Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0013024

Physical Location & Seq

Genomic Coordinates Reverse (-)

6477013 .. 6477951

Gene Structure 939 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000011071

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

ATGCTCTTCTCCATCTTCTTATTGCTTTTCCTACCCTGCGTAGGCATGAGCGCTATGTTCGTGGTCTACATCTGTCTCTTATGGTTCGCCGCCAATACCCGGTCGTCGGCGGAGCCTCGGTTACCGGTCAAGCGGGTTTCCGAGAAGGGCTTGTCGGCCTCTGATCTCGACAAGTTGCCGAAAACTAGCGGCAAAGAGCTGACCAGGGGGACGGAGTGCGCGGTGTGCCTGGAGGAGATCGAGGCAGAGCAACCGGCTCGGGTGGTTCCAGGTTGTAACCACGGCTTCCATCTCCAATGCGCCGATACCTGGCTTTCCCCCGGCTTGCATGGGATTGGTTTGGTGGCAATACGGCGGTGCATCTGGTCTGAGAAATTTGCAGTCGCACAGGTACTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

133

Amino Acids

14.51

Weight (kDa)

7.59

Isoelectric Point (pI)

50.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_11	PF17123	72 - 100	1.2e-10	RING-like zinc finger
zf-RING_2	PF13639	72 - 106	4.1e-09	Ring finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013024)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42200
fragaria_vesca	FvH4_2g38021
malus_domestica	MD08G1008600.v1.1 MD15G1007400.v1.1
prunus_persica	Prupe.1G360300_v2.0.a1
pyrus_communis	pycom08g00680
rosa_chinensis	RchiOBHm_Chr6g0303581
rosa_laevigata	RLG00000011067 RLG00000011071
rosa_multiflora	Rmu_ssc0000114.1_g000026
rosa_roxburghii	Rroxscaffold_7G00164610
rosa_rugosa	Rorug06G0322500
rosa_samantha	Rh6BG465900 Rh6BG466400 Rh6CG448900 Rh6DG436100
rosa_wichuraiana	Rw6G037820 Rw6G037860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	66
AccII	CGCG	1 cut(s)	221
AciI	CCGC	6 cut(s)	90, 110, 133, 189, 221, 355
AcsI	RAATTY	1 cut(s)	374
AfaI	GTAC	1 cut(s)	393
AfeI	AGCGCT	1 cut(s)	52
AfiI	CCNNNNNNNGG	4 cut(s)	41, 99, 106, 309
AgeI	ACCGGT	1 cut(s)	124
AjnI	CCWGG	4 cut(s)	203, 228, 268, 308
AluBI	AGCT	1 cut(s)	199
AluI	AGCT	1 cut(s)	199
Alw26I	GTCTC	1 cut(s)	80
Ama87I	CYCGRG	1 cut(s)	258
Aor51HI	AGCGCT	1 cut(s)	52
AoxI	GGCC	1 cut(s)	156
ApoI	RAATTY	1 cut(s)	374
AsiGI	ACCGGT	1 cut(s)	124
AspLEI	GCGC	3 cut(s)	53, 221, 302
AsuC2I	CCSGG	2 cut(s)	100, 321
AvaI	CYCGRG	1 cut(s)	258
BccI	CCATC	2 cut(s)	20, 297
BceAI	ACGGC	2 cut(s)	298, 368
BcgI	CGANNNNNNTGC	2 cut(s)	239, 273
BciT130I	CCWGG	4 cut(s)	205, 230, 270, 310
BcnI	CCSGG	2 cut(s)	100, 321
BcoDI	GTCTC	1 cut(s)	80
BfaI	CTAG	2 cut(s)	186, 397
BfoI	RGCGCY	1 cut(s)	54
BisI	GCNGC	2 cut(s)	90, 190
BlsI	GCNGC	2 cut(s)	91, 191
Bme1390I	CCNGG	6 cut(s)	100, 205, 230, 270, 310, 321
