Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0013024

Physical Location & Seq

Genomic Coordinates Reverse (-)

655706 .. 656071

Gene Structure 366 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1008600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

ATGCTGCTTTCGGTGTTTTTGACGATGTTTCTGCCGTGCGTGGCGATAAGCGCGGTGTTCGTAGTGTACGTATGTTTGTTATGGTACGCTACGAACGACCAGGCCGTCAACATTGGCCTGCCTGTCAGGCAGGTTTCCGAGAATGGGTTGTCGGCGTCAGAACTCGACAATTTGCCTAAAATAACGGGGAAAGAGGTGATGGCGGAGAGGAGGGAATGTGCGGTGTGTTTGGACGATATCGAGGGAGAGCAACCGGCGCGGGTGGTTCCCGGCTGTAACCACGCCTTCCATCTGCTGTGCGCCGATACCTGGCTTTCGAAGCACTCGTTTTGCCCCGTTTGTCGAGCAAAACTTCACCCGGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

122

Amino Acids

13.35

Weight (kDa)

5.72

Isoelectric Point (pI)

45.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	72 - 115	2.2e-13	Ring finger domain
zf-RING_11	PF17123	72 - 100	1.1e-09	RING-like zinc finger
zf-C3HC4_2	PF13923	72 - 114	2e-07	Zinc finger, C3HC4 type (RING finger)
zf-rbx1	PF12678	74 - 115	8.5e-07	RING-H2 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0013024)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42200
fragaria_vesca	FvH4_2g38021
malus_domestica	MD08G1008600.v1.1 MD15G1007400.v1.1
prunus_persica	Prupe.1G360300_v2.0.a1
pyrus_communis	pycom08g00680
rosa_chinensis	RchiOBHm_Chr6g0303581
rosa_laevigata	RLG00000011067 RLG00000011071
rosa_multiflora	Rmu_ssc0000114.1_g000026
rosa_roxburghii	Rroxscaffold_7G00164610
rosa_rugosa	Rorug06G0322500
rosa_samantha	Rh6BG465900 Rh6BG466400 Rh6CG448900 Rh6DG436100
rosa_wichuraiana	Rw6G037820 Rw6G037860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	104
Acc36I	ACCTGC	1 cut(s)	121
AccII	CGCG	2 cut(s)	53, 259
AciI	CCGC	4 cut(s)	53, 203, 221, 259
AcyI	GRCGYC	1 cut(s)	155
AfaI	GTAC	2 cut(s)	68, 86
AfiI	CCNNNNNNNGG	2 cut(s)	144, 309
AjnI	CCWGG	2 cut(s)	99, 308
AoxI	GGCC	2 cut(s)	102, 115
ApeKI	GCWGC	1 cut(s)	4
AspLEI	GCGC	3 cut(s)	53, 259, 302
AsuC2I	CCSGG	2 cut(s)	270, 359
AsuHPI	GGTGA	2 cut(s)	208, 347
AsuII	TTCGAA	1 cut(s)	317
BccI	CCATC	2 cut(s)	193, 297
BceAI	ACGGC	2 cut(s)	19, 89
BcgI	CGANNNNNNTGC	2 cut(s)	13, 47
BciT130I	CCWGG	2 cut(s)	101, 310
BcnI	CCSGG	2 cut(s)	270, 359
BfuAI	ACCTGC	1 cut(s)	121
BglI	GCCNNNNNGGC	1 cut(s)	127
BisI	GCNGC	1 cut(s)	5
BlsI	GCNGC	1 cut(s)	6
Bme1390I	CCNGG	4 cut(s)	101, 270, 310, 359
BmiI	GGNNCC	1 cut(s)	267
BmrFI	CCNGG	4 cut(s)	101, 270, 310, 359
Bpu14I	TTCGAA	1 cut(s)	317
BpuMI	CCSGG	2 cut(s)	270, 359
BsaAI	YACGTR	1 cut(s)	70
BsaHI	GRCGYC	1 cut(s)	155
BsaXI	ACNNNNNCTCC	2 cut(s)	202, 232
Bsc4I	CCNNNNNNNGG	2 cut(s)	144, 309
Bse118I	RCCGGY	1 cut(s)	253
BseBI	CCWGG	2 cut(s)	101, 310
BseLI	CCNNNNNNNGG	2 cut(s)	144, 309
BseRI	GAGGAG	1 cut(s)	223
Bsh1236I	CGCG	2 cut(s)	53, 259
BshFI	GGCC	2 cut(s)	104, 117
BsiSI	CCGG	3 cut(s)	254, 270, 359
BslI	CCNNNNNNNGG	2 cut(s)	144, 309
BsnI	GGCC	2 cut(s)	104, 117
Bsp119I	TTCGAA	1 cut(s)	317
