Cullin-associated NEDD8-dissociated protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G02560 AT2G02560 |
| fragaria_vesca | FvH4_7g33400 FvH4_7g33400 |
| malus_domestica | MD01G1232300.v1.1 MD07G1304100.v1.1 |
| prunus_persica | Prupe.2G322700_v2.0.a1 Prupe.2G322700_v2.0.a1 Prupe.2G322700_v2.0.a1 |
| pyrus_communis | pycom01g24070 pycom07g27710 |
| rosa_chinensis | RchiOBHm_Chr1g0383371 |
| rosa_laevigata | RLG00000026107 |
| rosa_multiflora | Rmu_co8130632.1_g000001 Rmu_sc0007173.1_g000011 Rmu_sc0019557.1_g000001 Rmu_sc0020036.1_g000001 |
| rosa_roxburghii | Rroxscaffold_4G00277350 |
| rosa_rugosa | Rorug01G0441000 |
| rosa_samantha | Rh1AG466900 Rh1BG424200 Rh1CG437300 Rh1DG456900 |
| rosa_wichuraiana | Rw1G040570 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 3020 |
| Acc36I | ACCTGC | 1 cut(s) | 2854 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 2123 |
| AccI | GTMKAC | 2 cut(s) | 25, 1733 |
| AciI | CCGC | 7 cut(s) | 176, 1025, 1861, 2153, 2875, 3481, 3522 |
| AclWI | GGATC | 6 cut(s) | 276, 1245, 1893, 2972, 3408, 3472 |
| AcoI | YGGCCR | 1 cut(s) | 2100 |
| AcsI | RAATTY | 4 cut(s) | 849, 1963, 2415, 2758 |
| AcuI | CTGAAG | 1 cut(s) | 1572 |
| AdeI | CACNNNGTG | 1 cut(s) | 3181 |
| AfaI | GTAC | 8 cut(s) | 649, 782, 1141, 1782, 2437, 3052, 3375, 3596 |
| AfeI | AGCGCT | 2 cut(s) | 2160, 3487 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 534, 1260, 1860, 2077, 2123, 2306, 3082 |
| AflII | CTTAAG | 2 cut(s) | 2867, 3539 |
| AjnI | CCWGG | 6 cut(s) | 391, 821, 1344, 1372, 1491, 2076 |
| Alw21I | GWGCWC | 3 cut(s) | 404, 499, 1155 |
| Alw26I | GTCTC | 2 cut(s) | 510, 2553 |
| AlwI | GGATC | 6 cut(s) | 276, 1245, 1893, 2972, 3408, 3472 |
| Aor51HI | AGCGCT | 2 cut(s) | 2160, 3487 |
| AoxI | GGCC | 7 cut(s) | 525, 588, 1650, 1931, 2067, 2100, 2945 |
| ApoI | RAATTY | 4 cut(s) | 849, 1963, 2415, 2758 |
| AseI | ATTAAT | 6 cut(s) | 735, 1031, 1088, 1197, 1257, 2168 |
| Asp700I | GAANNNNTTC | 4 cut(s) | 603, 771, 804, 852 |
| AspLEI | GCGC | 3 cut(s) | 2161, 2836, 3488 |
| AspS9I | GGNCC | 7 cut(s) | 701, 1956, 1997, 2068, 2638, 3007, 3164 |
| AsuHPI | GGTGA | 4 cut(s) | 190, 1583, 1754, 2387 |
| AvaII | GGWCC | 6 cut(s) | 701, 1956, 1997, 2638, 3007, 3164 |
| BanII | GRGCYC | 1 cut(s) | 1155 |
| BauI | CACGAG | 1 cut(s) | 216 |
| BbsI | GAAGAC | 1 cut(s) | 3477 |
| Bbv12I | GWGCWC | 3 cut(s) | 404, 499, 1155 |
| BceAI | ACGGC | 1 cut(s) | 2082 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 155, 189 |
| BciT130I | CCWGG | 6 cut(s) | 393, 823, 1346, 1374, 1493, 2078 |
| BclI | TGATCA | 3 cut(s) | 3118, 3144, 3304 |
| BcoDI | GTCTC | 2 cut(s) | 510, 2553 |
| BfaI | CTAG | 6 cut(s) | 128, 797, 1503, 2267, 3236, 3299 |
