Cullin-associated NEDD8-dissociated protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G02560 AT2G02560 |
| fragaria_vesca | FvH4_7g33400 FvH4_7g33400 |
| malus_domestica | MD01G1232300.v1.1 MD07G1304100.v1.1 |
| prunus_persica | Prupe.2G322700_v2.0.a1 Prupe.2G322700_v2.0.a1 Prupe.2G322700_v2.0.a1 |
| pyrus_communis | pycom01g24070 pycom07g27710 |
| rosa_chinensis | RchiOBHm_Chr1g0383371 |
| rosa_laevigata | RLG00000026107 |
| rosa_multiflora | Rmu_co8130632.1_g000001 Rmu_sc0007173.1_g000011 Rmu_sc0019557.1_g000001 Rmu_sc0020036.1_g000001 |
| rosa_roxburghii | Rroxscaffold_4G00277350 |
| rosa_rugosa | Rorug01G0441000 |
| rosa_samantha | Rh1AG466900 Rh1BG424200 Rh1CG437300 Rh1DG456900 |
| rosa_wichuraiana | Rw1G040570 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 152 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 3161 |
| Acc36I | ACCTGC | 2 cut(s) | 2655, 2890 |
| AccB1I | GGYRCC | 1 cut(s) | 852 |
| AciI | CCGC | 5 cut(s) | 176, 1061, 2189, 3068, 3389 |
| AclI | AACGTT | 1 cut(s) | 2201 |
| AclWI | GGATC | 3 cut(s) | 300, 3431, 3444 |
| AcoI | YGGCCR | 2 cut(s) | 1628, 3414 |
| AcsI | RAATTY | 6 cut(s) | 106, 342, 885, 1999, 2451, 2476 |
| AcuI | CTGAAG | 1 cut(s) | 2744 |
| AdeI | CACNNNGTG | 1 cut(s) | 3217 |
| AfaI | GTAC | 4 cut(s) | 685, 1818, 2473, 3088 |
| AfeI | AGCGCT | 1 cut(s) | 3523 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 558, 2113, 2159, 2342, 3118 |
| AflII | CTTAAG | 3 cut(s) | 1951, 2903, 3575 |
| AjnI | CCWGG | 5 cut(s) | 415, 857, 1380, 1408, 2112 |
| Alw21I | GWGCWC | 2 cut(s) | 523, 2216 |
| Alw26I | GTCTC | 2 cut(s) | 534, 2513 |
| AlwI | GGATC | 3 cut(s) | 300, 3431, 3444 |
| Ama87I | CYCGRG | 1 cut(s) | 2510 |
| Aor51HI | AGCGCT | 1 cut(s) | 3523 |
| AoxI | GGCC | 7 cut(s) | 412, 1628, 1967, 2103, 2981, 3199, 3414 |
| ApoI | RAATTY | 6 cut(s) | 106, 342, 885, 1999, 2451, 2476 |
| AseI | ATTAAT | 4 cut(s) | 399, 771, 1067, 1124 |
| Asp700I | GAANNNNTTC | 4 cut(s) | 639, 840, 888, 2832 |
| AspLEI | GCGC | 1 cut(s) | 3524 |
| AspS9I | GGNCC | 6 cut(s) | 413, 737, 1992, 2104, 2674, 3200 |
| AsuC2I | CCSGG | 1 cut(s) | 2153 |
| AsuHPI | GGTGA | 4 cut(s) | 134, 191, 1790, 2423 |
| AvaI | CYCGRG | 1 cut(s) | 2510 |
| AvaII | GGWCC | 3 cut(s) | 737, 1992, 2674 |
| BaeGI | GKGCMC | 1 cut(s) | 857 |
| BamHI | GGATCC | 1 cut(s) | 3436 |
