Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0019557.1

Orthogroup ID

OG0007920

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 576

Gene Structure 576 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0019557.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 368 bp

gtgttttggatcaagtgattgcagagttgactgcattcttacggaaggctaatcggcctctaaggcaggcaacactggggaccctgaattccctgattgttgcctatggcgataaaatcggtccatcagcttatgaagttattattgttgaacttgcaacactgataagtgattcagacttgcatatgacggcccttgccctggaactttgctgcaccttgatggccgacaggtcaagcccagttgttggtttggctgttagaaataaagttcttccgcaagcgctaacattaattaaaagctcactgctacaggggcaagctctattggtaattgtttatttcttatttgtgtttattttgatatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0006464 GO:0006807 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009733 GO:0009791 GO:0009987 GO:0010033 GO:0010051 GO:0010228 GO:0010265 GO:0016020 GO:0016043 GO:0016567 GO:0019538 GO:0022414 GO:0022607 GO:0030312 GO:0032446 GO:0032501 GO:0032502 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061458 GO:0065003 GO:0070647 GO:0071704 GO:0071840 GO:0071944 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TIP120

Protein Analysis

121

Amino Acids

13.11

Weight (kDa)

6.74

Isoelectric Point (pI)

35.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007920)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G02560 AT2G02560
fragaria_vesca	FvH4_7g33400 FvH4_7g33400
malus_domestica	MD01G1232300.v1.1 MD07G1304100.v1.1
prunus_persica	Prupe.2G322700_v2.0.a1 Prupe.2G322700_v2.0.a1 Prupe.2G322700_v2.0.a1
pyrus_communis	pycom01g24070 pycom07g27710
rosa_chinensis	RchiOBHm_Chr1g0383371
rosa_laevigata	RLG00000026107
rosa_multiflora	Rmu_co8130632.1_g000001 Rmu_sc0007173.1_g000011 Rmu_sc0019557.1_g000001 Rmu_sc0020036.1_g000001
rosa_roxburghii	Rroxscaffold_4G00277350
rosa_rugosa	Rorug01G0441000
rosa_samantha	Rh1AG466900 Rh1BG424200 Rh1CG437300 Rh1DG456900
rosa_wichuraiana	Rw1G040570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	247
AciI	CCGC	1 cut(s)	277
AclWI	GGATC	1 cut(s)	17
AcoI	YGGCCR	1 cut(s)	224
AcsI	RAATTY	1 cut(s)	87
AfeI	AGCGCT	1 cut(s)	284
AfiI	CCNNNNNNNGG	2 cut(s)	201, 247
AgsI	TTSAA	1 cut(s)	151
AjnI	CCWGG	1 cut(s)	200
AluBI	AGCT	3 cut(s)	130, 302, 322
AluI	AGCT	3 cut(s)	130, 302, 322