| BfmI | CTRYAG | 4 cut(s) | 2186, 2394, 2571, 2712 |
| BfoI | RGCGCY | 2 cut(s) | 2162, 3489 |
| BfrI | CTTAAG | 2 cut(s) | 2867, 3539 |
| BfuAI | ACCTGC | 1 cut(s) | 2854 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1939 |
| BglII | AGATCT | 1 cut(s) | 2497 |
| BlpI | GCTNAGC | 2 cut(s) | 1021, 2448 |
| BmcAI | AGTACT | 2 cut(s) | 1141, 3596 |
| Bme1390I | CCNGG | 6 cut(s) | 393, 823, 1346, 1374, 1493, 2078 |
| Bme18I | GGWCC | 6 cut(s) | 701, 1956, 1997, 2638, 3007, 3164 |
| BmgT120I | GGNCC | 7 cut(s) | 701, 1956, 1997, 2068, 2638, 3007, 3164 |
| BmiI | GGNNCC | 4 cut(s) | 703, 1957, 1958, 2859 |
| BmrFI | CCNGG | 6 cut(s) | 393, 823, 1346, 1374, 1493, 2078 |
| BmrI | ACTGGG | 3 cut(s) | 719, 1961, 2111 |
| BmuI | ACTGGG | 3 cut(s) | 719, 1961, 2111 |
| BoxI | GACNNNNGTC | 1 cut(s) | 3360 |
| BpiI | GAAGAC | 1 cut(s) | 3477 |
| BpmI | CTGGAG | 1 cut(s) | 50 |
| Bpu10I | CCTNAGC | 1 cut(s) | 812 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 1021, 2448 |
| BpuEI | CTTGAG | 3 cut(s) | 634, 953, 3215 |
| BsaAI | YACGTR | 1 cut(s) | 1271 |
| BsaBI | GATNNNNATC | 3 cut(s) | 123, 273, 1683 |
| BsaJI | CCNNGG | 5 cut(s) | 391, 821, 822, 2076, 2229 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 2552, 2582 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 534, 1260, 1860, 2077, 2123, 2306, 3082 |
| Bse118I | RCCGGY | 1 cut(s) | 3015 |
| Bse1I | ACTGG | 8 cut(s) | 25, 33, 725, 1171, 1956, 2117, 2859, 3381 |
| Bse3DI | GCAATG | 9 cut(s) | 9, 21, 282, 1842, 1856, 2462, 2809, 2916, 3472 |
| Bse8I | GATNNNNATC | 3 cut(s) | 123, 273, 1683 |
| BseBI | CCWGG | 6 cut(s) | 393, 823, 1346, 1374, 1493, 2078 |
| BseDI | CCNNGG | 5 cut(s) | 391, 821, 822, 2076, 2229 |
| BseGI | GGATG | 8 cut(s) | 979, 1135, 1480, 1488, 1800, 3190, 3503, 3603 |
| BseJI | GATNNNNATC | 3 cut(s) | 123, 273, 1683 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 534, 1260, 1860, 2077, 2123, 2306, 3082 |
| BseMI | GCAATG | 9 cut(s) | 9, 21, 282, 1842, 1856, 2462, 2809, 2916, 3472 |
| BseMII | CTCAG | 8 cut(s) | 380, 521, 747, 866, 1038, 1140, 2315, 2715 |
| BseNI | ACTGG | 8 cut(s) | 25, 33, 725, 1171, 1956, 2117, 2859, 3381 |
| BseRI | GAGGAG | 5 cut(s) | 950, 953, 1085, 2289, 2573 |
| BseYI | CCCAGC | 1 cut(s) | 2887 |
| BsgI | GTGCAG | 4 cut(s) | 2074, 2847, 3051, 3564 |
| BshFI | GGCC | 7 cut(s) | 527, 590, 1652, 1933, 2069, 2102, 2947 |
| BsiHKAI | GWGCWC | 3 cut(s) | 404, 499, 1155 |
| BsiSI | CCGG | 1 cut(s) | 3016 |
| BslFI | GGGAC | 5 cut(s) | 707, 804, 1734, 1969, 3602 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 534, 1260, 1860, 2077, 2123, 2306, 3082 |
| BsmAI | GTCTC | 2 cut(s) | 510, 2553 |