| BanI | GGYRCC | 1 cut(s) | 852 |
| BanII | GRGCYC | 1 cut(s) | 2216 |
| BauI | CACGAG | 1 cut(s) | 968 |
| BbsI | GAAGAC | 2 cut(s) | 332, 1431 |
| Bbv12I | GWGCWC | 2 cut(s) | 523, 2216 |
| BbvCI | CCTCAGC | 1 cut(s) | 1587 |
| BceAI | ACGGC | 2 cut(s) | 2118, 3401 |
| BciT130I | CCWGG | 5 cut(s) | 417, 859, 1382, 1410, 2114 |
| BciVI | GTATCC | 1 cut(s) | 943 |
| BclI | TGATCA | 4 cut(s) | 1387, 2413, 3180, 3286 |
| BcnI | CCSGG | 1 cut(s) | 2153 |
| BcoDI | GTCTC | 2 cut(s) | 534, 2513 |
| BfaI | CTAG | 5 cut(s) | 11, 128, 1539, 1760, 2303 |
| BfmI | CTRYAG | 2 cut(s) | 2222, 2607 |
| BfoI | RGCGCY | 1 cut(s) | 3525 |
| BfrI | CTTAAG | 3 cut(s) | 1951, 2903, 3575 |
| BfuAI | ACCTGC | 2 cut(s) | 2655, 2890 |
| BfuI | GTATCC | 1 cut(s) | 943 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 2240 |
| BglII | AGATCT | 4 cut(s) | 1286, 1903, 2533, 3326 |
| BlpI | GCTNAGC | 2 cut(s) | 1057, 2484 |
| Bme1390I | CCNGG | 6 cut(s) | 417, 859, 1382, 1410, 2114, 2153 |
| Bme18I | GGWCC | 3 cut(s) | 737, 1992, 2674 |
| BmeT110I | CYCGRG | 1 cut(s) | 2510 |
| BmgT120I | GGNCC | 6 cut(s) | 413, 737, 1992, 2104, 2674, 3200 |
| BmiI | GGNNCC | 5 cut(s) | 739, 854, 1993, 1994, 3438 |
| BmrFI | CCNGG | 6 cut(s) | 417, 859, 1382, 1410, 2114, 2153 |
| BmrI | ACTGGG | 2 cut(s) | 755, 2332 |
| BmsI | GCATC | 8 cut(s) | 307, 797, 1077, 3021, 3348, 3466, 3548, 3556 |
| BmuI | ACTGGG | 2 cut(s) | 755, 2332 |
| BoxI | GACNNNNGTC | 2 cut(s) | 3279, 3396 |
| BpiI | GAAGAC | 2 cut(s) | 332, 1431 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 529, 561 |
| Bpu10I | CCTNAGC | 2 cut(s) | 848, 1587 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 1057, 2484 |
| BpuEI | CTTGAG | 4 cut(s) | 531, 670, 2636, 3251 |
| BpuMI | CCSGG | 1 cut(s) | 2153 |
| BsaAI | YACGTR | 1 cut(s) | 1307 |
| BsaBI | GATNNNNATC | 3 cut(s) | 123, 297, 1719 |
| BsaJI | CCNNGG | 5 cut(s) | 415, 857, 858, 2112, 2265 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 558, 2113, 2159, 2342, 3118 |
| Bse118I | RCCGGY | 4 cut(s) | 20, 41, 551, 3051 |
| Bse1I | ACTGG | 6 cut(s) | 33, 415, 761, 1207, 1824, 2338 |
| Bse8I | GATNNNNATC | 3 cut(s) | 123, 297, 1719 |
| BseBI | CCWGG | 5 cut(s) | 417, 859, 1382, 1410, 2114 |
| BseDI | CCNNGG | 5 cut(s) | 415, 857, 858, 2112, 2265 |
| BseJI | GATNNNNATC | 3 cut(s) | 123, 297, 1719 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 558, 2113, 2159, 2342, 3118 |
