Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0007920

Physical Location & Seq

Genomic Coordinates Reverse (-)

572559 .. 586906

Gene Structure 14348 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000026107

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3780 bp

ATGAATGAGAATGTGGATGATAATCAAAGCAAATGTGGGAAGTATAAGGAGAAACTCGCTCGTCGCCGGTCGTTGATAATCTACGATTTCATATACGGGAGAATTTGTGAGTTCGAGCACAGAGAGATGGCGAACATTGCAATGACTGGTATACTGGAGAAGATGACGGGGAAGGATAAGGATTATAGATACATGGCAACATCTGATTTGTTGAACGAATTAAACAAAGACAATTTTAAAGCCGATGCTGATCTAGAGATAAAGTTGTCGAATATTATTATTCAGCAACTTGATGATGTTGCCGGCGATGTATCTGGATTGGCTGTCAAATGTCTTGCTCCATTAGTTAAGAAGGTCAGCGAGCCACGAGTCGTGGAGATGACAAATAAACTTTGTGAGAAATTGCTAAAGGAGAAGGATCAACATCGTGACATTGCCAGCATAGCTATGAAGGCTATTGTTGCAGAAGTTTCTACTCAATCACTTGCACAGTCTATTCTTGTGTCTATTTTACCGCAGTTGATTAAAGGAATTACTGCCCCGGGAATGAGCACAGAGATAAAATGTGAATGTCTTGATATCTTATGTGATGTCCTTCATAAGTTTGGCAATCTTATGGCAACCGACCATGAGCTGCTATTAGGTGCTCTCTTGTCTCAGTTGAGTTCCAATCAAGCCAGCGTGAGGAAGAAAACTGTGTCATGCATCGCATCACTTGCTTCAAGCTTGTCAGACGATTTGTTGGCAAAGGCCACTGTTGAAGTTGTTCAGAACTTGAGAAATAAAGGCATGAAGTCTGAAATGACTCGTACAAATATTCAGATGATTGGTGCTTTAAGTCGTGCTGTTGGCTATCGTTTTGGACCCCATCTTGCTGACACTGTCCCAGTGCTAATTAATTATTGCACAAGTGCATCTGAGAATGATGAAGAGCTTCGTGAGTACAGTTTGCAGGCACTAGAAAGTTTTCTGCTTAGGTGTCCCAGGGATATTTCTTCCTATTGTGATGAAATTCTTCATCTTAACTTGGAGTATCTGAGTTACGACCCAAACTTCACTGATAACATGGAAGAAGATACTGATGATGAAACTCTTGAGGAGGAGGAAGATGATGAGAGTGCGAATGAATATACGGATGATGAAGATGTCAGCTGGAAAGTCCGAAGAGCAGCAGCTAAATGCTTAGCGGCATTAATTGTATCTCGTCCTGAGATGCTTACCAAGCTGTATGAGGAGGCTTGTCCAAAATTAATTGAGAGATTTAAAGAGAGGGAAGAAAATGTCAAGATGGATGTTTTCAGTACTTTCACTGAGCTCTTGCAGCAAACTGGAAATGTCACAAAGGGTCAGATTGATATTAATGAACAGAGTCCAAGATGGTTATTGAAGCAAGAAGTGCCAAAGATCGTCAGATCCATTAATAGGCAACTACGTGAGAAATCTATCAAGACGAAGGTTGGTGCATTTTCTGTATTGAAAGAACTTGTGGTGGTCTTGCCAGATTGCCTGGCAGATCAAATTGGCTCACTCATTCCAGGAATTGAGAAAGCTTTAAGTGACAAGTCCTCTACCTCCAATTTGAAGATTGAAGCTCTTATATTTACAAGATTGGTGTTGGCTTCACATTCTCCTTCTGTTTTCCATCCTTACATCCAGGCTCTCTCTAGTCCTGTTTTATCTGCTGTGGCAGAGCGTTACTACAAAGTCACAGCTGAAGCACTTAGGGTCTGTGGTGAACTTGTCCGTGTTGTTCGCCCAAATGTTGAGGGGATTGGTTTTGATTTCAAACCTTATGTTCAACCAATATATAAGGCCATAATGTCACGCTTGACGAACCAAGATCAAGATCAGGAGGTAAAAGAATGTGCCATATCTTGCATGGGACTACTTGTGTCGACATTTGGTGATAACCTCAATGCTGAATTACCTGTGTGCCTTCCTGTACTTGTTGATCGGATGGGAAATGAGATCACTCGACTTACAGCTGTGAAGGCATTTGCTGTCATTGCTTCTTCCCCATTGCGGATAGACCTGTCTTGTGTTTTGGATCAAGTGATTGCAGAGTTGACTGCATTCTTACGGAAGGCTAATCGGCCTCTAAGGCAGGCAACGCTGGGGACCCTGAATTCCCTGATTGTTGCCTATGGTGATAAAATCGGTTCATCAGCTTATGAAGTTATTATTGTTGAACTTGCAACACTGATAAGTGATTCAGACTTGCATATGACGGCCCTTGCCCTGGAACTTTGCTGCACCTTGATGGCCGACAGGTCAAGCCCAATTGTTGGTTTGGCTGTTAGAAATAAAGTTCTTCCACAAGCGCTAACATTAATTAAAAGCTCACTGCTACAGGGGCAAGCTCTATTGGCTTTGCAAAACTTCTTTGCTTCCTTGGTGTATTCTGCAAATACAAGTTTTGATGCCTTGCTAGACTCTCTTCTATCAAGTGCTAAACCATCTCCTCAGTCTGGTGGGGTTGCAAAACAAGCTCTATATTCAATAGCTCAATGCGTGGCTGTCCTTTGTCTTGCTGCTGGTGATGAGAAATGTTCATCTACAGTGCAAATGCTTACCGAAATTCTCAAACATGACAGCAGTACAAACTCAGCTAAGCAGCATCTTGCATTGCTATGTCTTGGGGAGATTGGGAGAAGGAAAGATCTAAGCTCTCATGCCCATATTGAGAATATTGTTATCGAGTCATTTCAGTCTCCTTTCGAGGAGATTAAGTCTGCAGCCTCATATGCTCTTGGCAATATTGCGGTTGGTAACCTATTCAAATATTTGCCTTTTATCTTGGACCAGATTGATAATCAGCAGAAAAAACAGTATCTCTTGCTTCATTCTTTGAAAGAGGTCATAGTAAGGCAATCTGTAGATAAAGCTGAGTTTCAGGACAGTAGTGTTGAAAAAATACTAAATTTACTTTTTAATCACTGTGAAAGTGAGGAAGAGGGTGTTCGCAATGTGGTCGCTGAATGTCTGGGTAAAATTGCGCTTATTGAACCTGCAAAACTGGTTCCTGCACTTAAGGTGCGGACAACCAGCCCAGCTGCTTTCACAAGAGCTACGGTTGTCATTGCAGTCAAGTATTCAGTAGTGGAGAGGCCAGAGAAGATAGACGAGATCTTATATCCTGAAATCTCATCATTCCTGATGCTTATTAAGGATCATGACCGGCATGTCAGGCGTGCAGCTGTGTTGGCTTTAAGTACATTCGCCCATAATAAGCCAAACCTCATCAAGGGGCTTCTGCCAGAATTGTTGCCACTTCTTTATGATCAGACTGTTATTAAGAAAGAATTGATCAGGACAGTTGATCTTGGTCCTTTTAAGCACATTGTGGATGATGGGCTTGAGTTAAGGAAGGCTGCATTTGAATGTGTGGACACATTACTAGATAGTTGTCTTGACCAAGTGAATCCTTCATCATTTATTGTTCCTTACCTCAAATCTGGTCTAGATGATCATTATGATGTTAAGATGCCCTGCCATCTTATCCTCTCAAAGCTTGCAGACAAGTGTCCATCAGCTGTACTGGCAGTATTGGATTCATTGGTGGATCATCTCCAAAAAACCATCAACTTTAAGCCAAAGCAAGATGCTGTAAAGCAAGAAGTAGATCGCAATGAAGACATGATCCGCAGCGCTCTAAGAACAATTGCATCCTTGCATCGTATAAGCGGTGGAGATTGCAGCCTTAAGTTCAAGAACCTTACGAATGAAATATCAAAAACTCCTGCACTCTGGGACAAGTATTGCTCCATCCGAAACGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0006464 GO:0006807 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009733 GO:0009791 GO:0009987 GO:0010033 GO:0010051 GO:0010228 GO:0010265 GO:0016020 GO:0016043 GO:0016567 GO:0019538 GO:0022414 GO:0022607 GO:0030312 GO:0032446 GO:0032501 GO:0032502 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061458 GO:0065003 GO:0070647 GO:0071704 GO:0071840 GO:0071944 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TIP120