AlwI	GGATC	1 cut(s)	17
Aor51HI	AGCGCT	1 cut(s)	284
AoxI	GGCC	3 cut(s)	55, 191, 224
ApeKI	GCWGC	1 cut(s)	212
ApoI	RAATTY	1 cut(s)	87
AseI	ATTAAT	1 cut(s)	292
AspLEI	GCGC	1 cut(s)	285
AspS9I	GGNCC	3 cut(s)	80, 121, 192
AvaII	GGWCC	2 cut(s)	80, 121
BbvI	GCAGC	1 cut(s)	199
BccI	CCATC	2 cut(s)	132, 216
BceAI	ACGGC	1 cut(s)	206
BciT130I	CCWGG	1 cut(s)	202
BfmI	CTRYAG	1 cut(s)	310
BfoI	RGCGCY	1 cut(s)	286
BglI	GCCNNNNNGGC	1 cut(s)	63
BisI	GCNGC	1 cut(s)	213
BlsI	GCNGC	1 cut(s)	214
Bme1390I	CCNGG	1 cut(s)	202
Bme18I	GGWCC	2 cut(s)	80, 121
BmgT120I	GGNCC	3 cut(s)	80, 121, 192
BmiI	GGNNCC	2 cut(s)	81, 82
BmrFI	CCNGG	1 cut(s)	202
BmrI	ACTGGG	2 cut(s)	85, 235
BmuI	ACTGGG	2 cut(s)	85, 235
BsaJI	CCNNGG	1 cut(s)	200
Bsc4I	CCNNNNNNNGG	2 cut(s)	201, 247
Bse1I	ACTGG	2 cut(s)	80, 241
BseBI	CCWGG	1 cut(s)	202
BseDI	CCNNGG	1 cut(s)	200
BseLI	CCNNNNNNNGG	2 cut(s)	201, 247
BseNI	ACTGG	2 cut(s)	80, 241
BseXI	GCAGC	1 cut(s)	199
BsgI	GTGCAG	1 cut(s)	198
BshFI	GGCC	3 cut(s)	57, 193, 226
BslFI	GGGAC	1 cut(s)	93
BslI	CCNNNNNNNGG	2 cut(s)	201, 247
BsmFI	GGGAC	1 cut(s)	93
BsmI	GAATGC	1 cut(s)	34
BsnI	GGCC	3 cut(s)	57, 193, 226
Bsp143I	GATC	1 cut(s)	9
BspACI	CCGC	1 cut(s)	277
BspANI	GGCC	3 cut(s)	57, 193, 226
BspLI	GGNNCC	2 cut(s)	81, 82
BspPI	GGATC	1 cut(s)	17
BsrI	ACTGG	2 cut(s)	80, 241
BssECI	CCNNGG	1 cut(s)	200
BssMI	GATC	1 cut(s)	9
Bst2UI	CCWGG	1 cut(s)	202
BstC8I	GCNNGC	3 cut(s)	68, 281, 320
BstDEI	CTNAG	1 cut(s)	61
BstH2I	RGCGCY	1 cut(s)	286
BstHHI	GCGC	1 cut(s)	285
BstKTI	GATC	1 cut(s)	12
BstMBI	GATC	1 cut(s)	9
BstMWI	GCNNNNNNNGC	2 cut(s)	63, 315
BstNI	CCWGG	1 cut(s)	202
BstSCI	CCNGG	1 cut(s)	200
BstSFI	CTRYAG	1 cut(s)	310
BstV1I	GCAGC	1 cut(s)	199
BsuRI	GGCC	3 cut(s)	57, 193, 226
BtsI	GCAGTG	1 cut(s)	304
BtsIMutI	CAGTG	3 cut(s)	73, 160, 304
Cac8I	GCNNGC	3 cut(s)	68, 281, 320
CfoI	GCGC	1 cut(s)	285
Cfr13I	GGNCC	3 cut(s)	80, 121, 192
CviJI	RGCY	9 cut(s)	49, 57, 130, 193, 226, 239, 256, 302, 322
CviKI_1	RGCY	9 cut(s)	49, 57, 130, 193, 226, 239, 256, 302, 322
DdeI	CTNAG	1 cut(s)	61
DpnI	GATC	1 cut(s)	11
DpnII	GATC	1 cut(s)	9
EaeI	YGGCCR	1 cut(s)	224
Eco47I	GGWCC	2 cut(s)	80, 121
Eco47III	AGCGCT	1 cut(s)	284
EcoO109I	RGGNCCY	1 cut(s)	80
EcoRI	GAATTC	1 cut(s)	87
EcoRII	CCWGG	1 cut(s)	200
FaiI	YATR	5 cut(s)	107, 134, 185, 187, 366
FaqI	GGGAC	1 cut(s)	93