| BseMII | CTCAG | 3 cut(s) | 545, 1074, 1578 |
| BseNI | ACTGG | 6 cut(s) | 33, 415, 761, 1207, 1824, 2338 |
| BseRI | GAGGAG | 4 cut(s) | 818, 959, 986, 1121 |
| BseSI | GKGCMC | 1 cut(s) | 857 |
| BseX3I | CGGCCG | 1 cut(s) | 1628 |
| BseYI | CCCAGC | 1 cut(s) | 2923 |
| BsgI | GTGCAG | 3 cut(s) | 763, 2110, 2883 |
| Bsh1285I | CGRYCG | 1 cut(s) | 1631 |
| BshFI | GGCC | 7 cut(s) | 414, 1630, 1969, 2105, 2983, 3201, 3416 |
| BshNI | GGYRCC | 1 cut(s) | 852 |
| BsiEI | CGRYCG | 1 cut(s) | 1631 |
| BsiHKAI | GWGCWC | 2 cut(s) | 523, 2216 |
| BsiHKCI | CYCGRG | 1 cut(s) | 2510 |
| BsiSI | CCGG | 5 cut(s) | 21, 42, 552, 2153, 3052 |
| BslFI | GGGAC | 2 cut(s) | 743, 2005 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 558, 2113, 2159, 2342, 3118 |
| BsmAI | GTCTC | 2 cut(s) | 534, 2513 |
| BsmFI | GGGAC | 2 cut(s) | 743, 2005 |
| BsmI | GAATGC | 1 cut(s) | 1946 |
| BsnI | GGCC | 7 cut(s) | 414, 1630, 1969, 2105, 2983, 3201, 3416 |
| BsoBI | CYCGRG | 1 cut(s) | 2510 |
| Bsp1286I | GDGCHC | 3 cut(s) | 523, 857, 2216 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 1057, 2484 |
| BspACI | CCGC | 5 cut(s) | 176, 1061, 2189, 3068, 3389 |
| BspANI | GGCC | 7 cut(s) | 414, 1630, 1969, 2105, 2983, 3201, 3416 |
| BspCNI | CTCAG | 3 cut(s) | 544, 1075, 1579 |
| BspLI | GGNNCC | 5 cut(s) | 739, 854, 1993, 1994, 3438 |
| BspMAI | CTGCAG | 2 cut(s) | 2226, 2611 |
| BspMI | ACCTGC | 2 cut(s) | 2655, 2890 |
| BspPI | GGATC | 3 cut(s) | 300, 3431, 3444 |
| BspQI | GCTCTTC | 1 cut(s) | 1033 |
| BspT107I | GGYRCC | 1 cut(s) | 852 |
| BspTI | CTTAAG | 3 cut(s) | 1951, 2903, 3575 |
| BsrFI | RCCGGY | 4 cut(s) | 20, 41, 551, 3051 |
| BsrI | ACTGG | 6 cut(s) | 33, 415, 761, 1207, 1824, 2338 |
| BssAI | RCCGGY | 4 cut(s) | 20, 41, 551, 3051 |
| BssECI | CCNNGG | 5 cut(s) | 415, 857, 858, 2112, 2265 |
| BssSI | CACGAG | 1 cut(s) | 968 |
| BssT1I | CCWWGG | 1 cut(s) | 2265 |
| Bst2BI | CACGAG | 1 cut(s) | 968 |
| Bst2UI | CCWGG | 5 cut(s) | 417, 859, 1382, 1410, 2114 |
| Bst6I | CTCTTC | 2 cut(s) | 1033, 2589 |
| BstAFI | CTTAAG | 3 cut(s) | 1951, 2903, 3575 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1270 |
| BstBAI | YACGTR | 1 cut(s) | 1307 |
| BstC8I | GCNNGC | 9 cut(s) | 236, 313, 824, 828, 1491, 2193, 2232, 3066, 3387 |
