Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0013024

Physical Location & Seq

Genomic Coordinates Reverse (-)

404726 .. 405124

Gene Structure 399 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1007400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

ATGCTGGTTTCGGTGTTTTTGGCGATCTTTGTGCCGTGCGTGGGGATGAGCGTGGTGTTCGTAGTGTACGTCTGTCTGTTATGGTACGCTACGAACAACCAAGCCGCCAACGTTGGGCTACCTGTCAAGCAGATTTCCGAGAATGGATTGTCGGCGTCAGAACTCGACAAGCTGCCTAAAATTACGGGGAAAGAGGTGATGGCGGAGAGGAGGGAGTGCGCGGTGTGTCTGGACGATATCGAGGGAGAGCAACCGGCGCGGGTGGTTCCCGGTTGTAACCACGCCTTCCATCTGCTGTGCGCCGATACCTGGCTTTCGAAACACTCGTTTTGTCCGGTTTGTCGGGCCAAACTCCACCCGGTTGTTCAGTCTCTCGATTCGTCTGAAAATCAGTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

133

Amino Acids

14.45

Weight (kDa)

5.73

Isoelectric Point (pI)

46.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	72 - 115	2.7e-13	Ring finger domain
zf-RING_11	PF17123	72 - 100	1.2e-09	RING-like zinc finger
zf-C3HC4_2	PF13923	72 - 114	2.4e-07	Zinc finger, C3HC4 type (RING finger)
zf-rbx1	PF12678	75 - 115	9.5e-07	RING-H2 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0013024)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42200
fragaria_vesca	FvH4_2g38021
malus_domestica	MD08G1008600.v1.1 MD15G1007400.v1.1
prunus_persica	Prupe.1G360300_v2.0.a1
pyrus_communis	pycom08g00680
rosa_chinensis	RchiOBHm_Chr6g0303581
rosa_laevigata	RLG00000011067 RLG00000011071
rosa_multiflora	Rmu_ssc0000114.1_g000026
rosa_roxburghii	Rroxscaffold_7G00164610
rosa_rugosa	Rorug06G0322500
rosa_samantha	Rh6BG465900 Rh6BG466400 Rh6CG448900 Rh6DG436100
rosa_wichuraiana	Rw6G037820 Rw6G037860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	221, 259
AciI	CCGC	4 cut(s)	105, 203, 221, 259
AclI	AACGTT	1 cut(s)	111
AcyI	GRCGYC	1 cut(s)	155
AfaI	GTAC	2 cut(s)	68, 86
AfiI	CCNNNNNNNGG	3 cut(s)	41, 114, 309
AjnI	CCWGG	1 cut(s)	308
AluBI	AGCT	1 cut(s)	172
AluI	AGCT	1 cut(s)	172
Alw26I	GTCTC	1 cut(s)	375
AoxI	GGCC	1 cut(s)	345
ApeKI	GCWGC	1 cut(s)	172
AspLEI	GCGC	3 cut(s)	221, 259, 302
AspS9I	GGNCC	1 cut(s)	345
AsuC2I	CCSGG	2 cut(s)	270, 359
AsuHPI	GGTGA	1 cut(s)	208
AsuII	TTCGAA	1 cut(s)	317
