Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0007920

Physical Location & Seq

Genomic Coordinates Forward (+)

68128815 .. 68137145

Gene Structure 8331 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG466900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3654 bp

ATGGCGAACATTGCAATGACTGGTATACTGGAGAAGATGACGGGGAAGGATAAGGATTATAGATACATGGCAACATCTGATTTGTTGAACGAATTAAACAAAGACAATTTTAAAGCCGATGCTGATCTAGAGATAAAGTTGTCGAATATTATTATTCAGCAACTTGATGATGTTGCCGGCGATGTATCTGGATTGGCTGTCAAATGTCTTGCTCCATTAGTTAAGAAGGTCAGCGAGCCACGAGTCGTGGAGATGACAAATAAACTTTGTGAGAAATTGCTAAAGGAGAAGGATCAACATCGTGACATTGCCAGCATAGCTATGAAGGCTATTGTTGCAGAAGTTTCTACTCAATCACTTGCACAGTCTATTCTTGTGTCTATTTTACCGCAGTTGATTAAAGGAATTACTGCCCCGGGAATGAGCACAGAGATAAAATGTGAATGTCTTGATATCTTATGTGATGTCCTTCATAAGTTTGGCAATCTTATGGCAACCGAACATGAGCTGCTATTAGGTGCTCTCTTGTCTCAGTTGAGTTCCAATCAAGCCAGCGTGAGGAAGAAAACTGTCTCATGCATCGCATCACTTGCTTCAAGCTTGTCAGACGATTTGTTGGCAAGGGCCACTGTTGAAGTTGTTCAGAACTTGAGAAATAAAGGCATGAAGTCTGAAATGACTCGTACAAATATTCAGATGATTGGTGCTTTAAGTCGTGCTGTTGGCTATCGTTTTGGACCCCATCTTGCTGACACTGTGCCAGTGCTAATTAATTATTGCACAAGTGCATCTGAGAATGATGAAGAGCTTCGTGAGTACAGTTTGCAGGCACTAGAAAGTTTTCTGCTTAGGTGTCCCAGGGATATTTCTTCCTATTGTGATGAAATTCTTCATCTTAACTTGGAGTATCTGAGTTACGACCCAAACTTCACTGATAACATGGAAGAAGATACTGATGATGAAACTCTTGAGGAGGAGGAAGATGATGAGAGTGCGAATGAATATACGGATGATGAAGATGTCAGTTGGAAAGTCCGAAGAGCAGCAGCTAAATGCTTAGCGGCATTAATTGTATCTCGTCCTGAGATGCTTACCAAGCTGTATGAGGAGGCTTGTCCAAAATTAATTGAGAGATTTAAAGAGAGGGAAGAAAATGTCAAGATGGATGTTTTCAGTACTTTCACTGAGCTCTTGCAGCAAACTGGAAATGTCACAAAGGGTCAGATTGATATTAATGAACAGAGTCCAAGATGGTTATTGAAGCAAGAAGTGCCAAAGATCGTCAGATCTATTAATAGGCAACTACGTGAGAAATCTATCAAGACGAAGGTTGGTGCATTTTCTGTATTGAAAGAACTTGTGGTGGTCTTGCCAGATTGCCTGGCTGATCAAATTGGCTCACTCATTCCAGGAATTGAGAAAGCTTTAAGTGACAAGTCCTCTACCTCCAATTTGAAGATTGAAGCTCTTATATTTACAAGATTGGTGTTGGCTTCCCATTCTCCTTCTGTTTTCCATCCTTACATCCAGGCTCTCTCTAGTCCTGTTTTATCTGCTGTGGCAGAGCGTTACTACAAAGTCACAGCTGAAGCACTTAGGGTCTGTGGTGAACTTGTCCGTGTTGTTCGCCCAAATATTGAGGGGATTGGTTTTGATTTCAAACCTTATGTTCAACCAATATATAAGGCCATAATGTCACGCTTGACAAACCAAGATCAAGATCAGGAGGTAAAAGAATGTGCTATATCTTGCATGGGACTACTTGTGTCGACATTTGGTGATAACCTCAATGCTGAATTACCTGTGTGCCTTCCTGTACTTGTTGATCGGATGGGAAATGAGATCACTCGACTTACAGCTGTGAAGGCATTTGCTGTCATTGCTTCTTCCCCATTGCGGATAGACCTGTCTTGTGTTTTGGATCAAGTGATTGCAGAGTTGACTGCATTCTTACGGAAGGCTAATCGGCCTCTAAGGCAGGCAACACTGGGGACCCTGAATTCCCTGATTGTTGCCTATGGCGATAAAATCGGTCCATCAGCTTATGAAGTTATTATTGTTGAACTTGCAACACTGATAAGTGATTCAGACTTGCATATGACGGCCCTTGCCCTGGAACTTTGCTGCACCTTGATGGCCGACAGGTCAAGCCCAGTTGTTGGTTTGGCTGTTAGAAATAAAGTTCTTCCGCAAGCGCTAACATTAATTAAAAGCTCACTGTTACAGGGCCAAGCTCTATTGGCTTTGCAAAACTTCTTTGCTTCCTTGGTGTATTCTGCAAATACAAGTTTTGATGCCTTGCTAGACTCTCTTCTATCAAGTGCTAAACCATCTCCTCAGTCTGGTGGGGTTGCAAAACAAGCTCTATATTCAATAGCTCAATGCGTGGCTGTCCTTTGTCTTGCTGCTGGTGATGAGAAATGTTCATCTACAGTGCAAATGCTTACCGAAATTCTCAAACATGACAGCAGTACAAACTCGGCTAAGCAGCATCTTGCATTGCTATGTCTTGGGGAGATTGGGAGAAGGAAAGATCTAAGCTCTCATGCCCATATTGAGAATATTGTCATCGAGTCATTTCAGTCTCCTTTCGAGGAGATTAAGTCTGCAGCCTCATATGCTCTTGGCAATATTGCAGTTGGTAACCTATTCAAATATTTGCCTTTTATCTTGGACCAGATTGATAATCAGCAGAAAAAACAGTATCTCTTGCTTCATTCTTTGAAAGAGGTCATAGTAAGGCAATCTGTAGATAAAGCTGAGTTTCAGGACAGTAGTGTTGAAAAAATACTAAATTTACTTTTTAATCACTGTGAAAGTGAGGAAGAGGGTGTTCGCAATGTGGTCGCTGAATGTCTGGGTAAAATTGCGCTTATTGAACCTGCAAAACTGGTTCCTGCACTTAAGGTGCGGACAACCAGCCCAGCTGCTTTCACAAGAGCTACGGTTGTCATTGCAGTCAAGTATTCAGTAGTGGAGAGGCCAGAGAAGATAGACGAGATCTTATATCTTGAAATCTCATCATTCCTGATGCTTATTAAGGATCATGATCGGCATGTCAGGCGTGCCGCTGTGTTGGCTTTAAGTACATTCGCCCATAATAAGCCAAACCTCATCAAGGGGCTTCTGCCAGAATTGTTGCCACTTCTTTATGATCAGACTGTTATCAAGAAAGAATTGATCAGGACAGTTGATCTTGGTCCTTTTAAGCACATTGTGGATGATGGGCTTGAGTTAAGGAAGGCTGCATTTGAATGTGTGGACACATTACTAGATAGTTGTCTTGACCAAGTGAATCCTTCATCATTTATTGTTCCTTACCTCAAATCTGGTCTAGCTGATCATTATGATGTTAAGATGCCTTGCCATCTTATCCTCTCAAAGCTTGCAGACAAGTGTCCATCAGCTGTACTGGCAGTATTGGATTCATTGGTGGATCATCTCCAAAAAACCATCAACTTTAAGCCAAAGCAAGATGCTGTAAAGCAAGAAGTAGATCGCAATGAAGACATGATCCGCAGCGCTCTAAGAACAATTGCATCCTTGCATCGTATAAGCGGTGGAGATTGCAGCCTTAAGTTCAAGAACCTTATGAATGAAATATCAAAAACTCCTGCACTCTGGGACAAGTATTGCTCCATCCGAAATGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0006464 GO:0006807 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009733 GO:0009791 GO:0009987 GO:0010033 GO:0010051 GO:0010228 GO:0010265 GO:0016020 GO:0016043 GO:0016567 GO:0019538 GO:0022414 GO:0022607 GO:0030312 GO:0032446 GO:0032501 GO:0032502 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061458 GO:0065003 GO:0070647 GO:0071704 GO:0071840 GO:0071944 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TIP120

Protein Analysis