| BstEII | GGTNACC | 1 cut(s) | 2642 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 3116 |
| BstH2I | RGCGCY | 1 cut(s) | 3525 |
| BstHHI | GCGC | 1 cut(s) | 3524 |
| BstMAI | GTCTC | 2 cut(s) | 534, 2513 |
| BstMCI | CGRYCG | 1 cut(s) | 1631 |
| BstNI | CCWGG | 5 cut(s) | 417, 859, 1382, 1410, 2114 |
| BstNSI | RCATGY | 2 cut(s) | 2443, 3059 |
| BstPAI | GACNNNNGTC | 2 cut(s) | 3279, 3396 |
| BstPI | GGTNACC | 1 cut(s) | 2642 |
| BstSCI | CCNGG | 6 cut(s) | 415, 857, 1380, 1408, 2112, 2151 |
| BstSFI | CTRYAG | 2 cut(s) | 2222, 2607 |
| BstSLI | GKGCMC | 1 cut(s) | 857 |
| BstV2I | GAAGAC | 2 cut(s) | 332, 1431 |
| BstX2I | RGATCY | 5 cut(s) | 1286, 1903, 2533, 3326, 3436 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 2345 |
| BstYI | RGATCY | 5 cut(s) | 1286, 1903, 2533, 3326, 3436 |
| BstZI | CGGCCG | 1 cut(s) | 1628 |
| BsuI | GTATCC | 1 cut(s) | 943 |
| BsuRI | GGCC | 7 cut(s) | 414, 1630, 1969, 2105, 2983, 3201, 3416 |
| BtsIMutI | CAGTG | 6 cut(s) | 753, 768, 930, 1892, 2072, 2809 |
| BveI | ACCTGC | 2 cut(s) | 2655, 2890 |
| Cac8I | GCNNGC | 9 cut(s) | 236, 313, 824, 828, 1491, 2193, 2232, 3066, 3387 |
| CfoI | GCGC | 1 cut(s) | 3524 |
| Cfr10I | RCCGGY | 4 cut(s) | 20, 41, 551, 3051 |
| Cfr13I | GGNCC | 6 cut(s) | 413, 737, 1992, 2104, 2674, 3200 |
| Csp6I | GTAC | 4 cut(s) | 684, 1817, 2472, 3087 |
| CviAII | CATG | 8 cut(s) | 503, 576, 940, 1753, 1911, 2440, 2546, 3056 |
| CviQI | GTAC | 4 cut(s) | 684, 1817, 2472, 3087 |
| DraI | TTTAAA | 2 cut(s) | 112, 1138 |
| DraIII | CACNNNGTG | 1 cut(s) | 3217 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 3161 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 3161 |
| EaeI | YGGCCR | 2 cut(s) | 1628, 3414 |
| EagI | CGGCCG | 1 cut(s) | 1628 |
| Eam1104I | CTCTTC | 2 cut(s) | 1033, 2589 |
| EarI | CTCTTC | 2 cut(s) | 1033, 2589 |
| Ecl136II | GAGCTC | 1 cut(s) | 2214 |
| EclXI | CGGCCG | 1 cut(s) | 1628 |
| Eco130I | CCWWGG | 1 cut(s) | 2265 |
| Eco24I | GRGCYC | 1 cut(s) | 2216 |
| Eco32I | GATATC | 2 cut(s) | 454, 728 |
| Eco47I | GGWCC | 3 cut(s) | 737, 1992, 2674 |
| Eco47III | AGCGCT | 1 cut(s) | 3523 |
| Eco52I | CGGCCG | 1 cut(s) | 1628 |
| Eco53kI | GAGCTC | 1 cut(s) | 2214 |
| Eco57I | CTGAAG | 1 cut(s) | 2744 |
| Eco88I | CYCGRG | 1 cut(s) | 2510 |
| Eco91I | GGTNACC | 1 cut(s) | 2642 |