BbvI	GCAGC	1 cut(s)	159
BccI	CCATC	2 cut(s)	193, 297
BceAI	ACGGC	1 cut(s)	19
BcgI	CGANNNNNNTGC	2 cut(s)	13, 47
BciT130I	CCWGG	1 cut(s)	310
BcnI	CCSGG	2 cut(s)	270, 359
BcoDI	GTCTC	1 cut(s)	375
BisI	GCNGC	2 cut(s)	105, 173
BlsI	GCNGC	2 cut(s)	106, 174
Bme1390I	CCNGG	3 cut(s)	270, 310, 359
BmgT120I	GGNCC	1 cut(s)	345
BmiI	GGNNCC	1 cut(s)	267
BmrFI	CCNGG	3 cut(s)	270, 310, 359
Bpu14I	TTCGAA	1 cut(s)	317
BpuMI	CCSGG	2 cut(s)	270, 359
BsaHI	GRCGYC	1 cut(s)	155
BsaWI	WCCGGW	1 cut(s)	334
Bsc4I	CCNNNNNNNGG	3 cut(s)	41, 114, 309
Bse118I	RCCGGY	1 cut(s)	253
BseBI	CCWGG	1 cut(s)	310
BseGI	GGATG	1 cut(s)	51
BseLI	CCNNNNNNNGG	3 cut(s)	41, 114, 309
BseRI	GAGGAG	1 cut(s)	223
BseXI	GCAGC	1 cut(s)	159
Bsh1236I	CGCG	2 cut(s)	221, 259
BshFI	GGCC	1 cut(s)	347
BsiSI	CCGG	4 cut(s)	254, 270, 335, 359
BslI	CCNNNNNNNGG	3 cut(s)	41, 114, 309
BsmAI	GTCTC	1 cut(s)	375
BsnI	GGCC	1 cut(s)	347
Bsp119I	TTCGAA	1 cut(s)	317
Bsp143I	GATC	1 cut(s)	24
BspACI	CCGC	4 cut(s)	105, 203, 221, 259
BspANI	GGCC	1 cut(s)	347
BspFNI	CGCG	2 cut(s)	221, 259
BspLI	GGNNCC	1 cut(s)	267
BspT104I	TTCGAA	1 cut(s)	317
BsrFI	RCCGGY	1 cut(s)	253
BssAI	RCCGGY	1 cut(s)	253
BssMI	GATC	1 cut(s)	24
BssNI	GRCGYC	1 cut(s)	155
Bst2UI	CCWGG	1 cut(s)	310
BstACI	GRCGYC	1 cut(s)	155
BstBI	TTCGAA	1 cut(s)	317
BstF5I	GGATG	1 cut(s)	51
BstFNI	CGCG	2 cut(s)	221, 259
BstHHI	GCGC	3 cut(s)	221, 259, 302
BstKTI	GATC	1 cut(s)	27
BstMAI	GTCTC	1 cut(s)	375
BstMBI	GATC	1 cut(s)	24
BstMWI	GCNNNNNNNGC	1 cut(s)	256
BstNI	CCWGG	1 cut(s)	310
BstSCI	CCNGG	3 cut(s)	268, 308, 357
BstUI	CGCG	2 cut(s)	221, 259
BstV1I	GCAGC	1 cut(s)	159
BsuRI	GGCC	1 cut(s)	347
BtsCI	GGATG	1 cut(s)	51
BtsIMutI	CAGTG	1 cut(s)	398
CfoI	GCGC	3 cut(s)	221, 259, 302
Cfr10I	RCCGGY	1 cut(s)	253
Cfr13I	GGNCC	1 cut(s)	345
CseI	GACGC	1 cut(s)	144
Csp6I	GTAC	2 cut(s)	67, 85
CviJI	RGCY	5 cut(s)	104, 118, 172, 313, 347
CviKI_1	RGCY	5 cut(s)	104, 118, 172, 313, 347
CviQI	GTAC	2 cut(s)	67, 85
DpnI	GATC	1 cut(s)	26
DpnII	GATC	1 cut(s)	24
EciI	GGCGGA	1 cut(s)	218
Eco32I	GATATC	1 cut(s)	238
EcoRII	CCWGG	1 cut(s)	308
EcoRV	GATATC	1 cut(s)	238
FaiI	YATR	1 cut(s)	82
FauI	CCCGC	1 cut(s)	252