Protein Analysis

1260

Amino Acids

139.77

Weight (kDa)

5.61

Isoelectric Point (pI)

48.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_CAND1	PF25782	502 - 627	6.1e-48	CAND1-like, TPR repeats
TIP120	PF08623	1080 - 1242	2.1e-55	TATA-binding protein interacting (TIP20)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0007920)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G02560 AT2G02560
fragaria_vesca	FvH4_7g33400 FvH4_7g33400
malus_domestica	MD01G1232300.v1.1 MD07G1304100.v1.1
prunus_persica	Prupe.2G322700_v2.0.a1 Prupe.2G322700_v2.0.a1 Prupe.2G322700_v2.0.a1
pyrus_communis	pycom01g24070 pycom07g27710
rosa_chinensis	RchiOBHm_Chr1g0383371
rosa_laevigata	RLG00000026107
rosa_multiflora	Rmu_co8130632.1_g000001 Rmu_sc0007173.1_g000011 Rmu_sc0019557.1_g000001 Rmu_sc0020036.1_g000001
rosa_roxburghii	Rroxscaffold_4G00277350
rosa_rugosa	Rorug01G0441000
rosa_samantha	Rh1AG466900 Rh1BG424200 Rh1CG437300 Rh1DG456900
rosa_wichuraiana	Rw1G040570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	3182
Acc36I	ACCTGC	1 cut(s)	3016
AccB7I	CCANNNNNTGG	1 cut(s)	2285
AccI	GTMKAC	2 cut(s)	151, 1895
AciI	CCGC	7 cut(s)	515, 1187, 2023, 2762, 3037, 3643, 3684
AclWI	GGATC	6 cut(s)	426, 1407, 2055, 3177, 3570, 3634
AcoI	YGGCCR	1 cut(s)	2262
AcsI	RAATTY	5 cut(s)	102, 1011, 2125, 2577, 2920
AcuI	CTGAAG	1 cut(s)	1734
AdeI	CACNNNGTG	1 cut(s)	3343
AfaI	GTAC	7 cut(s)	811, 944, 1303, 1944, 2599, 3214, 3537
AfeI	AGCGCT	2 cut(s)	2322, 3649
AfiI	CCNNNNNNNGG	7 cut(s)	684, 1422, 2022, 2239, 2285, 2468, 3244
AflII	CTTAAG	2 cut(s)	3029, 3701
AjnI	CCWGG	5 cut(s)	983, 1506, 1534, 1653, 2238
Alw21I	GWGCWC	4 cut(s)	120, 554, 649, 1317
Alw26I	GTCTC	2 cut(s)	660, 2715
AlwI	GGATC	6 cut(s)	426, 1407, 2055, 3177, 3570, 3634
Ama87I	CYCGRG	1 cut(s)	541
Aor51HI	AGCGCT	2 cut(s)	2322, 3649
AoxI	GGCC	6 cut(s)	750, 1812, 2093, 2229, 2262, 3107
ApoI	RAATTY	5 cut(s)	102, 1011, 2125, 2577, 2920
AseI	ATTAAT	6 cut(s)	897, 1193, 1250, 1359, 1419, 2330
Asp700I	GAANNNNTTC	4 cut(s)	765, 933, 966, 1014
AspLEI	GCGC	3 cut(s)	2323, 2998, 3650
AspS9I	GGNCC	5 cut(s)	863, 2118, 2230, 2800, 3326
AsuC2I	CCSGG	2 cut(s)	542, 543
AsuHPI	GGTGA	4 cut(s)	1745, 1916, 2159, 2549
AvaI	CYCGRG	1 cut(s)	541
AvaII	GGWCC	4 cut(s)	863, 2118, 2800, 3326
BanII	GRGCYC	1 cut(s)	1317
BauI	CACGAG	1 cut(s)	366
BbsI	GAAGAC	1 cut(s)	3639