1217

Amino Acids

134.67

Weight (kDa)

5.57

Isoelectric Point (pI)

49.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_CAND1	PF25782	460 - 585	7.8e-48	CAND1-like, TPR repeats
TIP120	PF08623	1038 - 1201	1.5e-55	TATA-binding protein interacting (TIP20)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007920)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G02560 AT2G02560
fragaria_vesca	FvH4_7g33400 FvH4_7g33400
malus_domestica	MD01G1232300.v1.1 MD07G1304100.v1.1
prunus_persica	Prupe.2G322700_v2.0.a1 Prupe.2G322700_v2.0.a1 Prupe.2G322700_v2.0.a1
pyrus_communis	pycom01g24070 pycom07g27710
rosa_chinensis	RchiOBHm_Chr1g0383371
rosa_laevigata	RLG00000026107
rosa_multiflora	Rmu_co8130632.1_g000001 Rmu_sc0007173.1_g000011 Rmu_sc0019557.1_g000001 Rmu_sc0020036.1_g000001
rosa_roxburghii	Rroxscaffold_4G00277350
rosa_rugosa	Rorug01G0441000
rosa_samantha	Rh1AG466900 Rh1BG424200 Rh1CG437300 Rh1DG456900
rosa_wichuraiana	Rw1G040570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	2890
AccB7I	CCANNNNNTGG	1 cut(s)	2159
AccI	GTMKAC	2 cut(s)	25, 1769
AciI	CCGC	8 cut(s)	389, 1061, 1897, 2189, 2911, 3069, 3517, 3558
AclWI	GGATC	5 cut(s)	300, 1929, 3051, 3444, 3508
AcoI	YGGCCR	1 cut(s)	2136
AcsI	RAATTY	4 cut(s)	885, 1999, 2451, 2794
AcuI	CTGAAG	1 cut(s)	1608
AdeI	CACNNNGTG	1 cut(s)	3217
AfaI	GTAC	7 cut(s)	685, 818, 1177, 1818, 2473, 3088, 3411
AfeI	AGCGCT	2 cut(s)	2196, 3523
AfiI	CCNNNNNNNGG	6 cut(s)	558, 1896, 2113, 2159, 2342, 3118
AflII	CTTAAG	2 cut(s)	2903, 3575
AjnI	CCWGG	5 cut(s)	857, 1380, 1408, 1527, 2112
Alw21I	GWGCWC	3 cut(s)	428, 523, 1191
Alw26I	GTCTC	3 cut(s)	534, 577, 2589
AlwI	GGATC	5 cut(s)	300, 1929, 3051, 3444, 3508
Ama87I	CYCGRG	1 cut(s)	415
Aor51HI	AGCGCT	2 cut(s)	2196, 3523
AoxI	GGCC	7 cut(s)	624, 1686, 1967, 2103, 2136, 2227, 2981
ApoI	RAATTY	4 cut(s)	885, 1999, 2451, 2794
AseI	ATTAAT	6 cut(s)	771, 1067, 1124, 1233, 1293, 2204
Asp700I	GAANNNNTTC	4 cut(s)	639, 807, 840, 888
AspLEI	GCGC	3 cut(s)	2197, 2872, 3524
AspS9I	GGNCC	8 cut(s)	624, 737, 1992, 2033, 2104, 2227, 2674, 3200
AsuC2I	CCSGG	2 cut(s)	416, 417
AsuHPI	GGTGA	3 cut(s)	1619, 1790, 2423
AvaI	CYCGRG	1 cut(s)	415
AvaII	GGWCC	5 cut(s)	737, 1992, 2033, 2674, 3200
BanII	GRGCYC	1 cut(s)	1191