| BsmFI | GGGAC | 5 cut(s) | 707, 804, 1734, 1969, 3602 |
| BsmI | GAATGC | 1 cut(s) | 1910 |
| BsnI | GGCC | 7 cut(s) | 527, 590, 1652, 1933, 2069, 2102, 2947 |
| Bsp1286I | GDGCHC | 3 cut(s) | 404, 499, 1155 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 1021, 2448 |
| BspACI | CCGC | 7 cut(s) | 176, 1025, 1861, 2153, 2875, 3481, 3522 |
| BspANI | GGCC | 7 cut(s) | 527, 590, 1652, 1933, 2069, 2102, 2947 |
| BspCNI | CTCAG | 8 cut(s) | 379, 520, 748, 867, 1039, 1141, 2314, 2716 |
| BspLI | GGNNCC | 4 cut(s) | 703, 1957, 1958, 2859 |
| BspMAI | CTGCAG | 1 cut(s) | 2575 |
| BspMI | ACCTGC | 1 cut(s) | 2854 |
| BspPI | GGATC | 6 cut(s) | 276, 1245, 1893, 2972, 3408, 3472 |
| BspQI | GCTCTTC | 2 cut(s) | 762, 997 |
| BspTI | CTTAAG | 2 cut(s) | 2867, 3539 |
| BsrDI | GCAATG | 9 cut(s) | 9, 21, 282, 1842, 1856, 2462, 2809, 2916, 3472 |
| BsrFI | RCCGGY | 1 cut(s) | 3015 |
| BsrI | ACTGG | 8 cut(s) | 25, 33, 725, 1171, 1956, 2117, 2859, 3381 |
| BssAI | RCCGGY | 1 cut(s) | 3015 |
| BssECI | CCNNGG | 5 cut(s) | 391, 821, 822, 2076, 2229 |
| BssNAI | GTATAC | 1 cut(s) | 26 |
| BssSI | CACGAG | 1 cut(s) | 216 |
| BssT1I | CCWWGG | 1 cut(s) | 2229 |
| Bst1107I | GTATAC | 1 cut(s) | 26 |
| Bst2BI | CACGAG | 1 cut(s) | 216 |
| Bst2UI | CCWGG | 6 cut(s) | 393, 823, 1346, 1374, 1493, 2078 |
| Bst6I | CTCTTC | 4 cut(s) | 762, 997, 2280, 2784 |
| BstAFI | CTTAAG | 2 cut(s) | 2867, 3539 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1234 |
| BstBAI | YACGTR | 1 cut(s) | 1271 |
| BstC8I | GCNNGC | 9 cut(s) | 212, 289, 529, 792, 1944, 2157, 2196, 3030, 3351 |
| BstEII | GGTNACC | 1 cut(s) | 2606 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 3080 |
| BstF5I | GGATG | 8 cut(s) | 979, 1135, 1480, 1488, 1800, 3190, 3503, 3603 |
| BstH2I | RGCGCY | 2 cut(s) | 2162, 3489 |
| BstHHI | GCGC | 3 cut(s) | 2161, 2836, 3488 |
| BstMAI | GTCTC | 2 cut(s) | 510, 2553 |
| BstNI | CCWGG | 6 cut(s) | 393, 823, 1346, 1374, 1493, 2078 |
| BstNSI | RCATGY | 1 cut(s) | 3023 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 3360 |
| BstPI | GGTNACC | 1 cut(s) | 2606 |
| BstSCI | CCNGG | 6 cut(s) | 391, 821, 1344, 1372, 1491, 2076 |
| BstSFI | CTRYAG | 4 cut(s) | 2186, 2394, 2571, 2712 |
| BstV2I | GAAGAC | 1 cut(s) | 3477 |
| BstX2I | RGATCY | 3 cut(s) | 1250, 2497, 2964 |
| BstYI | RGATCY | 3 cut(s) | 1250, 2497, 2964 |
| BstZ17I | GTATAC | 1 cut(s) | 26 |
| BsuRI | GGCC | 7 cut(s) | 527, 590, 1652, 1933, 2069, 2102, 2947 |
| BtsCI | GGATG | 8 cut(s) | 979, 1135, 1480, 1488, 1800, 3190, 3503, 3603 |
| BtsI | GCAGTG | 1 cut(s) | 2180 |
| BtsIMutI | CAGTG | 9 cut(s) | 591, 732, 894, 1146, 1949, 2036, 2180, 2403, 2773 |
| BveI | ACCTGC | 1 cut(s) | 2854 |