Bbv12I	GWGCWC	4 cut(s)	120, 554, 649, 1317
BceAI	ACGGC	1 cut(s)	2244
BcgI	CGANNNNNNTGC	2 cut(s)	2953, 2987
BciT130I	CCWGG	5 cut(s)	985, 1508, 1536, 1655, 2240
BclI	TGATCA	3 cut(s)	3280, 3306, 3466
BcnI	CCSGG	2 cut(s)	542, 543
BcoDI	GTCTC	2 cut(s)	660, 2715
BfaI	CTAG	6 cut(s)	254, 959, 1665, 2429, 3398, 3461
BfmI	CTRYAG	4 cut(s)	2348, 2556, 2733, 2874
BfoI	RGCGCY	2 cut(s)	2324, 3651
BfrI	CTTAAG	2 cut(s)	3029, 3701
BfuAI	ACCTGC	1 cut(s)	3016
BglI	GCCNNNNNGGC	1 cut(s)	2101
BglII	AGATCT	2 cut(s)	2659, 3126
BlpI	GCTNAGC	2 cut(s)	1183, 2610
BmcAI	AGTACT	1 cut(s)	1303
Bme1390I	CCNGG	7 cut(s)	542, 543, 985, 1508, 1536, 1655, 2240
Bme18I	GGWCC	4 cut(s)	863, 2118, 2800, 3326
BmeT110I	CYCGRG	1 cut(s)	541
BmgT120I	GGNCC	5 cut(s)	863, 2118, 2230, 2800, 3326
BmiI	GGNNCC	4 cut(s)	865, 2119, 2120, 3021
BmrFI	CCNGG	7 cut(s)	542, 543, 985, 1508, 1536, 1655, 2240
BmrI	ACTGGG	1 cut(s)	881
BmuI	ACTGGG	1 cut(s)	881
BoxI	GACNNNNGTC	1 cut(s)	3522
BpiI	GAAGAC	1 cut(s)	3639
BpmI	CTGGAG	1 cut(s)	176
Bpu10I	CCTNAGC	1 cut(s)	974
Bpu1102I	GCTNAGC	2 cut(s)	1183, 2610
BpuEI	CTTGAG	3 cut(s)	796, 1115, 3377
BpuMI	CCSGG	2 cut(s)	542, 543
BsaAI	YACGTR	1 cut(s)	1433
BsaBI	GATNNNNATC	4 cut(s)	21, 249, 423, 1845
BsaJI	CCNNGG	6 cut(s)	540, 541, 983, 984, 2238, 2391
BsaXI	ACNNNNNCTCC	4 cut(s)	91, 121, 2714, 2744
Bsc4I	CCNNNNNNNGG	7 cut(s)	684, 1422, 2022, 2239, 2285, 2468, 3244
Bse118I	RCCGGY	3 cut(s)	66, 302, 3177
Bse1I	ACTGG	6 cut(s)	151, 159, 887, 1333, 3021, 3543
Bse3DI	GCAATG	9 cut(s)	135, 147, 432, 2004, 2018, 2624, 2971, 3078, 3634
Bse8I	GATNNNNATC	4 cut(s)	21, 249, 423, 1845
BseBI	CCWGG	5 cut(s)	985, 1508, 1536, 1655, 2240
BseDI	CCNNGG	6 cut(s)	540, 541, 983, 984, 2238, 2391
BseGI	GGATG	9 cut(s)	22, 1141, 1297, 1642, 1650, 1962, 3352, 3665, 3765
BseJI	GATNNNNATC	4 cut(s)	21, 249, 423, 1845
BseLI	CCNNNNNNNGG	7 cut(s)	684, 1422, 2022, 2239, 2285, 2468, 3244
BseMI	GCAATG	9 cut(s)	135, 147, 432, 2004, 2018, 2624, 2971, 3078, 3634
BseMII	CTCAG	8 cut(s)	671, 909, 1028, 1200, 1302, 2477, 2619, 2877
BseNI	ACTGG	6 cut(s)	151, 159, 887, 1333, 3021, 3543
BseRI	GAGGAG	5 cut(s)	1112, 1115, 1247, 2451, 2735
BseYI	CCCAGC	2 cut(s)	2113, 3049
BsgI	GTGCAG	4 cut(s)	2236, 3009, 3213, 3726
Bsh1285I	CGRYCG	1 cut(s)	71
BshFI	GGCC	6 cut(s)	752, 1814, 2095, 2231, 2264, 3109
BsiEI	CGRYCG	1 cut(s)	71
BsiHKAI	GWGCWC	4 cut(s)	120, 554, 649, 1317
