Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0013024

Physical Location & Seq

Genomic Coordinates Forward (+)

6455851 .. 6457291

Gene Structure 1441 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000011067

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGACTTTGGAGAAAGCACGGTCTGACATTAGAGATGTGGGGTCCGGGCAACTTCCTGTGCTCCAAGAACAGATTGAAGAGAGCTCAATGATTATGGCCCCCGCATCGGTGATGTCTCGAAAGGAGGTTGTGAAGTTCTCCTCGATGCAAGTGGTGCTAGTGGGGAGGAAAAGGAAGGACAAAGTTGGCAAACCAGTGACGGGATTGGAGGAGACGAATGTGACTACTCCTGCAATGGAACTCGCAGTTATGGAGATACAGGTGGAATCCCAGTCGGATTCCAACAACGGCTTGTCGTCTGCCGAGCTAGAGAAGCTACCGAAAATGAGCTGGAAAGGGCTGGCAATGGACACACAGTGCGCCATCTGCAGCCTGGATGAGATTGAAGCAGAACAACCGGCTCAGGTGGTTCCCGGTTGCAACCATGGCTTCCATCTCCAGTGCGCCGACGCCTGGCTTGCCAAGCAATCAATCTGTCCGGTTTGTCGTGGCAAACTCCGTCCTCACCAGTTTCACAGTTCATTATCATCTACAGAAAATCCATGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

183

Amino Acids

19.88

Weight (kDa)

5.61

Isoelectric Point (pI)