BmeT110I	CYCGRG	1 cut(s)	258
BmiI	GGNNCC	2 cut(s)	114, 267
BmrFI	CCNGG	6 cut(s)	100, 205, 230, 270, 310, 321
BmsI	GCATC	1 cut(s)	369
BpmI	CTGGAG	1 cut(s)	251
BpuMI	CCSGG	2 cut(s)	100, 321
BsaJI	CCNNGG	4 cut(s)	116, 204, 280, 319
BsaWI	WCCGGW	1 cut(s)	124
BsaXI	ACNNNNNCTCC	2 cut(s)	104, 134
Bsc4I	CCNNNNNNNGG	4 cut(s)	41, 99, 106, 309
Bse118I	RCCGGY	2 cut(s)	124, 253
BseBI	CCWGG	4 cut(s)	205, 230, 270, 310
BseDI	CCNNGG	4 cut(s)	116, 204, 280, 319
BseLI	CCNNNNNNNGG	4 cut(s)	41, 99, 106, 309
BseMII	CTCAG	1 cut(s)	360
BseRI	GAGGAG	1 cut(s)	248
Bsh1236I	CGCG	1 cut(s)	221
Bsh1285I	CGRYCG	1 cut(s)	104
BshFI	GGCC	1 cut(s)	158
BshTI	ACCGGT	1 cut(s)	124
BsiEI	CGRYCG	1 cut(s)	104
BsiHKCI	CYCGRG	1 cut(s)	258
BsiSI	CCGG	4 cut(s)	100, 125, 254, 321
BslFI	GGGAC	1 cut(s)	223
BslI	CCNNNNNNNGG	4 cut(s)	41, 99, 106, 309
BsmAI	GTCTC	1 cut(s)	80
BsmFI	GGGAC	1 cut(s)	223
BsnI	GGCC	1 cut(s)	158
BsoBI	CYCGRG	1 cut(s)	258
Bsp143I	GATC	2 cut(s)	163, 237
BspACI	CCGC	6 cut(s)	90, 110, 133, 189, 221, 355
BspANI	GGCC	1 cut(s)	158
BspCNI	CTCAG	1 cut(s)	361
BspFNI	CGCG	1 cut(s)	221
BspLI	GGNNCC	2 cut(s)	114, 267
BspQI	GCTCTTC	1 cut(s)	11
BsrFI	RCCGGY	2 cut(s)	124, 253
BssAI	RCCGGY	2 cut(s)	124, 253
BssECI	CCNNGG	4 cut(s)	116, 204, 280, 319
BssMI	GATC	2 cut(s)	163, 237
Bst2UI	CCWGG	4 cut(s)	205, 230, 270, 310
Bst6I	CTCTTC	1 cut(s)	11
BstC8I	GCNNGC	1 cut(s)	326
BstDEI	CTNAG	1 cut(s)	369
BstDSI	CCRYGG	1 cut(s)	280
BstEII	GGTNACC	1 cut(s)	120
BstFNI	CGCG	1 cut(s)	221
BstH2I	RGCGCY	1 cut(s)	54
BstHHI	GCGC	3 cut(s)	53, 221, 302
BstKTI	GATC	2 cut(s)	166, 240
BstMAI	GTCTC	1 cut(s)	80
BstMBI	GATC	2 cut(s)	163, 237
BstMCI	CGRYCG	1 cut(s)	104
BstMWI	GCNNNNNNNGC	1 cut(s)	225
BstNI	CCWGG	4 cut(s)	205, 230, 270, 310
BstPI	GGTNACC	1 cut(s)	120
BstSCI	CCNGG	6 cut(s)	98, 203, 228, 268, 308, 319
BstUI	CGCG	1 cut(s)	221
BsuRI	GGCC	1 cut(s)	158
BtgI	CCRYGG	1 cut(s)	280
Cac8I	GCNNGC	1 cut(s)	326
CfoI	GCGC	3 cut(s)	53, 221, 302
Cfr10I	RCCGGY	2 cut(s)	124, 253
Csp6I	GTAC	1 cut(s)	392
CspAI	ACCGGT	1 cut(s)	124
CviAII	CATG	2 cut(s)	46, 329
CviJI	RGCY	8 cut(s)	115, 150, 158, 199, 257, 285, 313, 324
CviKI_1	RGCY	8 cut(s)	115, 150, 158, 199, 257, 285, 313, 324
CviQI	GTAC	1 cut(s)	392
DdeI	CTNAG	1 cut(s)	369
DpnI	GATC	2 cut(s)	165, 239
DpnII	GATC	2 cut(s)	163, 237
Eam1104I	CTCTTC	1 cut(s)	11
EarI	CTCTTC	1 cut(s)	11
EciI	GGCGGA	1 cut(s)	125
Eco47III	AGCGCT	1 cut(s)	52
Eco88I	CYCGRG	1 cut(s)	258
Eco91I	GGTNACC	1 cut(s)	120