| EcoICRI | GAGCTC | 1 cut(s) | 2214 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 3116 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1992 |
| EcoO65I | GGTNACC | 1 cut(s) | 2642 |
| EcoRI | GAATTC | 1 cut(s) | 1999 |
| EcoRII | CCWGG | 5 cut(s) | 415, 857, 1380, 1408, 2112 |
| EcoRV | GATATC | 2 cut(s) | 454, 728 |
| EcoT14I | CCWWGG | 1 cut(s) | 2265 |
| EcoT22I | ATGCAT | 1 cut(s) | 581 |
| EcoT38I | GRGCYC | 1 cut(s) | 2216 |
| ErhI | CCWWGG | 1 cut(s) | 2265 |
| FaeI | CATG | 8 cut(s) | 506, 579, 943, 1756, 1914, 2443, 2549, 3059 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 304, 336 |
| FaqI | GGGAC | 2 cut(s) | 743, 2005 |
| FatI | CATG | 8 cut(s) | 502, 575, 939, 1752, 1910, 2439, 2545, 3055 |
| FauI | CCCGC | 1 cut(s) | 169 |
| FauNDI | CATATG | 1 cut(s) | 2097 |
| FbaI | TGATCA | 4 cut(s) | 1387, 2413, 3180, 3286 |
| FriOI | GRGCYC | 1 cut(s) | 2216 |
| FspBI | CTAG | 5 cut(s) | 11, 128, 1539, 1760, 2303 |
| GlaI | GCGC | 1 cut(s) | 3523 |
| GsaI | CCCAGC | 1 cut(s) | 2927 |
| HaeII | RGCGCY | 1 cut(s) | 3525 |
| HaeIII | GGCC | 7 cut(s) | 414, 1630, 1969, 2105, 2983, 3201, 3416 |
| HapII | CCGG | 5 cut(s) | 21, 42, 552, 2153, 3052 |
| HhaI | GCGC | 1 cut(s) | 3524 |
| Hin1II | CATG | 8 cut(s) | 506, 579, 943, 1756, 1914, 2443, 2549, 3059 |
| Hin6I | GCGC | 1 cut(s) | 3522 |
| HinP1I | GCGC | 1 cut(s) | 3522 |
| HincII | GTYRAC | 2 cut(s) | 1770, 1941 |
| HindII | GTYRAC | 2 cut(s) | 1770, 1941 |
| HindIII | AAGCTT | 2 cut(s) | 2361, 3383 |
| HinfI | GANTC | 8 cut(s) | 679, 1243, 2084, 2306, 2573, 2771, 3425, 3514 |
| HpaII | CCGG | 5 cut(s) | 21, 42, 552, 2153, 3052 |
| HphI | GGTGA | 4 cut(s) | 134, 191, 1790, 2423 |
| Hpy166II | GTNNAC | 6 cut(s) | 1400, 1770, 1941, 2437, 3262, 3295 |
| Hpy8I | GTNNAC | 6 cut(s) | 1400, 1770, 1941, 2437, 3262, 3295 |
| HpyCH4IV | ACGT | 4 cut(s) | 171, 1306, 1337, 2201 |
| HpySE526I | ACGT | 4 cut(s) | 171, 1306, 1337, 2201 |
| Hsp92II | CATG | 8 cut(s) | 506, 579, 943, 1756, 1914, 2443, 2549, 3059 |
| HspAI | GCGC | 1 cut(s) | 3522 |
| KflI | GGGWCCC | 1 cut(s) | 1992 |
| Ksp22I | TGATCA | 4 cut(s) | 1387, 2413, 3180, 3286 |
| LguI | GCTCTTC | 1 cut(s) | 1033 |
| LmnI | GCTCC | 4 cut(s) | 217, 805, 1921, 2546 |
| LweI | GCATC | 8 cut(s) | 307, 797, 1077, 3021, 3348, 3466, 3548, 3556 |
| MaeI | CTAG | 5 cut(s) | 11, 128, 1539, 1760, 2303 |
