 4041
TscAI	CASTG	9 cut(s)	634, 760, 1491, 1578, 1722, 1938, 2315, 3271, 4141
TseFI	GTSAC	6 cut(s)	302, 929, 1078, 1194, 3565, 3949
Tsp45I	GTSAC	6 cut(s)	302, 929, 1078, 1194, 3565, 3949
TspGWI	ACGGA	4 cut(s)	1106, 1468, 3514, 3553
TspMI	CCCGGG	1 cut(s)	415
TspRI	CASTG	9 cut(s)	634, 760, 1491, 1578, 1722, 1938, 2315, 3271, 4141
Tth111I	GACNNNGTC	2 cut(s)	755, 3260
Van91I	CCANNNNNTGG	1 cut(s)	1658
Vha464I	CTTAAG	2 cut(s)	2402, 3074
VpaK11BI	GGWCC	6 cut(s)	737, 1491, 1532, 2173, 2699, 3338
VspI	ATTAAT	2 cut(s)	771, 1703
XagI	CCTNNNNNAGG	1 cut(s)	2615
XapI	RAATTY	3 cut(s)	1498, 1950, 2293
XbaI	TCTAGA	2 cut(s)	127, 2833
XceI	RCATGY	3 cut(s)	2558, 3292, 3852
XmaI	CCCGGG	1 cut(s)	415
XmiI	GTMKAC	3 cut(s)	25, 1268, 3687
XmnI	GAANNNNTTC	3 cut(s)	639, 807, 4111
XspI	CTAG	9 cut(s)	128, 1038, 1802, 2771, 2834, 3353, 3426, 3486, 4200
Zsp2I	ATGCAT	1 cut(s)	581

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.