BauI	CACGAG	1 cut(s)	240
BbsI	GAAGAC	1 cut(s)	3513
Bbv12I	GWGCWC	3 cut(s)	428, 523, 1191
BceAI	ACGGC	1 cut(s)	2118
BcgI	CGANNNNNNTGC	2 cut(s)	2827, 2861
BciT130I	CCWGG	5 cut(s)	859, 1382, 1410, 1529, 2114
BclI	TGATCA	4 cut(s)	1387, 3154, 3180, 3340
BcnI	CCSGG	2 cut(s)	416, 417
BcoDI	GTCTC	3 cut(s)	534, 577, 2589
BfaI	CTAG	6 cut(s)	128, 833, 1539, 2303, 3272, 3335
BfmI	CTRYAG	3 cut(s)	2430, 2607, 2748
BfoI	RGCGCY	2 cut(s)	2198, 3525
BfrI	CTTAAG	2 cut(s)	2903, 3575
BfuAI	ACCTGC	1 cut(s)	2890
BglI	GCCNNNNNGGC	1 cut(s)	1975
BglII	AGATCT	3 cut(s)	1286, 2533, 3000
BlpI	GCTNAGC	2 cut(s)	1057, 2484
BmcAI	AGTACT	1 cut(s)	1177
Bme1390I	CCNGG	7 cut(s)	416, 417, 859, 1382, 1410, 1529, 2114
Bme18I	GGWCC	5 cut(s)	737, 1992, 2033, 2674, 3200
BmeT110I	CYCGRG	1 cut(s)	415
BmgT120I	GGNCC	8 cut(s)	624, 737, 1992, 2033, 2104, 2227, 2674, 3200
BmiI	GGNNCC	4 cut(s)	739, 1993, 1994, 2895
BmrFI	CCNGG	7 cut(s)	416, 417, 859, 1382, 1410, 1529, 2114
BmrI	ACTGGG	2 cut(s)	1997, 2147
BmuI	ACTGGG	2 cut(s)	1997, 2147
BoxI	GACNNNNGTC	1 cut(s)	3396
BpiI	GAAGAC	1 cut(s)	3513
BpmI	CTGGAG	1 cut(s)	50
Bpu10I	CCTNAGC	1 cut(s)	848
Bpu1102I	GCTNAGC	2 cut(s)	1057, 2484
BpuEI	CTTGAG	3 cut(s)	670, 989, 3251
BpuMI	CCSGG	2 cut(s)	416, 417
BsaAI	YACGTR	1 cut(s)	1307
BsaBI	GATNNNNATC	4 cut(s)	123, 297, 1719, 3048
BsaJI	CCNNGG	6 cut(s)	414, 415, 857, 858, 2112, 2265
BsaXI	ACNNNNNCTCC	2 cut(s)	2588, 2618
Bsc4I	CCNNNNNNNGG	6 cut(s)	558, 1896, 2113, 2159, 2342, 3118
Bse118I	RCCGGY	1 cut(s)	176
Bse1I	ACTGG	8 cut(s)	25, 33, 761, 1207, 1992, 2153, 2895, 3417
Bse3DI	GCAATG	9 cut(s)	9, 21, 306, 1878, 1892, 2498, 2845, 2952, 3508
Bse8I	GATNNNNATC	4 cut(s)	123, 297, 1719, 3048
BseBI	CCWGG	5 cut(s)	859, 1382, 1410, 1529, 2114
BseDI	CCNNGG	6 cut(s)	414, 415, 857, 858, 2112, 2265
BseGI	GGATG	8 cut(s)	1015, 1171, 1516, 1524, 1836, 3226, 3539, 3639
BseJI	GATNNNNATC	4 cut(s)	123, 297, 1719, 3048
BseLI	CCNNNNNNNGG	6 cut(s)	558, 1896, 2113, 2159, 2342, 3118
BseMI	GCAATG	9 cut(s)	9, 21, 306, 1878, 1892, 2498, 2845, 2952, 3508
BseMII	CTCAG	7 cut(s)	545, 783, 902, 1074, 1176, 2351, 2751
BseNI	ACTGG	8 cut(s)	25, 33, 761, 1207, 1992, 2153, 2895, 3417
BseRI	GAGGAG	5 cut(s)	986, 989, 1121, 2325, 2609
BseYI	CCCAGC	1 cut(s)	2923
BsgI	GTGCAG	3 cut(s)	2110, 2883, 3600
