Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007173.1

Orthogroup ID

OG0007920

Physical Location & Seq

Genomic Coordinates Reverse (-)

31588 .. 34091

Gene Structure 2504 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007173.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1248 bp

atggcgaacattgcaatgactggtatactggagaagatgacggggaaggataaggattatagatacatggcaacatctgatttgttgaacgaattaaacaaagacaattttaaagccgatgctgatctagagataaagttgtcgaatattattattcagcaacttgatgatgttgccggtgatgtatctggattggctgtcaaatgtcttgctccattagttaagaaggtcagcgagccacgagtcgtggagatgacaaataagctttgtgagaaattgctaaaggagaaggatcaacatcgtgacattgccagcatagctatgaaggctattgttgcagaagtttctactcaatcacttgcacagtctattcttgtgtctattttacctcagttgattaaaggaattactgccccaggaatgagcacagagataaaatgtgaatgtcttgatatcttatgtgatgtccttcataagtttggcaatcttatggcaaccgaccatgagctactattaggtgctctcttgtctcagttgagttccaatcaggccagcgtgaggaagaaaactgtgtcatgcatcgcatcacttgcttcaagcttgtcagacgatttgttggcaaaggccactgttgaagttgttcagaacttgagaaataaaggcatgaagtctgaaatgactcgtacaaatattcagatgattggtgctttaagtcgtgctgttggctatcgttttggaccccatcttgctgacaccgtcccagtgctaattaattattgcacaagtgcatctgagaatgatgaagagcttcgtgagtacagtttgcaggcactagaaagttttctgcttaggtgtcccagggatatttcttcctattgtgatgaaattcttcatcttaacttggagtatctgagttacgacccaaacttcactgataacatggaagaagatactgatgatgaaactcttgaggaggaggaagatgatgagagtgcgaatgaatatacggatgatgaagatgtcagttggaaagtccgaagagcagcagctaaatgcttagcggcattaattgtatctcgtcctgagatgcttaccaagctgtatgaggaggcttgtccaaaattaattgagagatttaaagagagggaagaaaatgtcaagatggatgttttcagtactttcactgagctcttgcagcaaactggaaatgtcacaaagggtcagattgatattaatgaacagaggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0006464 GO:0006807 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009733 GO:0009791 GO:0009987 GO:0010033 GO:0010051 GO:0010228 GO:0010265 GO:0016020 GO:0016043 GO:0016567 GO:0019538 GO:0022414 GO:0022607 GO:0030312 GO:0032446 GO:0032501 GO:0032502 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061458 GO:0065003 GO:0070647 GO:0071704 GO:0071840 GO:0071944 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TIP120

Protein Analysis

415

Amino Acids

46.38

Weight (kDa)

4.69

Isoelectric Point (pI)