| Cac8I | GCNNGC | 9 cut(s) | 212, 289, 529, 792, 1944, 2157, 2196, 3030, 3351 |
| CfoI | GCGC | 3 cut(s) | 2161, 2836, 3488 |
| Cfr10I | RCCGGY | 1 cut(s) | 3015 |
| Cfr13I | GGNCC | 7 cut(s) | 701, 1956, 1997, 2068, 2638, 3007, 3164 |
| Csp6I | GTAC | 8 cut(s) | 648, 781, 1140, 1781, 2436, 3051, 3374, 3595 |
| CviQI | GTAC | 8 cut(s) | 648, 781, 1140, 1781, 2436, 3051, 3374, 3595 |
| DraI | TTTAAA | 2 cut(s) | 112, 1102 |
| DraIII | CACNNNGTG | 1 cut(s) | 3181 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 3020 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 3020 |
| EaeI | YGGCCR | 1 cut(s) | 2100 |
| Eam1104I | CTCTTC | 4 cut(s) | 762, 997, 2280, 2784 |
| EarI | CTCTTC | 4 cut(s) | 762, 997, 2280, 2784 |
| Ecl136II | GAGCTC | 1 cut(s) | 1153 |
| Eco130I | CCWWGG | 1 cut(s) | 2229 |
| Eco24I | GRGCYC | 1 cut(s) | 1155 |
| Eco32I | GATATC | 1 cut(s) | 430 |
| Eco47I | GGWCC | 6 cut(s) | 701, 1956, 1997, 2638, 3007, 3164 |
| Eco47III | AGCGCT | 2 cut(s) | 2160, 3487 |
| Eco53kI | GAGCTC | 1 cut(s) | 1153 |
| Eco57I | CTGAAG | 1 cut(s) | 1572 |
| Eco91I | GGTNACC | 1 cut(s) | 2606 |
| EcoICRI | GAGCTC | 1 cut(s) | 1153 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 3080 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1956 |
| EcoO65I | GGTNACC | 1 cut(s) | 2606 |
| EcoRI | GAATTC | 1 cut(s) | 1963 |
| EcoRII | CCWGG | 6 cut(s) | 391, 821, 1344, 1372, 1491, 2076 |
| EcoRV | GATATC | 1 cut(s) | 430 |
| EcoT14I | CCWWGG | 1 cut(s) | 2229 |
| EcoT38I | GRGCYC | 1 cut(s) | 1155 |
| ErhI | CCWWGG | 1 cut(s) | 2229 |
| FaqI | GGGAC | 5 cut(s) | 707, 804, 1734, 1969, 3602 |
| FauNDI | CATATG | 2 cut(s) | 2061, 2581 |
| FbaI | TGATCA | 3 cut(s) | 3118, 3144, 3304 |
| FblI | GTMKAC | 2 cut(s) | 25, 1733 |
| FokI | GGATG | 8 cut(s) | 986, 1142, 1467, 1475, 1807, 3197, 3490, 3590 |
| FriOI | GRGCYC | 1 cut(s) | 1155 |
| FspBI | CTAG | 6 cut(s) | 128, 797, 1503, 2267, 3236, 3299 |
| GlaI | GCGC | 3 cut(s) | 2160, 2835, 3487 |
| GsaI | CCCAGC | 1 cut(s) | 2891 |
| GsuI | CTGGAG | 1 cut(s) | 50 |
| HaeII | RGCGCY | 2 cut(s) | 2162, 3489 |
| HaeIII | GGCC | 7 cut(s) | 527, 590, 1652, 1933, 2069, 2102, 2947 |
| HapII | CCGG | 1 cut(s) | 3016 |
| HhaI | GCGC | 3 cut(s) | 2161, 2836, 3488 |
| Hin6I | GCGC | 3 cut(s) | 2159, 2834, 3486 |
| HinP1I | GCGC | 3 cut(s) | 2159, 2834, 3486 |
| HincII | GTYRAC | 2 cut(s) | 1734, 1905 |
| HindII | GTYRAC | 2 cut(s) | 1734, 1905 |
| HindIII | AAGCTT | 3 cut(s) | 562, 1386, 3347 |
| HinfI | GANTC | 9 cut(s) | 181, 219, 643, 1207, 2048, 2270, 2537, 3259, 3389 |
| HpaII | CCGG | 1 cut(s) | 3016 |
| HphI | GGTGA | 4 cut(s) | 190, 1583, 1754, 2387 |
