Rw6G037860

E3 ubiquitin-protein ligase ATL23-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0013024
Physical Location & Seq
Reverse (-)
62112475 .. 62112696
222 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G037860.1

Sequence Viewer

Length: 222 bp
ATGAGCGGGAAAGAGCTGACAATGGACACACGGTACGCCATCTGCCTGGATGAGATTGAAGCAGAACAACCGACTCGGGTGGTTCCCGGTTGCAACCATGGCTTCCATCTCCAGTGCGCCGACGCCTGGCTTGCCAAGCAATCAATCTGTCCGGTTTGTCGTGGCAAACTCCGTCATCACCAGTTTCACAGTTCATTATCATCTACAGAAAATCCACGCTAA

Protein Analysis

73

Amino Acids

8.24

Weight (kDa)

6.94

Isoelectric Point (pI)

58.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RING_2 PF13639 13 - 54 9.3e-14 Ring finger domain
zf-RING_11 PF17123 13 - 39 1.5e-09 RING-like zinc finger
zf-C3HC4_2 PF13923 13 - 53 9.6e-08 Zinc finger, C3HC4 type (RING finger)
zf-C3HC4 PF00097 13 - 53 8.2e-06 Zinc finger, C3HC4 type (RING finger)
zf-rbx1 PF12678 24 - 54 6.6e-09 RING-H2 zinc finger domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0013024)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G42200
fragaria_vesca FvH4_2g38021
malus_domestica MD08G1008600.v1.1 MD15G1007400.v1.1
prunus_persica Prupe.1G360300_v2.0.a1
pyrus_communis pycom08g00680
rosa_chinensis RchiOBHm_Chr6g0303581
rosa_laevigata RLG00000011067 RLG00000011071
rosa_multiflora Rmu_ssc0000114.1_g000026
rosa_roxburghii Rroxscaffold_7G00164610
rosa_rugosa Rorug06G0322500
rosa_samantha Rh6BG465900 Rh6BG466400 Rh6CG448900 Rh6DG436100
rosa_wichuraiana Rw6G037820 Rw6G037860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 6
AciI CCGC 1 cut(s) 6
AcyI GRCGYC 1 cut(s) 123
AfaI GTAC 1 cut(s) 35
AfiI CCNNNNNNNGG 1 cut(s) 126
AgsI TTSAA 1 cut(s) 59
AjnI CCWGG 2 cut(s) 45, 125
AluBI AGCT 1 cut(s) 16
AluI AGCT 1 cut(s) 16
Ama87I CYCGRG 1 cut(s) 75
AspLEI GCGC 1 cut(s) 119
AsuC2I CCSGG 1 cut(s) 87
AsuHPI GGTGA 1 cut(s) 170
AvaI CYCGRG 1 cut(s) 75
BccI CCATC 2 cut(s) 47, 114
BciT130I CCWGG 2 cut(s) 47, 127
BcnI CCSGG 1 cut(s) 87
BfmI CTRYAG 1 cut(s) 204
Bme1390I CCNGG 3 cut(s) 47, 87, 127
BmeT110I CYCGRG 1 cut(s) 75
BmiI GGNNCC 1 cut(s) 84
BmrFI CCNGG 3 cut(s) 47, 87, 127
BpmI CTGGAG 1 cut(s) 95
BpuMI CCSGG 1 cut(s) 87
BsaHI GRCGYC 1 cut(s) 123
BsaJI CCNNGG 1 cut(s) 97
BsaWI WCCGGW 1 cut(s) 151
Bsc4I CCNNNNNNNGG 1 cut(s) 126
Bse1I ACTGG 2 cut(s) 112, 181
BseBI CCWGG 2 cut(s) 47, 127
BseDI CCNNGG 1 cut(s) 97
BseGI GGATG 1 cut(s) 55
BseLI CCNNNNNNNGG 1 cut(s) 126
BseNI ACTGG 2 cut(s) 112, 181
BsiHKCI CYCGRG 1 cut(s) 75
BsiSI CCGG 2 cut(s) 87, 152