45.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007920)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G02560 AT2G02560
fragaria_vesca	FvH4_7g33400 FvH4_7g33400
malus_domestica	MD01G1232300.v1.1 MD07G1304100.v1.1
prunus_persica	Prupe.2G322700_v2.0.a1 Prupe.2G322700_v2.0.a1 Prupe.2G322700_v2.0.a1
pyrus_communis	pycom01g24070 pycom07g27710
rosa_chinensis	RchiOBHm_Chr1g0383371
rosa_laevigata	RLG00000026107
rosa_multiflora	Rmu_co8130632.1_g000001 Rmu_sc0007173.1_g000011 Rmu_sc0019557.1_g000001 Rmu_sc0020036.1_g000001
rosa_roxburghii	Rroxscaffold_4G00277350
rosa_rugosa	Rorug01G0441000
rosa_samantha	Rh1AG466900 Rh1BG424200 Rh1CG437300 Rh1DG456900
rosa_wichuraiana	Rw1G040570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	25
AciI	CCGC	1 cut(s)	1061
AclWI	GGATC	1 cut(s)	300
AcsI	RAATTY	1 cut(s)	885
AfaI	GTAC	3 cut(s)	685, 818, 1177
AfiI	CCNNNNNNNGG	1 cut(s)	558
AgsI	TTSAA	3 cut(s)	88, 597, 635
AjnI	CCWGG	2 cut(s)	415, 857
AluBI	AGCT	8 cut(s)	265, 320, 508, 600, 808, 1049, 1099, 1189
AluI	AGCT	8 cut(s)	265, 320, 508, 600, 808, 1049, 1099, 1189
Alw21I	GWGCWC	3 cut(s)	428, 523, 1191
Alw26I	GTCTC	1 cut(s)	534
AlwI	GGATC	1 cut(s)	300
AoxI	GGCC	2 cut(s)	549, 624
ApeKI	GCWGC	3 cut(s)	1043, 1046, 1195
ApoI	RAATTY	1 cut(s)	885
AseI	ATTAAT	4 cut(s)	771, 1067, 1124, 1233
Asp700I	GAANNNNTTC	4 cut(s)	639, 807, 840, 888
AspS9I	GGNCC	1 cut(s)	737
AsuHPI	GGTGA	1 cut(s)	191
AvaII	GGWCC	1 cut(s)	737
BanII	GRGCYC	1 cut(s)	1191
BauI	CACGAG	1 cut(s)	240
Bbv12I	GWGCWC	3 cut(s)	428, 523, 1191
BbvI	GCAGC	3 cut(s)	1055, 1058, 1207
BccI	CCATC	2 cut(s)	750, 1156
BciT130I	CCWGG	2 cut(s)	417, 859
BcoDI	GTCTC	1 cut(s)	534
BfaI	CTAG	2 cut(s)	128, 833
BisI	GCNGC	4 cut(s)	1044, 1047, 1062, 1196
BlpI	GCTNAGC	1 cut(s)	1057
BlsI	GCNGC	4 cut(s)	1045, 1048, 1063, 1197
BmcAI	AGTACT	1 cut(s)	1177
Bme1390I	CCNGG	2 cut(s)	417, 859
Bme18I	GGWCC	1 cut(s)	737
BmgT120I	GGNCC	1 cut(s)	737
BmiI	GGNNCC	1 cut(s)	739
BmrFI	CCNGG	2 cut(s)	417, 859
BmrI	ACTGGG	1 cut(s)	755
BmsI	GCATC	5 cut(s)	109, 588, 593, 797, 1077
BmuI	ACTGGG	1 cut(s)	755
BpmI	CTGGAG	1 cut(s)	50
Bpu10I	CCTNAGC	1 cut(s)	848
Bpu1102I	GCTNAGC	1 cut(s)	1057
BpuEI	CTTGAG	2 cut(s)	670, 989
BsaBI	GATNNNNATC	2 cut(s)	123, 297
BsaJI	CCNNGG	3 cut(s)	415, 857, 858