Fnu4HI	GCNGC	2 cut(s)	105, 173
FokI	GGATG	1 cut(s)	58
Fsp4HI	GCNGC	2 cut(s)	105, 173
GlaI	GCGC	3 cut(s)	220, 258, 301
GluI	GCNGC	2 cut(s)	105, 173
HaeIII	GGCC	1 cut(s)	347
HapII	CCGG	4 cut(s)	254, 270, 335, 359
HgaI	GACGC	1 cut(s)	144
HhaI	GCGC	3 cut(s)	221, 259, 302
Hin1I	GRCGYC	1 cut(s)	155
Hin6I	GCGC	3 cut(s)	219, 257, 300
HinP1I	GCGC	3 cut(s)	219, 257, 300
HinfI	GANTC	1 cut(s)	377
HpaII	CCGG	4 cut(s)	254, 270, 335, 359
HphI	GGTGA	1 cut(s)	208
Hpy166II	GTNNAC	1 cut(s)	67
Hpy188I	TCNGA	3 cut(s)	139, 160, 385
Hpy188III	TCNNGA	2 cut(s)	230, 374
Hpy8I	GTNNAC	1 cut(s)	67
HpyAV	CCTTC	1 cut(s)	295
HpyCH4IV	ACGT	2 cut(s)	69, 111
HpyF10VI	GCNNNNNNNGC	1 cut(s)	256
HpySE526I	ACGT	2 cut(s)	69, 111
Hsp92I	GRCGYC	1 cut(s)	155
HspAI	GCGC	3 cut(s)	219, 257, 300
Kzo9I	GATC	1 cut(s)	24
LpnPI	CCDG	8 cut(s)	135, 215, 267, 283, 295, 322, 348, 372
Lsp1109I	GCAGC	1 cut(s)	159
MaeII	ACGT	2 cut(s)	69, 111
MaeIII	GTNAC	1 cut(s)	275
MalI	GATC	1 cut(s)	26
MboI	GATC	1 cut(s)	24
MluCI	AATT	1 cut(s)	180
MnlI	CCTC	4 cut(s)	187, 201, 204, 235
MspI	CCGG	4 cut(s)	254, 270, 335, 359
MspR9I	CCNGG	3 cut(s)	270, 310, 359
MvaI	CCWGG	1 cut(s)	310
MvnI	CGCG	2 cut(s)	221, 259
MwoI	GCNNNNNNNGC	1 cut(s)	256
NciI	CCSGG	2 cut(s)	270, 359
NdeII	GATC	1 cut(s)	24
NlaIV	GGNNCC	1 cut(s)	267
NspV	TTCGAA	1 cut(s)	317
PcsI	WCGNNNNNNNCGW	2 cut(s)	66, 323
PfeI	GAWTC	1 cut(s)	377
PkrI	GCNGC	2 cut(s)	106, 174
Psp1406I	AACGTT	1 cut(s)	111
Psp6I	CCWGG	1 cut(s)	308
PspGI	CCWGG	1 cut(s)	308
PspN4I	GGNNCC	1 cut(s)	267
PspPI	GGNCC	1 cut(s)	345
RsaI	GTAC	2 cut(s)	68, 86
RsaNI	GTAC	2 cut(s)	67, 85
SatI	GCNGC	2 cut(s)	105, 173
Sau3AI	GATC	1 cut(s)	24
Sau96I	GGNCC	1 cut(s)	345
ScrFI	CCNGG	3 cut(s)	270, 310, 359
SetI	ASST	6 cut(s)	72, 114, 124, 174, 198, 311
SfuI	TTCGAA	1 cut(s)	317
Sse9I	AATT	1 cut(s)	180
SsiI	CCGC	4 cut(s)	105, 203, 221, 259
StyD4I	CCNGG	3 cut(s)	268, 308, 357
TaiI	ACGT	2 cut(s)	72, 114
TaqI	TCGA	4 cut(s)	165, 240, 317, 375
TasI	AATT	1 cut(s)	180
TauI	GCSGC	1 cut(s)	107
TfiI	GAWTC	1 cut(s)	377
TscAI	CASTG	1 cut(s)	398
TseI	GCWGC	1 cut(s)	172
TspRI	CASTG	1 cut(s)	398

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.