FauNDI	CATATG	1 cut(s)	185
Fnu4HI	GCNGC	1 cut(s)	213
Fsp4HI	GCNGC	1 cut(s)	213
GlaI	GCGC	1 cut(s)	284
GluI	GCNGC	1 cut(s)	213
HaeII	RGCGCY	1 cut(s)	286
HaeIII	GGCC	3 cut(s)	57, 193, 226
HhaI	GCGC	1 cut(s)	285
Hin6I	GCGC	1 cut(s)	283
HinP1I	GCGC	1 cut(s)	283
HincII	GTYRAC	1 cut(s)	29
HindII	GTYRAC	1 cut(s)	29
HinfI	GANTC	1 cut(s)	172
Hpy166II	GTNNAC	1 cut(s)	29
Hpy188I	TCNGA	1 cut(s)	177
Hpy8I	GTNNAC	1 cut(s)	29
HpyAV	CCTTC	1 cut(s)	39
HpyCH4V	TGCA	5 cut(s)	22, 34, 157, 183, 215
HpyF10VI	GCNNNNNNNGC	2 cut(s)	63, 315
HpyF3I	CTNAG	1 cut(s)	61
HspAI	GCGC	1 cut(s)	283
KflI	GGGWCCC	1 cut(s)	80
Kzo9I	GATC	1 cut(s)	9
LpnPI	CCDG	9 cut(s)	52, 61, 97, 106, 187, 214, 216, 254, 298
Lsp1109I	GCAGC	1 cut(s)	199
MalI	GATC	1 cut(s)	11
MboI	GATC	1 cut(s)	9
MboII	GAAGA	1 cut(s)	265
MluCI	AATT	3 cut(s)	87, 293, 332
MnlI	CCTC	1 cut(s)	68
MseI	TTAA	2 cut(s)	292, 296
MslI	CAYNNNNRTG	1 cut(s)	220
MspR9I	CCNGG	1 cut(s)	202
Mva1269I	GAATGC	1 cut(s)	34
MvaI	CCWGG	1 cut(s)	202
MwoI	GCNNNNNNNGC	2 cut(s)	63, 315
NdeI	CATATG	1 cut(s)	185
NdeII	GATC	1 cut(s)	9
NlaIV	GGNNCC	2 cut(s)	81, 82
PacI	TTAATTAA	1 cut(s)	296
PctI	GAATGC	1 cut(s)	34
PfeI	GAWTC	1 cut(s)	172
PflMI	CCANNNNNTGG	1 cut(s)	247
PkrI	GCNGC	1 cut(s)	214
PpuMI	RGGWCCY	1 cut(s)	80
PshBI	ATTAAT	1 cut(s)	292
Psp5II	RGGWCCY	1 cut(s)	80
Psp6I	CCWGG	1 cut(s)	200
PspGI	CCWGG	1 cut(s)	200
PspN4I	GGNNCC	2 cut(s)	81, 82
PspPI	GGNCC	3 cut(s)	80, 121, 192
PspPPI	RGGWCCY	1 cut(s)	80
RseI	CAYNNNNRTG	1 cut(s)	220
SaqAI	TTAA	2 cut(s)	292, 296
SatI	GCNGC	1 cut(s)	213
Sau3AI	GATC	1 cut(s)	9
Sau96I	GGNCC	3 cut(s)	80, 121, 192
ScrFI	CCNGG	1 cut(s)	202
SetI	ASST	5 cut(s)	132, 220, 235, 304, 324
SfcI	CTRYAG	1 cut(s)	310
SinI	GGWCC	2 cut(s)	80, 121
SmiMI	CAYNNNNRTG	1 cut(s)	220
Sse9I	AATT	3 cut(s)	87, 293, 332
SsiI	CCGC	1 cut(s)	277
StyD4I	CCNGG	1 cut(s)	200
TaqII	GACCGA	1 cut(s)	109
TasI	AATT	3 cut(s)	87, 293, 332
TfiI	GAWTC	1 cut(s)	172
Tru1I	TTAA	2 cut(s)	292, 296
Tru9I	TTAA	2 cut(s)	292, 296
TscAI	CASTG	3 cut(s)	80, 167, 311
TseI	GCWGC	1 cut(s)	212
TspDTI	ATGAA	1 cut(s)	149
TspGWI	ACGGA	1 cut(s)	57
TspRI	CASTG	3 cut(s)	80, 167, 311
Van91I	CCANNNNNTGG	1 cut(s)	247
VpaK11BI	GGWCC	2 cut(s)	80, 121
VspI	ATTAAT	1 cut(s)	292
XapI	RAATTY	1 cut(s)	87

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.