57.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-rbx1	PF12678	117 - 163	8e-08	RING-H2 zinc finger domain
zf-RING_2	PF13639	119 - 163	3.2e-13	Ring finger domain
zf-RING_11	PF17123	119 - 148	4.3e-07	RING-like zinc finger
zf-C3HC4_2	PF13923	119 - 162	9.8e-06	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013024)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42200
fragaria_vesca	FvH4_2g38021
malus_domestica	MD08G1008600.v1.1 MD15G1007400.v1.1
prunus_persica	Prupe.1G360300_v2.0.a1
pyrus_communis	pycom08g00680
rosa_chinensis	RchiOBHm_Chr6g0303581
rosa_laevigata	RLG00000011067 RLG00000011071
rosa_multiflora	Rmu_ssc0000114.1_g000026
rosa_roxburghii	Rroxscaffold_7G00164610
rosa_rugosa	Rorug06G0322500
rosa_samantha	Rh6BG465900 Rh6BG466400 Rh6CG448900 Rh6DG436100
rosa_wichuraiana	Rw6G037820 Rw6G037860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	102
AcyI	GRCGYC	1 cut(s)	450
AdeI	CACNNNGTG	1 cut(s)	357
AfiI	CCNNNNNNNGG	3 cut(s)	106, 200, 453
AgsI	TTSAA	2 cut(s)	77, 386
AjnI	CCWGG	2 cut(s)	372, 452
AluBI	AGCT	4 cut(s)	84, 307, 316, 330
AluI	AGCT	4 cut(s)	84, 307, 316, 330
Alw21I	GWGCWC	2 cut(s)	63, 86
Alw26I	GTCTC	2 cut(s)	120, 206
AoxI	GGCC	1 cut(s)	96
ApeKI	GCWGC	1 cut(s)	369
AspLEI	GCGC	2 cut(s)	362, 446
AspS9I	GGNCC	2 cut(s)	42, 97
AsuC2I	CCSGG	2 cut(s)	46, 414
AsuHPI	GGTGA	2 cut(s)	121, 497
AvaII	GGWCC	1 cut(s)	42
BanII	GRGCYC	1 cut(s)	86
Bbv12I	GWGCWC	2 cut(s)	63, 86
BbvI	GCAGC	1 cut(s)	381
BccI	CCATC	2 cut(s)	371, 441
BceAI	ACGGC	1 cut(s)	304
BciT130I	CCWGG	2 cut(s)	374, 454
BcnI	CCSGG	2 cut(s)	46, 414
BcoDI	GTCTC	2 cut(s)	120, 206
BfaI	CTAG	2 cut(s)	158, 308
BfmI	CTRYAG	2 cut(s)	367, 531
BisI	GCNGC	1 cut(s)	370
BlsI	GCNGC	1 cut(s)	371
Bme1390I	CCNGG	4 cut(s)	46, 374, 414, 454
Bme18I	GGWCC	1 cut(s)	42
BmgT120I	GGNCC	2 cut(s)	42, 97
BmiI	GGNNCC	3 cut(s)	43, 99, 411
BmrFI	CCNGG	4 cut(s)	46, 374, 414, 454
BmrI	ACTGGG	1 cut(s)	265
BmsI	GCATC	2 cut(s)	113, 135
BmuI	ACTGGG	1 cut(s)	265
BpmI	CTGGAG	1 cut(s)	422
Bpu10I	CCTNAGC	1 cut(s)	402
BpuMI	CCSGG	2 cut(s)	46, 414
BsaHI	GRCGYC	1 cut(s)	450
BsaJI	CCNNGG	1 cut(s)	424
BsaWI	WCCGGW	1 cut(s)	478
Bsc4I	CCNNNNNNNGG	3 cut(s)	106, 200, 453
Bse118I	RCCGGY	1 cut(s)	397
Bse1I	ACTGG	4 cut(s)	194, 271, 439, 508
Bse3DI	GCAATG	2 cut(s)	240, 351
BseBI	CCWGG	2 cut(s)	374, 454
BseDI	CCNNGG	1 cut(s)	424
BseGI	GGATG	1 cut(s)	382
BseLI	CCNNNNNNNGG	3 cut(s)	106, 200, 453
BseMI	GCAATG	2 cut(s)	240, 351
BseMII	CTCAG	1 cut(s)	416
BseNI	ACTGG	4 cut(s)	194, 271, 439, 508
BseRI	GAGGAG	2 cut(s)	130, 224
BseXI	GCAGC	1 cut(s)	381
BshFI	GGCC	1 cut(s)	98
BsiHKAI	GWGCWC	2 cut(s)	63, 86
BsiSI	CCGG	4 cut(s)	45, 398, 414, 479
BslI	CCNNNNNNNGG	3 cut(s)	106, 200, 453
BsmAI	GTCTC	2 cut(s)	120, 206
BsmBI	CGTCTC	1 cut(s)	206
BsnI	GGCC	1 cut(s)	98
Bsp1286I	GDGCHC	2 cut(s)	63, 86
Bsp19I	CCATGG	1 cut(s)	424
BspACI	CCGC	1 cut(s)	102
BspANI	GGCC	1 cut(s)	98
BspCNI	CTCAG	1 cut(s)	415
BspLI	GGNNCC	3 cut(s)	43, 99, 411
BspMAI	CTGCAG	1 cut(s)	371
BsrDI	GCAATG	2 cut(s)	240, 351
BsrFI	RCCGGY	1 cut(s)	397
BsrI	ACTGG	4 cut(s)	194, 271, 439, 508
BssAI	RCCGGY	1 cut(s)	397
BssECI	CCNNGG	1 cut(s)	424
BssNI	GRCGYC	1 cut(s)	450
BssT1I	CCWWGG	1 cut(s)	424
Bst2UI	CCWGG	2 cut(s)	374, 454
Bst4CI	ACNGT	3 cut(s)	21, 357, 518
Bst6I	CTCTTC	1 cut(s)	72
BstACI	GRCGYC	1 cut(s)	450
BstAPI	GCANNNNNTGC	1 cut(s)	154
BstC8I	GCNNGC	2 cut(s)	342, 459
BstDEI	CTNAG	1 cut(s)	402
BstDSI	CCRYGG	1 cut(s)	424
BstF5I	GGATG	1 cut(s)	382
BstHHI	GCGC	2 cut(s)	362, 446
BstMAI	GTCTC	2 cut(s)	120, 206
BstMWI	GCNNNNNNNGC	6 cut(s)	154, 313, 366, 426, 458, 463