BsiHKCI	CYCGRG	1 cut(s)	541
BsiSI	CCGG	4 cut(s)	67, 303, 542, 3178
BslFI	GGGAC	5 cut(s)	869, 966, 1896, 2131, 3764
BslI	CCNNNNNNNGG	7 cut(s)	684, 1422, 2022, 2239, 2285, 2468, 3244
BsmAI	GTCTC	2 cut(s)	660, 2715
BsmFI	GGGAC	5 cut(s)	869, 966, 1896, 2131, 3764
BsmI	GAATGC	1 cut(s)	2072
BsnI	GGCC	6 cut(s)	752, 1814, 2095, 2231, 2264, 3109
BsoBI	CYCGRG	1 cut(s)	541
Bsp1286I	GDGCHC	4 cut(s)	120, 554, 649, 1317
Bsp1720I	GCTNAGC	2 cut(s)	1183, 2610
BspACI	CCGC	7 cut(s)	515, 1187, 2023, 2762, 3037, 3643, 3684
BspANI	GGCC	6 cut(s)	752, 1814, 2095, 2231, 2264, 3109
BspCNI	CTCAG	8 cut(s)	670, 910, 1029, 1201, 1303, 2476, 2618, 2878
BspHI	TCATGA	1 cut(s)	3172
BspLI	GGNNCC	4 cut(s)	865, 2119, 2120, 3021
BspMAI	CTGCAG	1 cut(s)	2737
BspMI	ACCTGC	1 cut(s)	3016
BspPI	GGATC	6 cut(s)	426, 1407, 2055, 3177, 3570, 3634
BspQI	GCTCTTC	2 cut(s)	924, 1159
BspTI	CTTAAG	2 cut(s)	3029, 3701
BsrDI	GCAATG	9 cut(s)	135, 147, 432, 2004, 2018, 2624, 2971, 3078, 3634
BsrFI	RCCGGY	3 cut(s)	66, 302, 3177
BsrI	ACTGG	6 cut(s)	151, 159, 887, 1333, 3021, 3543
BssAI	RCCGGY	3 cut(s)	66, 302, 3177
BssECI	CCNNGG	6 cut(s)	540, 541, 983, 984, 2238, 2391
BssNAI	GTATAC	1 cut(s)	152
BssSI	CACGAG	1 cut(s)	366
BssT1I	CCWWGG	1 cut(s)	2391
Bst1107I	GTATAC	1 cut(s)	152
Bst2BI	CACGAG	1 cut(s)	366
Bst2UI	CCWGG	5 cut(s)	985, 1508, 1536, 1655, 2240
Bst6I	CTCTTC	4 cut(s)	924, 1159, 2442, 2946
BstAFI	CTTAAG	2 cut(s)	3029, 3701
BstAPI	GCANNNNNTGC	2 cut(s)	716, 1396
BstBAI	YACGTR	1 cut(s)	1433
BstC8I	GCNNGC	9 cut(s)	304, 362, 439, 679, 954, 2106, 2358, 3192, 3513
BstEII	GGTNACC	1 cut(s)	2768
BstENI	CCTNNNNNAGG	1 cut(s)	3242
BstF5I	GGATG	9 cut(s)	22, 1141, 1297, 1642, 1650, 1962, 3352, 3665, 3765
BstH2I	RGCGCY	2 cut(s)	2324, 3651
BstHHI	GCGC	3 cut(s)	2323, 2998, 3650
BstMAI	GTCTC	2 cut(s)	660, 2715
BstMCI	CGRYCG	1 cut(s)	71
BstNI	CCWGG	5 cut(s)	985, 1508, 1536, 1655, 2240
BstNSI	RCATGY	1 cut(s)	3185
BstPAI	GACNNNNGTC	1 cut(s)	3522
BstPI	GGTNACC	1 cut(s)	2768
BstSCI	CCNGG	7 cut(s)	540, 541, 983, 1506, 1534, 1653, 2238
BstSFI	CTRYAG	4 cut(s)	2348, 2556, 2733, 2874
BstV2I	GAAGAC	1 cut(s)	3639
BstX2I	RGATCY	3 cut(s)	1412, 2659, 3126
BstYI	RGATCY	3 cut(s)	1412, 2659, 3126
BstZ17I	GTATAC	1 cut(s)	152
BsuRI	GGCC	6 cut(s)	752, 1814, 2095, 2231, 2264, 3109
BtgZI	GCGATG	2 cut(s)	321, 691
BtsCI	GGATG	9 cut(s)	22, 1141, 1297, 1642, 1650, 1962, 3352, 3665, 3765