BslI CCNNNNNNNGG 1 cut(s) 126
BsoBI CYCGRG 1 cut(s) 75
Bsp19I CCATGG 1 cut(s) 97
BspACI CCGC 1 cut(s) 6
BspLI GGNNCC 1 cut(s) 84
BsrBI CCGCTC 1 cut(s) 6
BsrI ACTGG 2 cut(s) 112, 181
BssECI CCNNGG 1 cut(s) 97
BssNI GRCGYC 1 cut(s) 123
BssT1I CCWWGG 1 cut(s) 97
Bst2UI CCWGG 2 cut(s) 47, 127
Bst4CI ACNGT 2 cut(s) 33, 191
BstACI GRCGYC 1 cut(s) 123
BstC8I GCNNGC 1 cut(s) 132
BstDSI CCRYGG 1 cut(s) 97
BstF5I GGATG 1 cut(s) 55
BstHHI GCGC 1 cut(s) 119
BstMWI GCNNNNNNNGC 3 cut(s) 99, 131, 136
BstNI CCWGG 2 cut(s) 47, 127
BstSCI CCNGG 3 cut(s) 45, 85, 125
BstSFI CTRYAG 1 cut(s) 204
BstXI CCANNNNNNTGG 1 cut(s) 46
BtgI CCRYGG 1 cut(s) 97
BtsCI GGATG 1 cut(s) 55
BtsIMutI CAGTG 1 cut(s) 119
Cac8I GCNNGC 1 cut(s) 132
CfoI GCGC 1 cut(s) 119
CseI GACGC 1 cut(s) 131
Csp6I GTAC 1 cut(s) 34
CviAII CATG 1 cut(s) 98
CviJI RGCY 3 cut(s) 16, 102, 130
CviKI_1 RGCY 3 cut(s) 16, 102, 130
CviQI GTAC 1 cut(s) 34
Eco130I CCWWGG 1 cut(s) 97
Eco88I CYCGRG 1 cut(s) 75
EcoRII CCWGG 2 cut(s) 45, 125
EcoT14I CCWWGG 1 cut(s) 97
ErhI CCWWGG 1 cut(s) 97
FaeI CATG 1 cut(s) 101
FaiI YATR 1 cut(s) 99
FatI CATG 1 cut(s) 97
FokI GGATG 1 cut(s) 62
GlaI GCGC 1 cut(s) 118
GsuI CTGGAG 1 cut(s) 95
HapII CCGG 2 cut(s) 87, 152
HgaI GACGC 1 cut(s) 131
HhaI GCGC 1 cut(s) 119
Hin1I GRCGYC 1 cut(s) 123
Hin1II CATG 1 cut(s) 101
Hin6I GCGC 1 cut(s) 117
HinP1I GCGC 1 cut(s) 117
HinfI GANTC 1 cut(s) 73
HpaII CCGG 2 cut(s) 87, 152
HphI GGTGA 1 cut(s) 170
Hpy99I CGWCG 1 cut(s) 125
HpyCH4III ACNGT 2 cut(s) 33, 191
HpyCH4V TGCA 1 cut(s) 93
HpyF10VI GCNNNNNNNGC 3 cut(s) 99, 131, 136
Hsp92I GRCGYC 1 cut(s) 123
Hsp92II CATG 1 cut(s) 101
HspAI GCGC 1 cut(s) 117
LpnPI CCDG 8 cut(s) 32, 59, 100, 112, 125, 139, 165, 194
MbiI CCGCTC 1 cut(s) 6
MlyI GAGTC 1 cut(s) 67
MspI CCGG 2 cut(s) 87, 152
MspR9I CCNGG 3 cut(s) 47, 87, 127
MvaI CCWGG 2 cut(s) 47, 127
MwoI GCNNNNNNNGC 3 cut(s) 99, 131, 136
NciI CCSGG 1 cut(s) 87
NcoI CCATGG 1 cut(s) 97
NlaIII CATG 1 cut(s) 101
NlaIV GGNNCC 1 cut(s) 84
PleI GAGTC 1 cut(s) 67
PpsI GAGTC 1 cut(s) 67
Psp6I CCWGG 2 cut(s) 45, 125
PspGI CCWGG 2 cut(s) 45, 125
PspN4I GGNNCC 1 cut(s) 84
RsaI GTAC 1 cut(s) 35
RsaNI GTAC 1 cut(s) 34
SchI GAGTC 1 cut(s) 67
ScrFI CCNGG 3 cut(s) 47, 87, 127
SetI ASST 1 cut(s) 18
SfcI CTRYAG 1 cut(s) 204
SsiI CCGC 1 cut(s) 6
StyD4I CCNGG 3 cut(s) 45, 85, 125
StyI CCWWGG 1 cut(s) 97
TaaI ACNGT 2 cut(s) 33, 191
TscAI CASTG 1 cut(s) 119
TspDTI ATGAA 1 cut(s) 183
TspGWI ACGGA 1 cut(s) 161
TspRI CASTG 1 cut(s) 119
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.