| MaeII | ACGT | 4 cut(s) | 171, 1306, 1337, 2201 |
| MaeIII | GTNAC | 5 cut(s) | 302, 1210, 1579, 1695, 2642 |
| MfeI | CAATTG | 1 cut(s) | 3534 |
| MflI | RGATCY | 5 cut(s) | 1286, 1903, 2533, 3326, 3436 |
| MhlI | GDGCHC | 3 cut(s) | 523, 857, 2216 |
| MlyI | GAGTC | 5 cut(s) | 673, 1252, 2300, 2582, 3419 |
| MmeI | TCCRAC | 3 cut(s) | 703, 1899, 3638 |
| Mph1103I | ATGCAT | 1 cut(s) | 581 |
| MroXI | GAANNNNTTC | 4 cut(s) | 639, 840, 888, 2832 |
| MslI | CAYNNNNRTG | 3 cut(s) | 2132, 3253, 3348 |
| MspA1I | CMGCKG | 3 cut(s) | 1586, 1859, 2927 |
| MspCI | CTTAAG | 3 cut(s) | 1951, 2903, 3575 |
| MspI | CCGG | 5 cut(s) | 21, 42, 552, 2153, 3052 |
| MspR9I | CCNGG | 6 cut(s) | 417, 859, 1382, 1410, 2114, 2153 |
| MunI | CAATTG | 1 cut(s) | 3534 |
| Mva1269I | GAATGC | 1 cut(s) | 1946 |
| MvaI | CCWGG | 5 cut(s) | 417, 859, 1382, 1410, 2114 |
| NciI | CCSGG | 1 cut(s) | 2153 |
| NdeI | CATATG | 1 cut(s) | 2097 |
| NlaIII | CATG | 8 cut(s) | 506, 579, 943, 1756, 1914, 2443, 2549, 3059 |
| NlaIV | GGNNCC | 5 cut(s) | 739, 854, 1993, 1994, 3438 |
| NmuCI | GTSAC | 3 cut(s) | 302, 1579, 1695 |
| NsiI | ATGCAT | 1 cut(s) | 581 |
| NspI | RCATGY | 2 cut(s) | 2443, 3059 |
| PacI | TTAATTAA | 1 cut(s) | 2208 |
| PasI | CCCWGGG | 1 cut(s) | 858 |
| PciSI | GCTCTTC | 1 cut(s) | 1033 |
| PctI | GAATGC | 1 cut(s) | 1946 |
| PdmI | GAANNNNTTC | 4 cut(s) | 639, 840, 888, 2832 |
| PfeI | GAWTC | 3 cut(s) | 2084, 2771, 3514 |
| PflFI | GACNNNGTC | 1 cut(s) | 755 |
| PfoI | TCCNGGA | 1 cut(s) | 1408 |
| PleI | GAGTC | 5 cut(s) | 673, 1251, 2300, 2581, 3419 |
| PpsI | GAGTC | 5 cut(s) | 673, 1251, 2300, 2581, 3419 |
| Ppu21I | YACGTR | 1 cut(s) | 1307 |
| PpuMI | RGGWCCY | 1 cut(s) | 1992 |
| PshAI | GACNNNNGTC | 2 cut(s) | 3279, 3396 |
| PshBI | ATTAAT | 4 cut(s) | 399, 771, 1067, 1124 |
| PsiI | TTATAA | 1 cut(s) | 152 |
| Psp124BI | GAGCTC | 1 cut(s) | 2216 |
| Psp1406I | AACGTT | 1 cut(s) | 2201 |
| Psp5II | RGGWCCY | 1 cut(s) | 1992 |
| Psp6I | CCWGG | 5 cut(s) | 415, 857, 1380, 1408, 2112 |
| PspEI | GGTNACC | 1 cut(s) | 2642 |
| PspFI | CCCAGC | 1 cut(s) | 2923 |
| PspGI | CCWGG | 5 cut(s) | 415, 857, 1380, 1408, 2112 |
| PspN4I | GGNNCC | 5 cut(s) | 739, 854, 1993, 1994, 3438 |
| PspPI | GGNCC | 6 cut(s) | 413, 737, 1992, 2104, 2674, 3200 |
| PspPPI | RGGWCCY | 1 cut(s) | 1992 |
| PstI | CTGCAG | 2 cut(s) | 2226, 2611 |
