Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0013024

Physical Location & Seq

Genomic Coordinates Reverse (-)

6558879 .. 6560570

Gene Structure 1692 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00164610.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGGGTTTTGGTCCAAGCATCGTGACGATGTCGGCTACAATCGGCTCCGAAGGCATGAGCGCTGTGTTCGTGGTCTACACATGTCTCTTATGGTTCGCCGCCAATACCCGGTCGTCGGCAGAGCCTCGGTTACCGGTCAAGCGGGTTTCCGAGAAGGGCTTGTCGGCCTCTGATCTCGACAAGTTGCCGAAAACTAGCGGCAAAGAGCTGACCAGGGGGACGGAGTGCGCGGTGTGCCTGGAGGAGATCGAGGCAGAGCAACCGGCTCGGGTGGTTCCAGGTTGTAACCACGGCTTCCATCTCCAATGCGCCGATACCTGGCTTTCTAAGCAGTCATTCTGTCCGGTTTGTAGAGCCAAACTCCAACCTCAGCAGTTTCTCACTTCCTCTGATGAAAATAATGCTAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

136

Amino Acids

14.69

Weight (kDa)

6.1

Isoelectric Point (pI)

61.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	75 - 118	7.9e-14	Ring finger domain
zf-RING_11	PF17123	75 - 103	1.3e-10	RING-like zinc finger
zf-C3HC4_2	PF13923	75 - 117	6.1e-08	Zinc finger, C3HC4 type (RING finger)
zf-rbx1	PF12678	76 - 118	1.6e-07	RING-H2 zinc finger domain
zf-C3HC4	PF00097	76 - 117	3.4e-06	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0013024)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42200
fragaria_vesca	FvH4_2g38021
malus_domestica	MD08G1008600.v1.1 MD15G1007400.v1.1
prunus_persica	Prupe.1G360300_v2.0.a1
pyrus_communis	pycom08g00680
rosa_chinensis	RchiOBHm_Chr6g0303581
rosa_laevigata	RLG00000011067 RLG00000011071
rosa_multiflora	Rmu_ssc0000114.1_g000026
rosa_roxburghii	Rroxscaffold_7G00164610
rosa_rugosa	Rorug06G0322500
rosa_samantha	Rh6BG465900 Rh6BG466400 Rh6CG448900 Rh6DG436100
rosa_wichuraiana	Rw6G037820 Rw6G037860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	75
AccII	CGCG	1 cut(s)	230
AciI	CCGC	4 cut(s)	99, 142, 198, 230
AfeI	AGCGCT	1 cut(s)	61
AfiI	CCNNNNNNNGG	3 cut(s)	108, 115, 318
AflIII	ACRYGT	1 cut(s)	80
AgeI	ACCGGT	1 cut(s)	133
AjnI	CCWGG	4 cut(s)	212, 237, 277, 317
AluBI	AGCT	2 cut(s)	208, 408
AluI	AGCT	2 cut(s)	208, 408
Alw26I	GTCTC	1 cut(s)	89
Ama87I	CYCGRG	1 cut(s)	267
Aor51HI	AGCGCT	1 cut(s)	61
AoxI	GGCC	1 cut(s)	165
AsiGI	ACCGGT	1 cut(s)	133
AspLEI	GCGC	3 cut(s)	62, 230, 311
AspS9I	GGNCC	1 cut(s)	11
AsuC2I	CCSGG	1 cut(s)	109
AsuNHI	GCTAGC	1 cut(s)	404
AvaI	CYCGRG	1 cut(s)	267
AvaII	GGWCC	1 cut(s)	11
BbvCI	CCTCAGC	1 cut(s)	369
BccI	CCATC	1 cut(s)	306
BceAI	ACGGC	1 cut(s)	307
BcgI	CGANNNNNNTGC	2 cut(s)	248, 282
BciT130I	CCWGG	4 cut(s)	214, 239, 279, 319
BcnI	CCSGG	1 cut(s)	109
BcoDI	GTCTC	1 cut(s)	89
BfaI	CTAG	2 cut(s)	195, 405