BshFI	GGCC	7 cut(s)	626, 1688, 1969, 2105, 2138, 2229, 2983
BsiHKAI	GWGCWC	3 cut(s)	428, 523, 1191
BsiHKCI	CYCGRG	1 cut(s)	415
BsiSI	CCGG	2 cut(s)	177, 416
BslFI	GGGAC	4 cut(s)	840, 1770, 2005, 3638
BslI	CCNNNNNNNGG	6 cut(s)	558, 1896, 2113, 2159, 2342, 3118
BsmAI	GTCTC	3 cut(s)	534, 577, 2589
BsmFI	GGGAC	4 cut(s)	840, 1770, 2005, 3638
BsmI	GAATGC	1 cut(s)	1946
BsnI	GGCC	7 cut(s)	626, 1688, 1969, 2105, 2138, 2229, 2983
BsoBI	CYCGRG	1 cut(s)	415
Bsp1286I	GDGCHC	3 cut(s)	428, 523, 1191
Bsp1720I	GCTNAGC	2 cut(s)	1057, 2484
BspACI	CCGC	8 cut(s)	389, 1061, 1897, 2189, 2911, 3069, 3517, 3558
BspANI	GGCC	7 cut(s)	626, 1688, 1969, 2105, 2138, 2229, 2983
BspCNI	CTCAG	7 cut(s)	544, 784, 903, 1075, 1177, 2350, 2752
BspHI	TCATGA	1 cut(s)	3046
BspLI	GGNNCC	4 cut(s)	739, 1993, 1994, 2895
BspMAI	CTGCAG	1 cut(s)	2611
BspMI	ACCTGC	1 cut(s)	2890
BspPI	GGATC	5 cut(s)	300, 1929, 3051, 3444, 3508
BspQI	GCTCTTC	2 cut(s)	798, 1033
BspTI	CTTAAG	2 cut(s)	2903, 3575
BsrDI	GCAATG	9 cut(s)	9, 21, 306, 1878, 1892, 2498, 2845, 2952, 3508
BsrFI	RCCGGY	1 cut(s)	176
BsrI	ACTGG	8 cut(s)	25, 33, 761, 1207, 1992, 2153, 2895, 3417
BssAI	RCCGGY	1 cut(s)	176
BssECI	CCNNGG	6 cut(s)	414, 415, 857, 858, 2112, 2265
BssNAI	GTATAC	1 cut(s)	26
BssSI	CACGAG	1 cut(s)	240
BssT1I	CCWWGG	1 cut(s)	2265
Bst1107I	GTATAC	1 cut(s)	26
Bst2BI	CACGAG	1 cut(s)	240
Bst2UI	CCWGG	5 cut(s)	859, 1382, 1410, 1529, 2114
Bst6I	CTCTTC	4 cut(s)	798, 1033, 2316, 2820
BstAFI	CTTAAG	2 cut(s)	2903, 3575
BstAPI	GCANNNNNTGC	2 cut(s)	590, 1270
BstBAI	YACGTR	1 cut(s)	1307
BstC8I	GCNNGC	9 cut(s)	178, 236, 313, 553, 828, 1980, 2193, 3066, 3387
BstEII	GGTNACC	1 cut(s)	2642
BstENI	CCTNNNNNAGG	1 cut(s)	3116
BstF5I	GGATG	8 cut(s)	1015, 1171, 1516, 1524, 1836, 3226, 3539, 3639
BstH2I	RGCGCY	2 cut(s)	2198, 3525
BstHHI	GCGC	3 cut(s)	2197, 2872, 3524
BstMAI	GTCTC	3 cut(s)	534, 577, 2589
BstNI	CCWGG	5 cut(s)	859, 1382, 1410, 1529, 2114
BstNSI	RCATGY	1 cut(s)	3059
BstPAI	GACNNNNGTC	1 cut(s)	3396
BstPI	GGTNACC	1 cut(s)	2642
BstSCI	CCNGG	7 cut(s)	414, 415, 857, 1380, 1408, 1527, 2112
BstSFI	CTRYAG	3 cut(s)	2430, 2607, 2748
BstV2I	GAAGAC	1 cut(s)	3513
BstX2I	RGATCY	3 cut(s)	1286, 2533, 3000
BstYI	RGATCY	3 cut(s)	1286, 2533, 3000
BstZ17I	GTATAC	1 cut(s)	26