Bsc4I	CCNNNNNNNGG	1 cut(s)	558
Bse118I	RCCGGY	1 cut(s)	176
Bse1I	ACTGG	4 cut(s)	25, 33, 761, 1207
Bse3DI	GCAATG	3 cut(s)	9, 21, 306
Bse8I	GATNNNNATC	2 cut(s)	123, 297
BseBI	CCWGG	2 cut(s)	417, 859
BseDI	CCNNGG	3 cut(s)	415, 857, 858
BseGI	GGATG	2 cut(s)	1015, 1171
BseJI	GATNNNNATC	2 cut(s)	123, 297
BseLI	CCNNNNNNNGG	1 cut(s)	558
BseMI	GCAATG	3 cut(s)	9, 21, 306
BseMII	CTCAG	6 cut(s)	404, 545, 783, 902, 1074, 1176
BseNI	ACTGG	4 cut(s)	25, 33, 761, 1207
BseRI	GAGGAG	3 cut(s)	986, 989, 1121
BseXI	GCAGC	3 cut(s)	1055, 1058, 1207
BshFI	GGCC	2 cut(s)	551, 626
BsiHKAI	GWGCWC	3 cut(s)	428, 523, 1191
BsiSI	CCGG	1 cut(s)	177
BslFI	GGGAC	2 cut(s)	743, 840
BslI	CCNNNNNNNGG	1 cut(s)	558
BsmAI	GTCTC	1 cut(s)	534
BsmFI	GGGAC	2 cut(s)	743, 840
BsnI	GGCC	2 cut(s)	551, 626
Bsp1286I	GDGCHC	3 cut(s)	428, 523, 1191
Bsp143I	GATC	2 cut(s)	124, 292
Bsp1720I	GCTNAGC	1 cut(s)	1057
BspACI	CCGC	1 cut(s)	1061
BspANI	GGCC	2 cut(s)	551, 626
BspCNI	CTCAG	6 cut(s)	403, 544, 784, 903, 1075, 1177
BspLI	GGNNCC	1 cut(s)	739
BspPI	GGATC	1 cut(s)	300
BspQI	GCTCTTC	2 cut(s)	798, 1033
BsrDI	GCAATG	3 cut(s)	9, 21, 306
BsrFI	RCCGGY	1 cut(s)	176
BsrI	ACTGG	4 cut(s)	25, 33, 761, 1207
BssAI	RCCGGY	1 cut(s)	176
BssECI	CCNNGG	3 cut(s)	415, 857, 858
BssMI	GATC	2 cut(s)	124, 292
BssNAI	GTATAC	1 cut(s)	26
BssSI	CACGAG	1 cut(s)	240
Bst1107I	GTATAC	1 cut(s)	26
Bst2BI	CACGAG	1 cut(s)	240
Bst2UI	CCWGG	2 cut(s)	417, 859
Bst4CI	ACNGT	5 cut(s)	366, 571, 631, 757, 821
Bst6I	CTCTTC	2 cut(s)	798, 1033
BstAPI	GCANNNNNTGC	1 cut(s)	590
BstC8I	GCNNGC	4 cut(s)	236, 313, 553, 828
BstDEI	CTNAG	8 cut(s)	390, 531, 792, 848, 911, 1057, 1083, 1185
BstF5I	GGATG	2 cut(s)	1015, 1171
BstKTI	GATC	2 cut(s)	127, 295
BstMAI	GTCTC	1 cut(s)	534
BstMBI	GATC	2 cut(s)	124, 292
BstMWI	GCNNNNNNNGC	7 cut(s)	11, 317, 326, 335, 590, 1096, 1195
BstNI	CCWGG	2 cut(s)	417, 859
BstSCI	CCNGG	2 cut(s)	415, 857
BstV1I	GCAGC	3 cut(s)	1055, 1058, 1207
BstZ17I	GTATAC	1 cut(s)	26
BsuRI	GGCC	2 cut(s)	551, 626
BtgZI	GCGATG	1 cut(s)	565
BtsCI	GGATG	2 cut(s)	1015, 1171
BtsIMutI	CAGTG	4 cut(s)	627, 768, 930, 1182
Cac8I	GCNNGC	4 cut(s)	236, 313, 553, 828
Cfr10I	RCCGGY	1 cut(s)	176
Cfr13I	GGNCC	1 cut(s)	737
Csp6I	GTAC	3 cut(s)	684, 817, 1176