BfoI	RGCGCY	1 cut(s)	63
BisI	GCNGC	2 cut(s)	99, 199
BlsI	GCNGC	2 cut(s)	100, 200
Bme1390I	CCNGG	5 cut(s)	109, 214, 239, 279, 319
Bme18I	GGWCC	1 cut(s)	11
BmeT110I	CYCGRG	1 cut(s)	267
BmgT120I	GGNCC	1 cut(s)	11
BmiI	GGNNCC	2 cut(s)	46, 276
BmrFI	CCNGG	5 cut(s)	109, 214, 239, 279, 319
BmsI	GCATC	1 cut(s)	27
BmtI	GCTAGC	1 cut(s)	408
BplI	GAGNNNNNCTC	2 cut(s)	345, 377
BpmI	CTGGAG	1 cut(s)	260
Bpu10I	CCTNAGC	1 cut(s)	369
BpuMI	CCSGG	1 cut(s)	109
BsaJI	CCNNGG	3 cut(s)	125, 213, 289
BsaWI	WCCGGW	2 cut(s)	133, 343
Bsc4I	CCNNNNNNNGG	3 cut(s)	108, 115, 318
Bse118I	RCCGGY	2 cut(s)	133, 262
BseBI	CCWGG	4 cut(s)	214, 239, 279, 319
BseDI	CCNNGG	3 cut(s)	125, 213, 289
BseLI	CCNNNNNNNGG	3 cut(s)	108, 115, 318
BseMII	CTCAG	1 cut(s)	383
BseRI	GAGGAG	1 cut(s)	257
Bsh1236I	CGCG	1 cut(s)	230
Bsh1285I	CGRYCG	1 cut(s)	113
BshFI	GGCC	1 cut(s)	167
BshTI	ACCGGT	1 cut(s)	133
BsiEI	CGRYCG	1 cut(s)	113
BsiHKCI	CYCGRG	1 cut(s)	267
BsiSI	CCGG	4 cut(s)	109, 134, 263, 344
BslFI	GGGAC	1 cut(s)	232
BslI	CCNNNNNNNGG	3 cut(s)	108, 115, 318
BsmAI	GTCTC	1 cut(s)	89
BsmFI	GGGAC	1 cut(s)	232
BsnI	GGCC	1 cut(s)	167
BsoBI	CYCGRG	1 cut(s)	267
Bsp143I	GATC	2 cut(s)	172, 246
BspACI	CCGC	4 cut(s)	99, 142, 198, 230
BspANI	GGCC	1 cut(s)	167
BspCNI	CTCAG	1 cut(s)	382
BspFNI	CGCG	1 cut(s)	230
BspLI	GGNNCC	2 cut(s)	46, 276
BspOI	GCTAGC	1 cut(s)	408
BsrFI	RCCGGY	2 cut(s)	133, 262
BssAI	RCCGGY	2 cut(s)	133, 262
BssECI	CCNNGG	3 cut(s)	125, 213, 289
BssMI	GATC	2 cut(s)	172, 246
Bst2UI	CCWGG	4 cut(s)	214, 239, 279, 319
BstC8I	GCNNGC	1 cut(s)	406
BstDEI	CTNAG	2 cut(s)	327, 369
BstDSI	CCRYGG	1 cut(s)	289
BstEII	GGTNACC	1 cut(s)	129
BstFNI	CGCG	1 cut(s)	230
BstH2I	RGCGCY	1 cut(s)	63
BstHHI	GCGC	3 cut(s)	62, 230, 311
BstKTI	GATC	2 cut(s)	175, 249
BstMAI	GTCTC	1 cut(s)	89
BstMBI	GATC	2 cut(s)	172, 246
BstMCI	CGRYCG	1 cut(s)	113
BstMWI	GCNNNNNNNGC	3 cut(s)	51, 234, 328
BstNI	CCWGG	4 cut(s)	214, 239, 279, 319
BstNSI	RCATGY	1 cut(s)	84
BstPI	GGTNACC	1 cut(s)	129
BstSCI	CCNGG	5 cut(s)	107, 212, 237, 277, 317
BstUI	CGCG	1 cut(s)	230
BsuRI	GGCC	1 cut(s)	167
BtgI	CCRYGG	1 cut(s)	289
Cac8I	GCNNGC	1 cut(s)	406
CfoI	GCGC	3 cut(s)	62, 230, 311
Cfr10I	RCCGGY	2 cut(s)	133, 262
Cfr13I	GGNCC	1 cut(s)	11
CspAI	ACCGGT	1 cut(s)	133
CviAII	CATG	2 cut(s)	55, 81
DdeI	CTNAG	2 cut(s)	327, 369
DpnI	GATC	2 cut(s)	174, 248
DpnII	GATC	2 cut(s)	172, 246
Eco47I	GGWCC	1 cut(s)	11
Eco47III	AGCGCT	1 cut(s)	61
Eco88I	CYCGRG	1 cut(s)	267
Eco91I	GGTNACC	1 cut(s)	129
EcoO65I	GGTNACC	1 cut(s)	129
EcoRII	CCWGG	4 cut(s)	212, 237, 277, 317
FaeI	CATG	2 cut(s)	58, 84