BsuRI	GGCC	7 cut(s)	626, 1688, 1969, 2105, 2138, 2229, 2983
BtgZI	GCGATG	2 cut(s)	195, 565
BtsCI	GGATG	8 cut(s)	1015, 1171, 1516, 1524, 1836, 3226, 3539, 3639
BveI	ACCTGC	1 cut(s)	2890
Cac8I	GCNNGC	9 cut(s)	178, 236, 313, 553, 828, 1980, 2193, 3066, 3387
CciI	TCATGA	1 cut(s)	3046
CfoI	GCGC	3 cut(s)	2197, 2872, 3524
Cfr10I	RCCGGY	1 cut(s)	176
Cfr13I	GGNCC	8 cut(s)	624, 737, 1992, 2033, 2104, 2227, 2674, 3200
Cfr9I	CCCGGG	1 cut(s)	415
Csp6I	GTAC	7 cut(s)	684, 817, 1176, 1817, 2472, 3087, 3410
CviQI	GTAC	7 cut(s)	684, 817, 1176, 1817, 2472, 3087, 3410
DraI	TTTAAA	2 cut(s)	112, 1138
DraIII	CACNNNGTG	1 cut(s)	3217
EaeI	YGGCCR	1 cut(s)	2136
Eam1104I	CTCTTC	4 cut(s)	798, 1033, 2316, 2820
EarI	CTCTTC	4 cut(s)	798, 1033, 2316, 2820
Ecl136II	GAGCTC	1 cut(s)	1189
Eco130I	CCWWGG	1 cut(s)	2265
Eco24I	GRGCYC	1 cut(s)	1191
Eco32I	GATATC	1 cut(s)	454
Eco47I	GGWCC	5 cut(s)	737, 1992, 2033, 2674, 3200
Eco47III	AGCGCT	2 cut(s)	2196, 3523
Eco53kI	GAGCTC	1 cut(s)	1189
Eco57I	CTGAAG	1 cut(s)	1608
Eco88I	CYCGRG	1 cut(s)	415
Eco91I	GGTNACC	1 cut(s)	2642
EcoICRI	GAGCTC	1 cut(s)	1189
EcoNI	CCTNNNNNAGG	1 cut(s)	3116
EcoO109I	RGGNCCY	1 cut(s)	1992
EcoO65I	GGTNACC	1 cut(s)	2642
EcoRI	GAATTC	1 cut(s)	1999
EcoRII	CCWGG	5 cut(s)	857, 1380, 1408, 1527, 2112
EcoRV	GATATC	1 cut(s)	454
EcoT14I	CCWWGG	1 cut(s)	2265
EcoT22I	ATGCAT	1 cut(s)	581
EcoT38I	GRGCYC	1 cut(s)	1191
ErhI	CCWWGG	1 cut(s)	2265
FaqI	GGGAC	4 cut(s)	840, 1770, 2005, 3638
FauNDI	CATATG	2 cut(s)	2097, 2617
FbaI	TGATCA	4 cut(s)	1387, 3154, 3180, 3340
FblI	GTMKAC	2 cut(s)	25, 1769
FokI	GGATG	8 cut(s)	1022, 1178, 1503, 1511, 1843, 3233, 3526, 3626
FriOI	GRGCYC	1 cut(s)	1191
FspBI	CTAG	6 cut(s)	128, 833, 1539, 2303, 3272, 3335
GlaI	GCGC	3 cut(s)	2196, 2871, 3523
GsaI	CCCAGC	1 cut(s)	2927
GsuI	CTGGAG	1 cut(s)	50
HaeII	RGCGCY	2 cut(s)	2198, 3525
HaeIII	GGCC	7 cut(s)	626, 1688, 1969, 2105, 2138, 2229, 2983
HapII	CCGG	2 cut(s)	177, 416
HhaI	GCGC	3 cut(s)	2197, 2872, 3524
Hin6I	GCGC	3 cut(s)	2195, 2870, 3522
HinP1I	GCGC	3 cut(s)	2195, 2870, 3522
HincII	GTYRAC	2 cut(s)	1770, 1941
HindII	GTYRAC	2 cut(s)	1770, 1941
HindIII	AAGCTT	3 cut(s)	598, 1422, 3383
HinfI	GANTC	8 cut(s)	243, 679, 1243, 2084, 2306, 2573, 3295, 3425
HpaII	CCGG	2 cut(s)	177, 416