| Hpy166II | GTNNAC | 5 cut(s) | 26, 1574, 1734, 1905, 3226 |
| Hpy8I | GTNNAC | 5 cut(s) | 26, 1574, 1734, 1905, 3226 |
| HpyCH4IV | ACGT | 2 cut(s) | 545, 1270 |
| HpySE526I | ACGT | 2 cut(s) | 545, 1270 |
| HspAI | GCGC | 3 cut(s) | 2159, 2834, 3486 |
| KflI | GGGWCCC | 1 cut(s) | 1956 |
| Ksp22I | TGATCA | 3 cut(s) | 3118, 3144, 3304 |
| LguI | GCTCTTC | 2 cut(s) | 762, 997 |
| LmnI | GCTCC | 2 cut(s) | 193, 3605 |
| MaeI | CTAG | 6 cut(s) | 128, 797, 1503, 2267, 3236, 3299 |
| MaeII | ACGT | 2 cut(s) | 545, 1270 |
| MaeIII | GTNAC | 8 cut(s) | 278, 878, 1174, 1394, 1532, 1543, 1659, 2606 |
| MfeI | CAATTG | 1 cut(s) | 3498 |
| MflI | RGATCY | 3 cut(s) | 1250, 2497, 2964 |
| MhlI | GDGCHC | 3 cut(s) | 404, 499, 1155 |
| MlyI | GAGTC | 5 cut(s) | 228, 637, 1216, 2264, 2546 |
| MmeI | TCCRAC | 1 cut(s) | 971 |
| MroXI | GAANNNNTTC | 4 cut(s) | 603, 771, 804, 852 |
| MslI | CAYNNNNRTG | 6 cut(s) | 14, 296, 2096, 2467, 3217, 3312 |
| MspA1I | CMGCKG | 5 cut(s) | 1550, 1823, 2891, 3035, 3371 |
| MspCI | CTTAAG | 2 cut(s) | 2867, 3539 |
| MspI | CCGG | 1 cut(s) | 3016 |
| MspR9I | CCNGG | 6 cut(s) | 393, 823, 1346, 1374, 1493, 2078 |
| MunI | CAATTG | 1 cut(s) | 3498 |
| Mva1269I | GAATGC | 1 cut(s) | 1910 |
| MvaI | CCWGG | 6 cut(s) | 393, 823, 1346, 1374, 1493, 2078 |
| NdeI | CATATG | 2 cut(s) | 2061, 2581 |
| NlaIV | GGNNCC | 4 cut(s) | 703, 1957, 1958, 2859 |
| NmeAIII | GCCGAG | 1 cut(s) | 2423 |
| NmuCI | GTSAC | 5 cut(s) | 278, 1174, 1394, 1543, 1659 |
| NspI | RCATGY | 1 cut(s) | 3023 |
| PacI | TTAATTAA | 1 cut(s) | 2172 |
| PasI | CCCWGGG | 1 cut(s) | 822 |
| PciSI | GCTCTTC | 2 cut(s) | 762, 997 |
| PctI | GAATGC | 1 cut(s) | 1910 |
| PdmI | GAANNNNTTC | 4 cut(s) | 603, 771, 804, 852 |
| PfeI | GAWTC | 4 cut(s) | 181, 2048, 3259, 3389 |
| PflFI | GACNNNGTC | 1 cut(s) | 719 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 2123 |
| PfoI | TCCNGGA | 1 cut(s) | 1372 |
| PleI | GAGTC | 5 cut(s) | 227, 637, 1215, 2264, 2545 |
| PpsI | GAGTC | 5 cut(s) | 227, 637, 1215, 2264, 2545 |
| Ppu21I | YACGTR | 1 cut(s) | 1271 |
| PpuMI | RGGWCCY | 1 cut(s) | 1956 |
| PshAI | GACNNNNGTC | 1 cut(s) | 3360 |
| PshBI | ATTAAT | 6 cut(s) | 735, 1031, 1088, 1197, 1257, 2168 |
| Psp124BI | GAGCTC | 1 cut(s) | 1155 |
| Psp5II | RGGWCCY | 1 cut(s) | 1956 |
| Psp6I | CCWGG | 6 cut(s) | 391, 821, 1344, 1372, 1491, 2076 |
| PspEI | GGTNACC | 1 cut(s) | 2606 |
| PspFI | CCCAGC | 1 cut(s) | 2887 |
| PspGI | CCWGG | 6 cut(s) | 391, 821, 1344, 1372, 1491, 2076 |
| PspN4I | GGNNCC | 4 cut(s) | 703, 1957, 1958, 2859 |
| PspPI | GGNCC | 7 cut(s) | 701, 1956, 1997, 2068, 2638, 3007, 3164 |
| PspPPI | RGGWCCY | 1 cut(s) | 1956 |
| PstI | CTGCAG | 1 cut(s) | 2575 |