BtsI	GCAGTG	1 cut(s)	2342
BtsIMutI	CAGTG	9 cut(s)	753, 879, 894, 1056, 1308, 2198, 2342, 2565, 2935
BveI	ACCTGC	1 cut(s)	3016
Cac8I	GCNNGC	9 cut(s)	304, 362, 439, 679, 954, 2106, 2358, 3192, 3513
CciI	TCATGA	1 cut(s)	3172
CfoI	GCGC	3 cut(s)	2323, 2998, 3650
Cfr10I	RCCGGY	3 cut(s)	66, 302, 3177
Cfr13I	GGNCC	5 cut(s)	863, 2118, 2230, 2800, 3326
Cfr9I	CCCGGG	1 cut(s)	541
Csp6I	GTAC	7 cut(s)	810, 943, 1302, 1943, 2598, 3213, 3536
CviQI	GTAC	7 cut(s)	810, 943, 1302, 1943, 2598, 3213, 3536
DraI	TTTAAA	2 cut(s)	238, 1264
DraIII	CACNNNGTG	1 cut(s)	3343
DrdI	GACNNNNNNGTC	1 cut(s)	3182
DseDI	GACNNNNNNGTC	1 cut(s)	3182
EaeI	YGGCCR	1 cut(s)	2262
Eam1104I	CTCTTC	4 cut(s)	924, 1159, 2442, 2946
EarI	CTCTTC	4 cut(s)	924, 1159, 2442, 2946
Ecl136II	GAGCTC	1 cut(s)	1315
Eco130I	CCWWGG	1 cut(s)	2391
Eco24I	GRGCYC	1 cut(s)	1317
Eco32I	GATATC	1 cut(s)	580
Eco47I	GGWCC	4 cut(s)	863, 2118, 2800, 3326
Eco47III	AGCGCT	2 cut(s)	2322, 3649
Eco53kI	GAGCTC	1 cut(s)	1315
Eco57I	CTGAAG	1 cut(s)	1734
Eco88I	CYCGRG	1 cut(s)	541
Eco91I	GGTNACC	1 cut(s)	2768
EcoICRI	GAGCTC	1 cut(s)	1315
EcoNI	CCTNNNNNAGG	1 cut(s)	3242
EcoO109I	RGGNCCY	1 cut(s)	2118
EcoO65I	GGTNACC	1 cut(s)	2768
EcoRI	GAATTC	1 cut(s)	2125
EcoRII	CCWGG	5 cut(s)	983, 1506, 1534, 1653, 2238
EcoRV	GATATC	1 cut(s)	580
EcoT14I	CCWWGG	1 cut(s)	2391
EcoT22I	ATGCAT	1 cut(s)	707
EcoT38I	GRGCYC	1 cut(s)	1317
ErhI	CCWWGG	1 cut(s)	2391
FaqI	GGGAC	5 cut(s)	869, 966, 1896, 2131, 3764
FauNDI	CATATG	2 cut(s)	2223, 2743
FbaI	TGATCA	3 cut(s)	3280, 3306, 3466
FblI	GTMKAC	2 cut(s)	151, 1895
FokI	GGATG	9 cut(s)	29, 1148, 1304, 1629, 1637, 1969, 3359, 3652, 3752
FriOI	GRGCYC	1 cut(s)	1317
FspBI	CTAG	6 cut(s)	254, 959, 1665, 2429, 3398, 3461
GlaI	GCGC	3 cut(s)	2322, 2997, 3649
GsaI	CCCAGC	2 cut(s)	2117, 3053
GsuI	CTGGAG	1 cut(s)	176
HaeII	RGCGCY	2 cut(s)	2324, 3651
HaeIII	GGCC	6 cut(s)	752, 1814, 2095, 2231, 2264, 3109
HapII	CCGG	4 cut(s)	67, 303, 542, 3178
HhaI	GCGC	3 cut(s)	2323, 2998, 3650
Hin6I	GCGC	3 cut(s)	2321, 2996, 3648
HinP1I	GCGC	3 cut(s)	2321, 2996, 3648
HincII	GTYRAC	2 cut(s)	1896, 2067
HindII	GTYRAC	2 cut(s)	1896, 2067
HindIII	AAGCTT	3 cut(s)	724, 1548, 3509
HinfI	GANTC	8 cut(s)	369, 805, 1369, 2210, 2432, 2699, 3421, 3551
HpaII	CCGG	4 cut(s)	67, 303, 542, 3178
HphI	GGTGA	4 cut(s)	1745, 1916, 2159, 2549
Hpy166II	GTNNAC	5 cut(s)	152, 1736, 1896, 2067, 3388