BspACI	CCGC	4 cut(s)	53, 203, 221, 259
BspANI	GGCC	2 cut(s)	104, 117
BspFNI	CGCG	2 cut(s)	53, 259
BspLI	GGNNCC	1 cut(s)	267
BspMI	ACCTGC	1 cut(s)	121
BspT104I	TTCGAA	1 cut(s)	317
BsrFI	RCCGGY	1 cut(s)	253
BssAI	RCCGGY	1 cut(s)	253
BssNI	GRCGYC	1 cut(s)	155
Bst2UI	CCWGG	2 cut(s)	101, 310
BstACI	GRCGYC	1 cut(s)	155
BstBAI	YACGTR	1 cut(s)	70
BstBI	TTCGAA	1 cut(s)	317
BstC8I	GCNNGC	1 cut(s)	119
BstFNI	CGCG	2 cut(s)	53, 259
BstHHI	GCGC	3 cut(s)	53, 259, 302
BstMWI	GCNNNNNNNGC	4 cut(s)	50, 127, 256, 319
BstNI	CCWGG	2 cut(s)	101, 310
BstSCI	CCNGG	4 cut(s)	99, 268, 308, 357
BstSNI	TACGTA	1 cut(s)	70
BstUI	CGCG	2 cut(s)	53, 259
BsuRI	GGCC	2 cut(s)	104, 117
BveI	ACCTGC	1 cut(s)	121
Cac8I	GCNNGC	1 cut(s)	119
CfoI	GCGC	3 cut(s)	53, 259, 302
Cfr10I	RCCGGY	1 cut(s)	253
CseI	GACGC	1 cut(s)	144
Csp6I	GTAC	2 cut(s)	67, 85
CviJI	RGCY	4 cut(s)	104, 117, 273, 313
CviKI_1	RGCY	4 cut(s)	104, 117, 273, 313
CviQI	GTAC	2 cut(s)	67, 85
DrdI	GACNNNNNNGTC	1 cut(s)	104
DseDI	GACNNNNNNGTC	1 cut(s)	104
EciI	GGCGGA	1 cut(s)	218
Eco105I	TACGTA	1 cut(s)	70
Eco32I	GATATC	1 cut(s)	238
EcoRII	CCWGG	2 cut(s)	99, 308
EcoRV	GATATC	1 cut(s)	238
FaiI	YATR	2 cut(s)	73, 82
FauI	CCCGC	1 cut(s)	252
Fnu4HI	GCNGC	1 cut(s)	5
Fsp4HI	GCNGC	1 cut(s)	5
GlaI	GCGC	3 cut(s)	52, 258, 301
GluI	GCNGC	1 cut(s)	5
HaeIII	GGCC	2 cut(s)	104, 117
HapII	CCGG	3 cut(s)	254, 270, 359
HgaI	GACGC	1 cut(s)	144
HhaI	GCGC	3 cut(s)	53, 259, 302
Hin1I	GRCGYC	1 cut(s)	155
Hin6I	GCGC	3 cut(s)	51, 257, 300
HinP1I	GCGC	3 cut(s)	51, 257, 300
HincII	GTYRAC	1 cut(s)	109
HindII	GTYRAC	1 cut(s)	109
HpaII	CCGG	3 cut(s)	254, 270, 359
HphI	GGTGA	2 cut(s)	208, 347
Hpy166II	GTNNAC	2 cut(s)	67, 109
Hpy188I	TCNGA	2 cut(s)	139, 160
Hpy8I	GTNNAC	2 cut(s)	67, 109
HpyAV	CCTTC	1 cut(s)	295
HpyCH4IV	ACGT	1 cut(s)	69
HpyF10VI	GCNNNNNNNGC	4 cut(s)	50, 127, 256, 319
HpySE526I	ACGT	1 cut(s)	69
Hsp92I	GRCGYC	1 cut(s)	155
HspAI	GCGC	3 cut(s)	51, 257, 300
MaeII	ACGT	1 cut(s)	69
MaeIII	GTNAC	1 cut(s)	275
MluCI	AATT	1 cut(s)	169
MnlI	CCTC	4 cut(s)	187, 201, 204, 235
MspI	CCGG	3 cut(s)	254, 270, 359
MspR9I	CCNGG	4 cut(s)	101, 270, 310, 359
MvaI	CCWGG	2 cut(s)	101, 310
MvnI	CGCG	2 cut(s)	53, 259
MwoI	GCNNNNNNNGC	4 cut(s)	50, 127, 256, 319
NciI	CCSGG	2 cut(s)	270, 359
NlaIV	GGNNCC	1 cut(s)	267
NspV	TTCGAA	1 cut(s)	317
PcsI	WCGNNNNNNNCGW	4 cut(s)	66, 93, 102, 323
PkrI	GCNGC	1 cut(s)	6
Ppu21I	YACGTR	1 cut(s)	70
Psp6I	CCWGG	2 cut(s)	99, 308
PspGI	CCWGG	2 cut(s)	99, 308
PspN4I	GGNNCC	1 cut(s)	267
RsaI	GTAC	2 cut(s)	68, 86
RsaNI	GTAC	2 cut(s)	67, 85
SatI	GCNGC	1 cut(s)	5
ScrFI	CCNGG	4 cut(s)	101, 270, 310, 359
SetI	ASST	4 cut(s)	72, 135, 198, 311
SfuI	TTCGAA	1 cut(s)	317
SnaBI	TACGTA	1 cut(s)	70
Sse9I	AATT	1 cut(s)	169
SsiI	CCGC	4 cut(s)	53, 203, 221, 259
StyD4I	CCNGG	4 cut(s)	99, 268, 308, 357
TaiI	ACGT	1 cut(s)	72
TaqI	TCGA	4 cut(s)	165, 240, 317, 343
TasI	AATT	1 cut(s)	169
TseI	GCWGC	1 cut(s)	4

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.