| PsuI | RGATCY | 3 cut(s) | 1250, 2497, 2964 |
| PsyI | GACNNNGTC | 1 cut(s) | 719 |
| PvuII | CAGCTG | 5 cut(s) | 1550, 1823, 2891, 3035, 3371 |
| RsaI | GTAC | 8 cut(s) | 649, 782, 1141, 1782, 2437, 3052, 3375, 3596 |
| RsaNI | GTAC | 8 cut(s) | 648, 781, 1140, 1781, 2436, 3051, 3374, 3595 |
| RseI | CAYNNNNRTG | 6 cut(s) | 14, 296, 2096, 2467, 3217, 3312 |
| SacI | GAGCTC | 1 cut(s) | 1155 |
| SalI | GTCGAC | 1 cut(s) | 1732 |
| SapI | GCTCTTC | 2 cut(s) | 762, 997 |
| Sau96I | GGNCC | 7 cut(s) | 701, 1956, 1997, 2068, 2638, 3007, 3164 |
| ScaI | AGTACT | 2 cut(s) | 1141, 3596 |
| SchI | GAGTC | 5 cut(s) | 228, 637, 1216, 2264, 2546 |
| ScrFI | CCNGG | 6 cut(s) | 393, 823, 1346, 1374, 1493, 2078 |
| SduI | GDGCHC | 3 cut(s) | 404, 499, 1155 |
| SfcI | CTRYAG | 4 cut(s) | 2186, 2394, 2571, 2712 |
| SinI | GGWCC | 6 cut(s) | 701, 1956, 1997, 2638, 3007, 3164 |
| SmiMI | CAYNNNNRTG | 6 cut(s) | 14, 296, 2096, 2467, 3217, 3312 |
| SmlI | CTYRAG | 5 cut(s) | 613, 932, 2867, 3194, 3539 |
| SmoI | CTYRAG | 5 cut(s) | 613, 932, 2867, 3194, 3539 |
| SsiI | CCGC | 7 cut(s) | 176, 1025, 1861, 2153, 2875, 3481, 3522 |
| SspI | AATATT | 5 cut(s) | 148, 655, 2527, 2596, 2621 |
| SspMI | CTAG | 6 cut(s) | 128, 797, 1503, 2267, 3236, 3299 |
| SstI | GAGCTC | 1 cut(s) | 1155 |
| StyD4I | CCNGG | 6 cut(s) | 391, 821, 1344, 1372, 1491, 2076 |
| StyI | CCWWGG | 1 cut(s) | 2229 |
| TaiI | ACGT | 2 cut(s) | 548, 1273 |
| TaqI | TCGA | 6 cut(s) | 143, 165, 1733, 1813, 2535, 2556 |
| TaqII | GACCGA | 1 cut(s) | 1985 |
| TatI | WGTACW | 7 cut(s) | 780, 1139, 1780, 2435, 3050, 3373, 3594 |
| TauI | GCSGC | 1 cut(s) | 1028 |
| TfiI | GAWTC | 4 cut(s) | 181, 2048, 3259, 3389 |
| TscAI | CASTG | 9 cut(s) | 598, 732, 901, 1153, 1956, 2043, 2187, 2403, 2780 |
| TseFI | GTSAC | 5 cut(s) | 278, 1174, 1394, 1543, 1659 |
| Tsp45I | GTSAC | 5 cut(s) | 278, 1174, 1394, 1543, 1659 |
| TspGWI | ACGGA | 3 cut(s) | 986, 1571, 1933 |
| TspRI | CASTG | 9 cut(s) | 598, 732, 901, 1153, 1956, 2043, 2187, 2403, 2780 |
| Tth111I | GACNNNGTC | 1 cut(s) | 719 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 2123 |
| Vha464I | CTTAAG | 2 cut(s) | 2867, 3539 |
| VpaK11BI | GGWCC | 6 cut(s) | 701, 1956, 1997, 2638, 3007, 3164 |
| VspI | ATTAAT | 6 cut(s) | 735, 1031, 1088, 1197, 1257, 2168 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 3080 |
| XapI | RAATTY | 4 cut(s) | 849, 1963, 2415, 2758 |
| XbaI | TCTAGA | 2 cut(s) | 127, 3298 |
| XceI | RCATGY | 1 cut(s) | 3023 |
| XmiI | GTMKAC | 2 cut(s) | 25, 1733 |
| XmnI | GAANNNNTTC | 4 cut(s) | 603, 771, 804, 852 |
| XspI | CTAG | 6 cut(s) | 128, 797, 1503, 2267, 3236, 3299 |
| ZrmI | AGTACT | 2 cut(s) | 1141, 3596 |