| PsuI | RGATCY | 5 cut(s) | 1286, 1903, 2533, 3326, 3436 |
| PsyI | GACNNNGTC | 1 cut(s) | 755 |
| PvuII | CAGCTG | 3 cut(s) | 1586, 1859, 2927 |
| RsaI | GTAC | 4 cut(s) | 685, 1818, 2473, 3088 |
| RsaNI | GTAC | 4 cut(s) | 684, 1817, 2472, 3087 |
| RseI | CAYNNNNRTG | 3 cut(s) | 2132, 3253, 3348 |
| SacI | GAGCTC | 1 cut(s) | 2216 |
| SapI | GCTCTTC | 1 cut(s) | 1033 |
| Sau96I | GGNCC | 6 cut(s) | 413, 737, 1992, 2104, 2674, 3200 |
| SchI | GAGTC | 5 cut(s) | 673, 1252, 2300, 2582, 3419 |
| ScrFI | CCNGG | 6 cut(s) | 417, 859, 1382, 1410, 2114, 2153 |
| SduI | GDGCHC | 3 cut(s) | 523, 857, 2216 |
| SfaNI | GCATC | 8 cut(s) | 307, 797, 1077, 3021, 3348, 3466, 3548, 3556 |
| SfcI | CTRYAG | 2 cut(s) | 2222, 2607 |
| SinI | GGWCC | 3 cut(s) | 737, 1992, 2674 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 2132, 3253, 3348 |
| SmlI | CTYRAG | 7 cut(s) | 546, 649, 1951, 2651, 2903, 3230, 3575 |
| SmoI | CTYRAG | 7 cut(s) | 546, 649, 1951, 2651, 2903, 3230, 3575 |
| SsiI | CCGC | 5 cut(s) | 176, 1061, 2189, 3068, 3389 |
| SspI | AATATT | 6 cut(s) | 148, 691, 1636, 2563, 2632, 2966 |
| SspMI | CTAG | 5 cut(s) | 11, 128, 1539, 1760, 2303 |
| SstI | GAGCTC | 1 cut(s) | 2216 |
| StyD4I | CCNGG | 6 cut(s) | 415, 857, 1380, 1408, 2112, 2151 |
| StyI | CCWWGG | 1 cut(s) | 2265 |
| TaiI | ACGT | 4 cut(s) | 174, 1309, 1340, 2204 |
| TaqI | TCGA | 5 cut(s) | 596, 1527, 1849, 2751, 2774 |
| TatI | WGTACW | 3 cut(s) | 1816, 2471, 3086 |
| TauI | GCSGC | 2 cut(s) | 1064, 3071 |
| TfiI | GAWTC | 3 cut(s) | 2084, 2771, 3514 |
| TscAI | CASTG | 6 cut(s) | 760, 768, 937, 1899, 2079, 2816 |
| TseFI | GTSAC | 3 cut(s) | 302, 1579, 1695 |
| Tsp45I | GTSAC | 3 cut(s) | 302, 1579, 1695 |
| TspGWI | ACGGA | 2 cut(s) | 1022, 1607 |
| TspRI | CASTG | 6 cut(s) | 760, 768, 937, 1899, 2079, 2816 |
| Tth111I | GACNNNGTC | 1 cut(s) | 755 |
| Vha464I | CTTAAG | 3 cut(s) | 1951, 2903, 3575 |
| VpaK11BI | GGWCC | 3 cut(s) | 737, 1992, 2674 |
| VspI | ATTAAT | 4 cut(s) | 399, 771, 1067, 1124 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 3116 |
| XapI | RAATTY | 6 cut(s) | 106, 342, 885, 1999, 2451, 2476 |
| XbaI | TCTAGA | 1 cut(s) | 127 |
| XceI | RCATGY | 2 cut(s) | 2443, 3059 |
| XmnI | GAANNNNTTC | 4 cut(s) | 639, 840, 888, 2832 |
| XspI | CTAG | 5 cut(s) | 11, 128, 1539, 1760, 2303 |
| Zsp2I | ATGCAT | 1 cut(s) | 581 |