HphI	GGTGA	3 cut(s)	1619, 1790, 2423
Hpy166II	GTNNAC	5 cut(s)	26, 1610, 1770, 1941, 3262
Hpy8I	GTNNAC	5 cut(s)	26, 1610, 1770, 1941, 3262
HpyCH4IV	ACGT	1 cut(s)	1306
HpySE526I	ACGT	1 cut(s)	1306
HspAI	GCGC	3 cut(s)	2195, 2870, 3522
KflI	GGGWCCC	1 cut(s)	1992
KroI	GCCGGC	1 cut(s)	176
KroNI	GCCGGC	1 cut(s)	178
Ksp22I	TGATCA	4 cut(s)	1387, 3154, 3180, 3340
LguI	GCTCTTC	2 cut(s)	798, 1033
LmnI	GCTCC	2 cut(s)	217, 3641
MaeI	CTAG	6 cut(s)	128, 833, 1539, 2303, 3272, 3335
MaeII	ACGT	1 cut(s)	1306
MaeIII	GTNAC	9 cut(s)	302, 914, 1210, 1430, 1568, 1579, 1695, 2220, 2642
MfeI	CAATTG	1 cut(s)	3534
MflI	RGATCY	3 cut(s)	1286, 2533, 3000
MhlI	GDGCHC	3 cut(s)	428, 523, 1191
MlyI	GAGTC	5 cut(s)	252, 673, 1252, 2300, 2582
MmeI	TCCRAC	1 cut(s)	1007
Mph1103I	ATGCAT	1 cut(s)	581
MroNI	GCCGGC	1 cut(s)	176
MroXI	GAANNNNTTC	4 cut(s)	639, 807, 840, 888
MslI	CAYNNNNRTG	6 cut(s)	14, 320, 2132, 2503, 3253, 3348
MspA1I	CMGCKG	5 cut(s)	1586, 1859, 2927, 3071, 3407
MspCI	CTTAAG	2 cut(s)	2903, 3575
MspI	CCGG	2 cut(s)	177, 416
MspR9I	CCNGG	7 cut(s)	416, 417, 859, 1382, 1410, 1529, 2114
MunI	CAATTG	1 cut(s)	3534
Mva1269I	GAATGC	1 cut(s)	1946
MvaI	CCWGG	5 cut(s)	859, 1382, 1410, 1529, 2114
NaeI	GCCGGC	1 cut(s)	178
NciI	CCSGG	2 cut(s)	416, 417
NdeI	CATATG	2 cut(s)	2097, 2617
NgoMIV	GCCGGC	1 cut(s)	176
NlaIV	GGNNCC	4 cut(s)	739, 1993, 1994, 2895
NmeAIII	GCCGAG	1 cut(s)	2459
NmuCI	GTSAC	5 cut(s)	302, 1210, 1430, 1579, 1695
NsiI	ATGCAT	1 cut(s)	581
NspI	RCATGY	1 cut(s)	3059
PacI	TTAATTAA	1 cut(s)	2208
PagI	TCATGA	1 cut(s)	3046
PasI	CCCWGGG	1 cut(s)	858
PciSI	GCTCTTC	2 cut(s)	798, 1033
PctI	GAATGC	1 cut(s)	1946
PdiI	GCCGGC	1 cut(s)	178
PdmI	GAANNNNTTC	4 cut(s)	639, 807, 840, 888
PfeI	GAWTC	3 cut(s)	2084, 3295, 3425
PflMI	CCANNNNNTGG	1 cut(s)	2159
PfoI	TCCNGGA	1 cut(s)	1408
PleI	GAGTC	5 cut(s)	251, 673, 1251, 2300, 2581
PpsI	GAGTC	5 cut(s)	251, 673, 1251, 2300, 2581
Ppu21I	YACGTR	1 cut(s)	1307
PpuMI	RGGWCCY	1 cut(s)	1992
PshAI	GACNNNNGTC	1 cut(s)	3396
PshBI	ATTAAT	6 cut(s)	771, 1067, 1124, 1233, 1293, 2204
Psp124BI	GAGCTC	1 cut(s)	1191
Psp5II	RGGWCCY	1 cut(s)	1992
Psp6I	CCWGG	5 cut(s)	857, 1380, 1408, 1527, 2112
PspEI	GGTNACC	1 cut(s)	2642
PspFI	CCCAGC	1 cut(s)	2923
PspGI	CCWGG	5 cut(s)	857, 1380, 1408, 1527, 2112