Hpy8I	GTNNAC	5 cut(s)	152, 1736, 1896, 2067, 3388
Hpy99I	CGWCG	1 cut(s)	66
HpyCH4IV	ACGT	1 cut(s)	1432
HpySE526I	ACGT	1 cut(s)	1432
HspAI	GCGC	3 cut(s)	2321, 2996, 3648
KflI	GGGWCCC	1 cut(s)	2118
KroI	GCCGGC	1 cut(s)	302
KroNI	GCCGGC	1 cut(s)	304
Ksp22I	TGATCA	3 cut(s)	3280, 3306, 3466
LguI	GCTCTTC	2 cut(s)	924, 1159
LmnI	GCTCC	2 cut(s)	343, 3767
MaeI	CTAG	6 cut(s)	254, 959, 1665, 2429, 3398, 3461
MaeII	ACGT	1 cut(s)	1432
MaeIII	GTNAC	8 cut(s)	428, 1040, 1336, 1556, 1694, 1705, 1821, 2768
MfeI	CAATTG	2 cut(s)	2280, 3660
MflI	RGATCY	3 cut(s)	1412, 2659, 3126
MhlI	GDGCHC	4 cut(s)	120, 554, 649, 1317
MlyI	GAGTC	5 cut(s)	378, 799, 1378, 2426, 2708
Mph1103I	ATGCAT	1 cut(s)	707
MroNI	GCCGGC	1 cut(s)	302
MroXI	GAANNNNTTC	4 cut(s)	765, 933, 966, 1014
MslI	CAYNNNNRTG	6 cut(s)	140, 446, 2258, 2629, 3379, 3474
MspA1I	CMGCKG	6 cut(s)	1152, 1712, 1985, 3053, 3197, 3533
MspCI	CTTAAG	2 cut(s)	3029, 3701
MspI	CCGG	4 cut(s)	67, 303, 542, 3178
MspR9I	CCNGG	7 cut(s)	542, 543, 985, 1508, 1536, 1655, 2240
MunI	CAATTG	2 cut(s)	2280, 3660
Mva1269I	GAATGC	1 cut(s)	2072
MvaI	CCWGG	5 cut(s)	985, 1508, 1536, 1655, 2240
NaeI	GCCGGC	1 cut(s)	304
NciI	CCSGG	2 cut(s)	542, 543
NdeI	CATATG	2 cut(s)	2223, 2743
NgoMIV	GCCGGC	1 cut(s)	302
NlaIV	GGNNCC	4 cut(s)	865, 2119, 2120, 3021
NmuCI	GTSAC	5 cut(s)	428, 1336, 1556, 1705, 1821
NsiI	ATGCAT	1 cut(s)	707
NspI	RCATGY	1 cut(s)	3185
PacI	TTAATTAA	1 cut(s)	2334
PagI	TCATGA	1 cut(s)	3172
PasI	CCCWGGG	1 cut(s)	984
PciSI	GCTCTTC	2 cut(s)	924, 1159
PctI	GAATGC	1 cut(s)	2072
PdiI	GCCGGC	1 cut(s)	304
PdmI	GAANNNNTTC	4 cut(s)	765, 933, 966, 1014
PfeI	GAWTC	3 cut(s)	2210, 3421, 3551
PflFI	GACNNNGTC	1 cut(s)	881
PflMI	CCANNNNNTGG	1 cut(s)	2285
PfoI	TCCNGGA	1 cut(s)	1534
PleI	GAGTC	5 cut(s)	377, 799, 1377, 2426, 2707
PpsI	GAGTC	5 cut(s)	377, 799, 1377, 2426, 2707
Ppu21I	YACGTR	1 cut(s)	1433
PpuMI	RGGWCCY	1 cut(s)	2118
PshAI	GACNNNNGTC	1 cut(s)	3522
PshBI	ATTAAT	6 cut(s)	897, 1193, 1250, 1359, 1419, 2330
Psp124BI	GAGCTC	1 cut(s)	1317
Psp5II	RGGWCCY	1 cut(s)	2118
Psp6I	CCWGG	5 cut(s)	983, 1506, 1534, 1653, 2238
PspEI	GGTNACC	1 cut(s)	2768
PspFI	CCCAGC	2 cut(s)	2113, 3049
PspGI	CCWGG	5 cut(s)	983, 1506, 1534, 1653, 2238
PspN4I	GGNNCC	4 cut(s)	865, 2119, 2120, 3021
PspPI	GGNCC	5 cut(s)	863, 2118, 2230, 2800, 3326
PspPPI	RGGWCCY	1 cut(s)	2118