EcoO65I	GGTNACC	1 cut(s)	120
EcoRII	CCWGG	4 cut(s)	203, 228, 268, 308
FaeI	CATG	2 cut(s)	49, 332
FaiI	YATR	4 cut(s)	47, 56, 82, 330
FaqI	GGGAC	1 cut(s)	223
FatI	CATG	2 cut(s)	45, 328
FauI	CCCGC	1 cut(s)	126
FblI	GTMKAC	1 cut(s)	66
Fnu4HI	GCNGC	2 cut(s)	90, 190
Fsp4HI	GCNGC	2 cut(s)	90, 190
FspBI	CTAG	2 cut(s)	186, 397
GlaI	GCGC	3 cut(s)	52, 220, 301
GluI	GCNGC	2 cut(s)	90, 190
GsuI	CTGGAG	1 cut(s)	251
HaeII	RGCGCY	1 cut(s)	54
HaeIII	GGCC	1 cut(s)	158
HapII	CCGG	4 cut(s)	100, 125, 254, 321
HhaI	GCGC	3 cut(s)	53, 221, 302
Hin1II	CATG	2 cut(s)	49, 332
Hin6I	GCGC	3 cut(s)	51, 219, 300
HinP1I	GCGC	3 cut(s)	51, 219, 300
HpaII	CCGG	4 cut(s)	100, 125, 254, 321
Hpy166II	GTNNAC	1 cut(s)	67
Hpy188I	TCNGA	3 cut(s)	142, 163, 370
Hpy188III	TCNNGA	1 cut(s)	167
Hpy8I	GTNNAC	1 cut(s)	67
Hpy99I	CGWCG	1 cut(s)	109
HpyAV	CCTTC	1 cut(s)	139
HpyCH4V	TGCA	3 cut(s)	328, 360, 380
HpyF10VI	GCNNNNNNNGC	1 cut(s)	225
HpyF3I	CTNAG	1 cut(s)	369
Hsp92II	CATG	2 cut(s)	49, 332
HspAI	GCGC	3 cut(s)	51, 219, 300
Kzo9I	GATC	2 cut(s)	163, 237
LguI	GCTCTTC	1 cut(s)	11
LmnI	GCTCC	1 cut(s)	112
LweI	GCATC	1 cut(s)	369
MaeI	CTAG	2 cut(s)	186, 397
MaeIII	GTNAC	2 cut(s)	120, 275
MalI	GATC	2 cut(s)	165, 239
MboI	GATC	2 cut(s)	163, 237
MboII	GAAGA	1 cut(s)	7
MluCI	AATT	1 cut(s)	374
MnlI	CCTC	4 cut(s)	126, 169, 226, 235
MspI	CCGG	4 cut(s)	100, 125, 254, 321
MspR9I	CCNGG	6 cut(s)	100, 205, 230, 270, 310, 321
MvaI	CCWGG	4 cut(s)	205, 230, 270, 310
MvnI	CGCG	1 cut(s)	221
MwoI	GCNNNNNNNGC	1 cut(s)	225
NciI	CCSGG	2 cut(s)	100, 321
NdeII	GATC	2 cut(s)	163, 237
NlaIII	CATG	2 cut(s)	49, 332
NlaIV	GGNNCC	2 cut(s)	114, 267
PciSI	GCTCTTC	1 cut(s)	11
PinAI	ACCGGT	1 cut(s)	124
PkrI	GCNGC	2 cut(s)	91, 191
Psp6I	CCWGG	4 cut(s)	203, 228, 268, 308
PspEI	GGTNACC	1 cut(s)	120
PspGI	CCWGG	4 cut(s)	203, 228, 268, 308
PspN4I	GGNNCC	2 cut(s)	114, 267
RsaI	GTAC	1 cut(s)	393
RsaNI	GTAC	1 cut(s)	392
SapI	GCTCTTC	1 cut(s)	11
SatI	GCNGC	2 cut(s)	90, 190
Sau3AI	GATC	2 cut(s)	163, 237
ScrFI	CCNGG	6 cut(s)	100, 205, 230, 270, 310, 321
SetI	ASST	4 cut(s)	201, 274, 311, 393
SfaNI	GCATC	1 cut(s)	369
Sse9I	AATT	1 cut(s)	374
SsiI	CCGC	6 cut(s)	90, 110, 133, 189, 221, 355
SspMI	CTAG	2 cut(s)	186, 397
StyD4I	CCNGG	6 cut(s)	98, 203, 228, 268, 308, 319
TaqI	TCGA	2 cut(s)	168, 240
TasI	AATT	1 cut(s)	374
TauI	GCSGC	2 cut(s)	92, 192
TspGWI	ACGGA	1 cut(s)	227
XapI	RAATTY	1 cut(s)	374
XmiI	GTMKAC	1 cut(s)	66
XspI	CTAG	2 cut(s)	186, 397

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.