PspN4I	GGNNCC	4 cut(s)	739, 1993, 1994, 2895
PspPI	GGNCC	8 cut(s)	624, 737, 1992, 2033, 2104, 2227, 2674, 3200
PspPPI	RGGWCCY	1 cut(s)	1992
PstI	CTGCAG	1 cut(s)	2611
PsuI	RGATCY	3 cut(s)	1286, 2533, 3000
PvuII	CAGCTG	4 cut(s)	1586, 1859, 2927, 3407
RsaI	GTAC	7 cut(s)	685, 818, 1177, 1818, 2473, 3088, 3411
RsaNI	GTAC	7 cut(s)	684, 817, 1176, 1817, 2472, 3087, 3410
RseI	CAYNNNNRTG	6 cut(s)	14, 320, 2132, 2503, 3253, 3348
SacI	GAGCTC	1 cut(s)	1191
SalI	GTCGAC	1 cut(s)	1768
SapI	GCTCTTC	2 cut(s)	798, 1033
Sau96I	GGNCC	8 cut(s)	624, 737, 1992, 2033, 2104, 2227, 2674, 3200
ScaI	AGTACT	1 cut(s)	1177
SchI	GAGTC	5 cut(s)	252, 673, 1252, 2300, 2582
ScrFI	CCNGG	7 cut(s)	416, 417, 859, 1382, 1410, 1529, 2114
SduI	GDGCHC	3 cut(s)	428, 523, 1191
SfcI	CTRYAG	3 cut(s)	2430, 2607, 2748
SinI	GGWCC	5 cut(s)	737, 1992, 2033, 2674, 3200
SmaI	CCCGGG	1 cut(s)	417
SmiMI	CAYNNNNRTG	6 cut(s)	14, 320, 2132, 2503, 3253, 3348
SmlI	CTYRAG	5 cut(s)	649, 968, 2903, 3230, 3575
SmoI	CTYRAG	5 cut(s)	649, 968, 2903, 3230, 3575
SsiI	CCGC	8 cut(s)	389, 1061, 1897, 2189, 2911, 3069, 3517, 3558
SspI	AATATT	6 cut(s)	148, 691, 1636, 2563, 2632, 2657
SspMI	CTAG	6 cut(s)	128, 833, 1539, 2303, 3272, 3335
SstI	GAGCTC	1 cut(s)	1191
StyD4I	CCNGG	7 cut(s)	414, 415, 857, 1380, 1408, 1527, 2112
StyI	CCWWGG	1 cut(s)	2265
TaiI	ACGT	1 cut(s)	1309
TaqI	TCGA	5 cut(s)	143, 1769, 1849, 2571, 2592
TaqII	GACCGA	1 cut(s)	2021
TatI	WGTACW	6 cut(s)	816, 1175, 1816, 2471, 3086, 3409
TauI	GCSGC	2 cut(s)	1064, 3071
TfiI	GAWTC	3 cut(s)	2084, 3295, 3425
TseFI	GTSAC	5 cut(s)	302, 1210, 1430, 1579, 1695
Tsp45I	GTSAC	5 cut(s)	302, 1210, 1430, 1579, 1695
TspGWI	ACGGA	3 cut(s)	1022, 1607, 1969
TspMI	CCCGGG	1 cut(s)	415
Van91I	CCANNNNNTGG	1 cut(s)	2159
Vha464I	CTTAAG	2 cut(s)	2903, 3575
VpaK11BI	GGWCC	5 cut(s)	737, 1992, 2033, 2674, 3200
VspI	ATTAAT	6 cut(s)	771, 1067, 1124, 1233, 1293, 2204
XagI	CCTNNNNNAGG	1 cut(s)	3116
XapI	RAATTY	4 cut(s)	885, 1999, 2451, 2794
XbaI	TCTAGA	1 cut(s)	127
XceI	RCATGY	1 cut(s)	3059
XmaI	CCCGGG	1 cut(s)	415
XmiI	GTMKAC	2 cut(s)	25, 1769
XmnI	GAANNNNTTC	4 cut(s)	639, 807, 840, 888
XspI	CTAG	6 cut(s)	128, 833, 1539, 2303, 3272, 3335
ZrmI	AGTACT	1 cut(s)	1177
Zsp2I	ATGCAT	1 cut(s)	581

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.