PstI	CTGCAG	1 cut(s)	2737
PsuI	RGATCY	3 cut(s)	1412, 2659, 3126
PsyI	GACNNNGTC	1 cut(s)	881
PvuII	CAGCTG	6 cut(s)	1152, 1712, 1985, 3053, 3197, 3533
RsaI	GTAC	7 cut(s)	811, 944, 1303, 1944, 2599, 3214, 3537
RsaNI	GTAC	7 cut(s)	810, 943, 1302, 1943, 2598, 3213, 3536
RseI	CAYNNNNRTG	6 cut(s)	140, 446, 2258, 2629, 3379, 3474
SacI	GAGCTC	1 cut(s)	1317
SalI	GTCGAC	1 cut(s)	1894
SapI	GCTCTTC	2 cut(s)	924, 1159
Sau96I	GGNCC	5 cut(s)	863, 2118, 2230, 2800, 3326
ScaI	AGTACT	1 cut(s)	1303
SchI	GAGTC	5 cut(s)	378, 799, 1378, 2426, 2708
ScrFI	CCNGG	7 cut(s)	542, 543, 985, 1508, 1536, 1655, 2240
SduI	GDGCHC	4 cut(s)	120, 554, 649, 1317
SfcI	CTRYAG	4 cut(s)	2348, 2556, 2733, 2874
SinI	GGWCC	4 cut(s)	863, 2118, 2800, 3326
SmaI	CCCGGG	1 cut(s)	543
SmiMI	CAYNNNNRTG	6 cut(s)	140, 446, 2258, 2629, 3379, 3474
SmlI	CTYRAG	5 cut(s)	775, 1094, 3029, 3356, 3701
SmoI	CTYRAG	5 cut(s)	775, 1094, 3029, 3356, 3701
SsiI	CCGC	7 cut(s)	515, 1187, 2023, 2762, 3037, 3643, 3684
SspI	AATATT	5 cut(s)	274, 817, 2689, 2758, 2783
SspMI	CTAG	6 cut(s)	254, 959, 1665, 2429, 3398, 3461
SstI	GAGCTC	1 cut(s)	1317
StyD4I	CCNGG	7 cut(s)	540, 541, 983, 1506, 1534, 1653, 2238
StyI	CCWWGG	1 cut(s)	2391
TaiI	ACGT	1 cut(s)	1435
TaqI	TCGA	6 cut(s)	114, 269, 1895, 1975, 2697, 2718
TatI	WGTACW	6 cut(s)	942, 1301, 1942, 2597, 3212, 3535
TauI	GCSGC	1 cut(s)	1190
TfiI	GAWTC	3 cut(s)	2210, 3421, 3551
TscAI	CASTG	9 cut(s)	760, 886, 894, 1063, 1315, 2205, 2349, 2565, 2942
TseFI	GTSAC	5 cut(s)	428, 1336, 1556, 1705, 1821
Tsp45I	GTSAC	5 cut(s)	428, 1336, 1556, 1705, 1821
TspGWI	ACGGA	3 cut(s)	1148, 1733, 2095
TspMI	CCCGGG	1 cut(s)	541
TspRI	CASTG	9 cut(s)	760, 886, 894, 1063, 1315, 2205, 2349, 2565, 2942
Tth111I	GACNNNGTC	1 cut(s)	881
Van91I	CCANNNNNTGG	1 cut(s)	2285
Vha464I	CTTAAG	2 cut(s)	3029, 3701
VpaK11BI	GGWCC	4 cut(s)	863, 2118, 2800, 3326
VspI	ATTAAT	6 cut(s)	897, 1193, 1250, 1359, 1419, 2330
XagI	CCTNNNNNAGG	1 cut(s)	3242
XapI	RAATTY	5 cut(s)	102, 1011, 2125, 2577, 2920
XbaI	TCTAGA	2 cut(s)	253, 3460
XceI	RCATGY	1 cut(s)	3185
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1876
XmaI	CCCGGG	1 cut(s)	541
XmiI	GTMKAC	2 cut(s)	151, 1895
XmnI	GAANNNNTTC	4 cut(s)	765, 933, 966, 1014
XspI	CTAG	6 cut(s)	254, 959, 1665, 2429, 3398, 3461
ZrmI	AGTACT	1 cut(s)	1303
Zsp2I	ATGCAT	1 cut(s)	707

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.