FaiI	YATR	3 cut(s)	56, 82, 91
FaqI	GGGAC	1 cut(s)	232
FatI	CATG	2 cut(s)	54, 80
FauI	CCCGC	1 cut(s)	135
FblI	GTMKAC	1 cut(s)	75
Fnu4HI	GCNGC	2 cut(s)	99, 199
Fsp4HI	GCNGC	2 cut(s)	99, 199
FspBI	CTAG	2 cut(s)	195, 405
GlaI	GCGC	3 cut(s)	61, 229, 310
GluI	GCNGC	2 cut(s)	99, 199
GsuI	CTGGAG	1 cut(s)	260
HaeII	RGCGCY	1 cut(s)	63
HaeIII	GGCC	1 cut(s)	167
HapII	CCGG	4 cut(s)	109, 134, 263, 344
HhaI	GCGC	3 cut(s)	62, 230, 311
Hin1II	CATG	2 cut(s)	58, 84
Hin6I	GCGC	3 cut(s)	60, 228, 309
HinP1I	GCGC	3 cut(s)	60, 228, 309
HpaII	CCGG	4 cut(s)	109, 134, 263, 344
Hpy166II	GTNNAC	1 cut(s)	76
Hpy188I	TCNGA	4 cut(s)	49, 151, 172, 391
Hpy188III	TCNNGA	2 cut(s)	22, 176
Hpy8I	GTNNAC	1 cut(s)	76
Hpy99I	CGWCG	1 cut(s)	118
HpyAV	CCTTC	2 cut(s)	44, 148
HpyF10VI	GCNNNNNNNGC	3 cut(s)	51, 234, 328
HpyF3I	CTNAG	2 cut(s)	327, 369
Hsp92II	CATG	2 cut(s)	58, 84
HspAI	GCGC	3 cut(s)	60, 228, 309
Kzo9I	GATC	2 cut(s)	172, 246
LmnI	GCTCC	1 cut(s)	50
LweI	GCATC	1 cut(s)	27
MaeI	CTAG	2 cut(s)	195, 405
MaeIII	GTNAC	3 cut(s)	22, 129, 284
MalI	GATC	2 cut(s)	174, 248
MboI	GATC	2 cut(s)	172, 246
MmeI	TCCRAC	1 cut(s)	388
MnlI	CCTC	6 cut(s)	135, 178, 235, 244, 378, 397
MspI	CCGG	4 cut(s)	109, 134, 263, 344
MspR9I	CCNGG	5 cut(s)	109, 214, 239, 279, 319
MvaI	CCWGG	4 cut(s)	214, 239, 279, 319
MvnI	CGCG	1 cut(s)	230
MwoI	GCNNNNNNNGC	3 cut(s)	51, 234, 328
NciI	CCSGG	1 cut(s)	109
NdeII	GATC	2 cut(s)	172, 246
NheI	GCTAGC	1 cut(s)	404
NlaIII	CATG	2 cut(s)	58, 84
NlaIV	GGNNCC	2 cut(s)	46, 276
NmuCI	GTSAC	1 cut(s)	22
NspI	RCATGY	1 cut(s)	84
PciI	ACATGT	1 cut(s)	80
PflFI	GACNNNGTC	1 cut(s)	28
PinAI	ACCGGT	1 cut(s)	133
PkrI	GCNGC	2 cut(s)	100, 200
PscI	ACATGT	1 cut(s)	80
Psp6I	CCWGG	4 cut(s)	212, 237, 277, 317
PspEI	GGTNACC	1 cut(s)	129
PspGI	CCWGG	4 cut(s)	212, 237, 277, 317
PspN4I	GGNNCC	2 cut(s)	46, 276
PspPI	GGNCC	1 cut(s)	11
PsyI	GACNNNGTC	1 cut(s)	28
SatI	GCNGC	2 cut(s)	99, 199
Sau3AI	GATC	2 cut(s)	172, 246
Sau96I	GGNCC	1 cut(s)	11
ScrFI	CCNGG	5 cut(s)	109, 214, 239, 279, 319
SetI	ASST	5 cut(s)	210, 283, 320, 370, 410
SfaNI	GCATC	1 cut(s)	27
SinI	GGWCC	1 cut(s)	11
SsiI	CCGC	4 cut(s)	99, 142, 198, 230
SspMI	CTAG	2 cut(s)	195, 405
StyD4I	CCNGG	5 cut(s)	107, 212, 237, 277, 317
TaqI	TCGA	2 cut(s)	177, 249
TauI	GCSGC	2 cut(s)	101, 201
TseFI	GTSAC	1 cut(s)	22
Tsp45I	GTSAC	1 cut(s)	22
TspDTI	ATGAA	1 cut(s)	408
TspGWI	ACGGA	1 cut(s)	236
Tth111I	GACNNNGTC	1 cut(s)	28
VpaK11BI	GGWCC	1 cut(s)	11
XceI	RCATGY	1 cut(s)	84
XmiI	GTMKAC	1 cut(s)	75
XspI	CTAG	2 cut(s)	195, 405

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.