BstNI	CCWGG	2 cut(s)	374, 454
BstSCI	CCNGG	4 cut(s)	44, 372, 412, 452
BstSFI	CTRYAG	2 cut(s)	367, 531
BstV1I	GCAGC	1 cut(s)	381
BsuRI	GGCC	1 cut(s)	98
BtgI	CCRYGG	1 cut(s)	424
BtsCI	GGATG	1 cut(s)	382
BtsIMutI	CAGTG	3 cut(s)	201, 362, 446
Cac8I	GCNNGC	2 cut(s)	342, 459
CfoI	GCGC	2 cut(s)	362, 446
Cfr10I	RCCGGY	1 cut(s)	397
Cfr13I	GGNCC	2 cut(s)	42, 97
CseI	GACGC	1 cut(s)	458
CviAII	CATG	2 cut(s)	425, 543
DdeI	CTNAG	1 cut(s)	402
DraIII	CACNNNGTG	1 cut(s)	357
Eam1104I	CTCTTC	1 cut(s)	72
EarI	CTCTTC	1 cut(s)	72
Ecl136II	GAGCTC	1 cut(s)	84
Eco130I	CCWWGG	1 cut(s)	424
Eco24I	GRGCYC	1 cut(s)	86
Eco47I	GGWCC	1 cut(s)	42
Eco53kI	GAGCTC	1 cut(s)	84
EcoICRI	GAGCTC	1 cut(s)	84
EcoRII	CCWGG	2 cut(s)	372, 452
EcoT14I	CCWWGG	1 cut(s)	424
EcoT38I	GRGCYC	1 cut(s)	86
ErhI	CCWWGG	1 cut(s)	424
Esp3I	CGTCTC	1 cut(s)	206
FaeI	CATG	2 cut(s)	428, 546
FaiI	YATR	4 cut(s)	95, 251, 426, 544
FatI	CATG	2 cut(s)	424, 542
FauI	CCCGC	1 cut(s)	109
Fnu4HI	GCNGC	1 cut(s)	370
FokI	GGATG	1 cut(s)	389
FriOI	GRGCYC	1 cut(s)	86
Fsp4HI	GCNGC	1 cut(s)	370
FspBI	CTAG	2 cut(s)	158, 308
GlaI	GCGC	2 cut(s)	361, 445
GluI	GCNGC	1 cut(s)	370
GsuI	CTGGAG	1 cut(s)	422
HaeIII	GGCC	1 cut(s)	98
HapII	CCGG	4 cut(s)	45, 398, 414, 479
HgaI	GACGC	1 cut(s)	458
HhaI	GCGC	2 cut(s)	362, 446
Hin1I	GRCGYC	1 cut(s)	450
Hin1II	CATG	2 cut(s)	428, 546
Hin6I	GCGC	2 cut(s)	360, 444
HinP1I	GCGC	2 cut(s)	360, 444
HinfI	GANTC	2 cut(s)	266, 278
HpaII	CCGG	4 cut(s)	45, 398, 414, 479
HphI	GGTGA	2 cut(s)	121, 497
Hpy188I	TCNGA	2 cut(s)	25, 277
Hpy188III	TCNNGA	1 cut(s)	117
Hpy99I	CGWCG	1 cut(s)	452
HpyAV	CCTTC	1 cut(s)	169
HpyCH4III	ACNGT	3 cut(s)	21, 357, 518
HpyCH4V	TGCA	4 cut(s)	148, 233, 369, 420
HpyF10VI	GCNNNNNNNGC	6 cut(s)	154, 313, 366, 426, 458, 463
HpyF3I	CTNAG	1 cut(s)	402
Hsp92I	GRCGYC	1 cut(s)	450
Hsp92II	CATG	2 cut(s)	428, 546
HspAI	GCGC	2 cut(s)	360, 444
LmnI	GCTCC	1 cut(s)	66
Lsp1109I	GCAGC	1 cut(s)	381
LweI	GCATC	2 cut(s)	113, 135
MaeI	CTAG	2 cut(s)	158, 308
MaeIII	GTNAC	2 cut(s)	196, 220
MboII	GAAGA	1 cut(s)	89
MhlI	GDGCHC	2 cut(s)	63, 86
MmeI	TCCRAC	2 cut(s)	255, 306
MnlI	CCTC	5 cut(s)	118, 151, 159, 202, 513
MspI	CCGG	4 cut(s)	45, 398, 414, 479
MspR9I	CCNGG	4 cut(s)	46, 374, 414, 454
MvaI	CCWGG	2 cut(s)	374, 454
MwoI	GCNNNNNNNGC	6 cut(s)	154, 313, 366, 426, 458, 463
NciI	CCSGG	2 cut(s)	46, 414
NcoI	CCATGG	1 cut(s)	424
NlaIII	CATG	2 cut(s)	428, 546
NlaIV	GGNNCC	3 cut(s)	43, 99, 411
NmeAIII	GCCGAG	1 cut(s)	328
NmuCI	GTSAC	2 cut(s)	196, 220
PfeI	GAWTC	2 cut(s)	266, 278
PkrI	GCNGC	1 cut(s)	371
Psp124BI	GAGCTC	1 cut(s)	86
Psp6I	CCWGG	2 cut(s)	372, 452
PspGI	CCWGG	2 cut(s)	372, 452
PspN4I	GGNNCC	3 cut(s)	43, 99, 411
PspPI	GGNCC	2 cut(s)	42, 97
PstI	CTGCAG	1 cut(s)	371
SacI	GAGCTC	1 cut(s)	86
SatI	GCNGC	1 cut(s)	370
Sau96I	GGNCC	2 cut(s)	42, 97
ScrFI	CCNGG	4 cut(s)	46, 374, 414, 454
SduI	GDGCHC	2 cut(s)	63, 86
SetI	ASST	7 cut(s)	86, 129, 264, 309, 318, 332, 408
SfaNI	GCATC	2 cut(s)	113, 135
SfcI	CTRYAG	2 cut(s)	367, 531
SinI	GGWCC	1 cut(s)	42
SsiI	CCGC	1 cut(s)	102
SspMI	CTAG	2 cut(s)	158, 308
SstI	GAGCTC	1 cut(s)	86
StyD4I	CCNGG	4 cut(s)	44, 372, 412, 452
StyI	CCWWGG	1 cut(s)	424
TaaI	ACNGT	3 cut(s)	21, 357, 518
TaqI	TCGA	2 cut(s)	118, 143
TfiI	GAWTC	2 cut(s)	266, 278
TscAI	CASTG	3 cut(s)	201, 362, 446
TseFI	GTSAC	2 cut(s)	196, 220
TseI	GCWGC	1 cut(s)	369
Tsp45I	GTSAC	2 cut(s)	196, 220
TspDTI	ATGAA	1 cut(s)	510
TspGWI	ACGGA	1 cut(s)	488
TspRI	CASTG	3 cut(s)	201, 362, 446
VpaK11BI	GGWCC	1 cut(s)	42
XcmI	CCANNNNNNNNNTGG	1 cut(s)	370
XspI	CTAG	2 cut(s)	158, 308

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.