CviAII	CATG	5 cut(s)	67, 503, 576, 664, 940
CviQI	GTAC	3 cut(s)	684, 817, 1176
DdeI	CTNAG	8 cut(s)	390, 531, 792, 848, 911, 1057, 1083, 1185
DpnI	GATC	2 cut(s)	126, 294
DpnII	GATC	2 cut(s)	124, 292
DraI	TTTAAA	2 cut(s)	112, 1138
Eam1104I	CTCTTC	2 cut(s)	798, 1033
EarI	CTCTTC	2 cut(s)	798, 1033
Ecl136II	GAGCTC	1 cut(s)	1189
Eco24I	GRGCYC	1 cut(s)	1191
Eco32I	GATATC	1 cut(s)	454
Eco47I	GGWCC	1 cut(s)	737
Eco53kI	GAGCTC	1 cut(s)	1189
EcoICRI	GAGCTC	1 cut(s)	1189
EcoRII	CCWGG	2 cut(s)	415, 857
EcoRV	GATATC	1 cut(s)	454
EcoT22I	ATGCAT	1 cut(s)	581
EcoT38I	GRGCYC	1 cut(s)	1191
FaeI	CATG	5 cut(s)	70, 506, 579, 667, 943
FaqI	GGGAC	2 cut(s)	743, 840
FatI	CATG	5 cut(s)	66, 502, 575, 663, 939
FblI	GTMKAC	1 cut(s)	25
Fnu4HI	GCNGC	4 cut(s)	1044, 1047, 1062, 1196
FokI	GGATG	2 cut(s)	1022, 1178
FriOI	GRGCYC	1 cut(s)	1191
Fsp4HI	GCNGC	4 cut(s)	1044, 1047, 1062, 1196
FspBI	CTAG	2 cut(s)	128, 833
GluI	GCNGC	4 cut(s)	1044, 1047, 1062, 1196
GsuI	CTGGAG	1 cut(s)	50
HaeIII	GGCC	2 cut(s)	551, 626
HapII	CCGG	1 cut(s)	177
Hin1II	CATG	5 cut(s)	70, 506, 579, 667, 943
HindIII	AAGCTT	2 cut(s)	263, 598
HinfI	GANTC	2 cut(s)	243, 679
HpaII	CCGG	1 cut(s)	177
HphI	GGTGA	1 cut(s)	191
Hpy166II	GTNNAC	1 cut(s)	26
Hpy188I	TCNGA	9 cut(s)	79, 607, 645, 673, 696, 793, 912, 1037, 1224
Hpy188III	TCNNGA	8 cut(s)	128, 189, 302, 449, 812, 968, 1082, 1159
Hpy8I	GTNNAC	1 cut(s)	26
HpyAV	CCTTC	5 cut(s)	40, 220, 283, 319, 479
HpyCH4III	ACNGT	5 cut(s)	366, 571, 631, 757, 821
HpyCH4V	TGCA	8 cut(s)	14, 338, 362, 579, 780, 788, 826, 1195
HpyF10VI	GCNNNNNNNGC	7 cut(s)	11, 317, 326, 335, 590, 1096, 1195
HpyF3I	CTNAG	8 cut(s)	390, 531, 792, 848, 911, 1057, 1083, 1185
Hsp92II	CATG	5 cut(s)	70, 506, 579, 667, 943
Kzo9I	GATC	2 cut(s)	124, 292
LguI	GCTCTTC	2 cut(s)	798, 1033
LmnI	GCTCC	1 cut(s)	217
Lsp1109I	GCAGC	3 cut(s)	1055, 1058, 1207
LweI	GCATC	5 cut(s)	109, 588, 593, 797, 1077
MaeI	CTAG	2 cut(s)	128, 833
MaeIII	GTNAC	3 cut(s)	302, 914, 1210
MalI	GATC	2 cut(s)	126, 294
MboI	GATC	2 cut(s)	124, 292
MhlI	GDGCHC	3 cut(s)	428, 523, 1191
MlyI	GAGTC	2 cut(s)	252, 673
MmeI	TCCRAC	1 cut(s)	1007
MnlI	CCTC	9 cut(s)	399, 552, 964, 967, 970, 1099, 1102, 1137, 1236
Mph1103I	ATGCAT	1 cut(s)	581
MroXI	GAANNNNTTC	4 cut(s)	639, 807, 840, 888
MslI	CAYNNNNRTG	2 cut(s)	14, 320
MspI	CCGG	1 cut(s)	177
MspR9I	CCNGG	2 cut(s)	417, 859
MvaI	CCWGG	2 cut(s)	417, 859
MwoI	GCNNNNNNNGC	7 cut(s)	11, 317, 326, 335, 590, 1096, 1195
NdeII	GATC	2 cut(s)	124, 292
NlaIII	CATG	5 cut(s)	70, 506, 579, 667, 943
NlaIV	GGNNCC	1 cut(s)	739
NmuCI	GTSAC	2 cut(s)	302, 1210
NsiI	ATGCAT	1 cut(s)	581
PasI	CCCWGGG	1 cut(s)	858
PciSI	GCTCTTC	2 cut(s)	798, 1033
PdmI	GAANNNNTTC	4 cut(s)	639, 807, 840, 888
PflFI	GACNNNGTC	1 cut(s)	755
PkrI	GCNGC	4 cut(s)	1045, 1048, 1063, 1197
PleI	GAGTC	2 cut(s)	251, 673
PpsI	GAGTC	2 cut(s)	251, 673
PshBI	ATTAAT	4 cut(s)	771, 1067, 1124, 1233
Psp124BI	GAGCTC	1 cut(s)	1191
Psp6I	CCWGG	2 cut(s)	415, 857
PspGI	CCWGG	2 cut(s)	415, 857
PspN4I	GGNNCC	1 cut(s)	739
PspPI	GGNCC	1 cut(s)	737
PsyI	GACNNNGTC	1 cut(s)	755
RsaI	GTAC	3 cut(s)	685, 818, 1177
RsaNI	GTAC	3 cut(s)	684, 817, 1176
RseI	CAYNNNNRTG	2 cut(s)	14, 320
SacI	GAGCTC	1 cut(s)	1191
SapI	GCTCTTC	2 cut(s)	798, 1033
SatI	GCNGC	4 cut(s)	1044, 1047, 1062, 1196
Sau3AI	GATC	2 cut(s)	124, 292
Sau96I	GGNCC	1 cut(s)	737
ScaI	AGTACT	1 cut(s)	1177
SchI	GAGTC	2 cut(s)	252, 673
ScrFI	CCNGG	2 cut(s)	417, 859
SduI	GDGCHC	3 cut(s)	428, 523, 1191
SfaNI	GCATC	5 cut(s)	109, 588, 593, 797, 1077
SinI	GGWCC	1 cut(s)	737
SmiMI	CAYNNNNRTG	2 cut(s)	14, 320
SmlI	CTYRAG	2 cut(s)	649, 968
SmoI	CTYRAG	2 cut(s)	649, 968
SsiI	CCGC	1 cut(s)	1061
SspI	AATATT	2 cut(s)	148, 691
SspMI	CTAG	2 cut(s)	128, 833
SstI	GAGCTC	1 cut(s)	1191
StyD4I	CCNGG	2 cut(s)	415, 857
TaaI	ACNGT	5 cut(s)	366, 571, 631, 757, 821
TaqI	TCGA	1 cut(s)	143
TatI	WGTACW	2 cut(s)	816, 1175
TauI	GCSGC	1 cut(s)	1064
TscAI	CASTG	4 cut(s)	634, 768, 937, 1189
TseFI	GTSAC	2 cut(s)	302, 1210
TseI	GCWGC	3 cut(s)	1043, 1046, 1195
Tsp45I	GTSAC	2 cut(s)	302, 1210
TspDTI	ATGAA	9 cut(s)	338, 461, 680, 816, 881, 897, 975, 1014, 1029
TspGWI	ACGGA	1 cut(s)	1022
TspRI	CASTG	4 cut(s)	634, 768, 937, 1189
Tth111I	GACNNNGTC	1 cut(s)	755
VpaK11BI	GGWCC	1 cut(s)	737
VspI	ATTAAT	4 cut(s)	771, 1067, 1124, 1233
XapI	RAATTY	1 cut(s)	885
XbaI	TCTAGA	1 cut(s)	127
XmiI	GTMKAC	1 cut(s)	25
XmnI	GAANNNNTTC	4 cut(s)	639, 807, 840, 888
XspI	CTAG	2 cut(s)	128, 833
ZrmI	AGTACT	1 cut(s)	1177
Zsp2I	ATGCAT	1 cut(s)	581

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.