Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0013024

Physical Location & Seq

Genomic Coordinates Reverse (-)

33238155 .. 33238946

Gene Structure 792 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G360300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGCTTGTTTCGGTGTTTATGGCTCTGCTTCTACCAAGCGTGGCCATCAGCGCTGTTTTCGTAGTGTACATCTGCCTGTTATGGTATGCTACGAATAACCAGGAGCAGCCCGAGGTTCGGTTGCCGGTGAAGCAGGTTTCGCAAAAGGGGTTGTCAGCCTCTGAACTGGACAAGTTGCCTAAAATCACAGGGAAAGAGCTGACGACGGAGAGGACGGAGTGCGCGGTGTGTCTTGAAGAGATAGAGGGAGAGCAAGTGGCTCGGCTGGTTCCCGGTTGCAATCACGCTTTCCATCTGCTATGCGCCGACACCTGGCTTTCTAAGCACTCCTTTTGTCCAGTTTGTAGGGCCAAACTCCAACTTCATCAGGATCTTCCTCAGTCCTCTGTCACTTGTTCTGAAAATCCCTGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

138

Amino Acids

15.19

Weight (kDa)

5.76

Isoelectric Point (pI)

53.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013024)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42200
fragaria_vesca	FvH4_2g38021
malus_domestica	MD08G1008600.v1.1 MD15G1007400.v1.1
prunus_persica	Prupe.1G360300_v2.0.a1
pyrus_communis	pycom08g00680
rosa_chinensis	RchiOBHm_Chr6g0303581
rosa_laevigata	RLG00000011067 RLG00000011071
rosa_multiflora	Rmu_ssc0000114.1_g000026
rosa_roxburghii	Rroxscaffold_7G00164610
rosa_rugosa	Rorug06G0322500
rosa_samantha	Rh6BG465900 Rh6BG466400 Rh6CG448900 Rh6DG436100
rosa_wichuraiana	Rw6G037820 Rw6G037860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	124
AccII	CGCG	1 cut(s)	224
AciI	CCGC	1 cut(s)	224
AclWI	GGATC	1 cut(s)	378
AcoI	YGGCCR	1 cut(s)	42
AfaI	GTAC	1 cut(s)	68
AfeI	AGCGCT	1 cut(s)	52
AfiI	CCNNNNNNNGG	2 cut(s)	117, 312
AgsI	TTSAA	1 cut(s)	236
AjnI	CCWGG	2 cut(s)	99, 311
AluBI	AGCT	1 cut(s)	199
AluI	AGCT	1 cut(s)	199
AlwI	GGATC	1 cut(s)	378
AlwNI	CAGNNNCTG	1 cut(s)	161
Ama87I	CYCGRG	1 cut(s)	110
Aor51HI	AGCGCT	1 cut(s)	52
AoxI	GGCC	2 cut(s)	42, 348
ApeKI	GCWGC	1 cut(s)	106
AspLEI	GCGC	3 cut(s)	53, 224, 305
AspS9I	GGNCC	1 cut(s)	348
AsuC2I	CCSGG	1 cut(s)	273
AsuHPI	GGTGA	1 cut(s)	139
AvaI	CYCGRG	1 cut(s)	110
BalI	TGGCCA	1 cut(s)	44
BbvI	GCAGC	1 cut(s)	118
BccI	CCATC	2 cut(s)	53, 300
BcgI	CGANNNNNNTGC	2 cut(s)	242, 276
BciT130I	CCWGG	2 cut(s)	101, 313
BcnI	CCSGG	1 cut(s)	273
BfoI	RGCGCY	1 cut(s)	54
BfuAI	ACCTGC	1 cut(s)	124
BisI	GCNGC	1 cut(s)	107
BlsI	GCNGC	1 cut(s)	108
Bme1390I	CCNGG	3 cut(s)	101, 273, 313
BmeT110I	CYCGRG	1 cut(s)	110
BmgT120I	GGNCC	1 cut(s)	348
BmiI	GGNNCC	1 cut(s)	270
BmrFI	CCNGG	3 cut(s)	101, 273, 313
BpuMI	CCSGG	1 cut(s)	273
BsaJI	CCNNGG	1 cut(s)	111
BsaXI	ACNNNNNCTCC	2 cut(s)	240, 270
Bsc4I	CCNNNNNNNGG	2 cut(s)	117, 312
Bse118I	RCCGGY	1 cut(s)	124
Bse1I	ACTGG	2 cut(s)	171, 338
BseBI	CCWGG	2 cut(s)	101, 313
BseDI	CCNNGG	1 cut(s)	111
BseLI	CCNNNNNNNGG	2 cut(s)	117, 312
BseMII	CTCAG	1 cut(s)	392
BseNI	ACTGG	2 cut(s)	171, 338
BseXI	GCAGC	1 cut(s)	118
Bsh1236I	CGCG	1 cut(s)	224
BshFI	GGCC	2 cut(s)	44, 350
BsiHKCI	CYCGRG	1 cut(s)	110
BsiSI	CCGG	2 cut(s)	125, 273
BslI	CCNNNNNNNGG	2 cut(s)	117, 312
BsnI	GGCC	2 cut(s)	44, 350
BsoBI	CYCGRG	1 cut(s)	110
Bsp1407I	TGTACA	1 cut(s)	66
Bsp143I	GATC	1 cut(s)	370
BspACI	CCGC	1 cut(s)	224
BspANI	GGCC	2 cut(s)	44, 350
BspCNI	CTCAG	1 cut(s)	391
BspFNI	CGCG	1 cut(s)	224
BspLI	GGNNCC	1 cut(s)	270
BspMI	ACCTGC	1 cut(s)	124
BspPI	GGATC	1 cut(s)	378
BsrFI	RCCGGY	1 cut(s)	124
BsrGI	TGTACA	1 cut(s)	66
BsrI	ACTGG	2 cut(s)	171, 338
BssAI	RCCGGY	1 cut(s)	124
BssECI	CCNNGG	1 cut(s)	111
BssMI	GATC	1 cut(s)	370
Bst2UI	CCWGG	2 cut(s)	101, 313
Bst6I	CTCTTC	1 cut(s)	231
BstAUI	TGTACA	1 cut(s)	66
BstDEI	CTNAG	2 cut(s)	321, 378
BstFNI	CGCG	1 cut(s)	224
BstH2I	RGCGCY	1 cut(s)	54
BstHHI	GCGC	3 cut(s)	53, 224, 305
BstKTI	GATC	1 cut(s)	373
BstMBI	GATC	1 cut(s)	370
BstMWI	GCNNNNNNNGC	4 cut(s)	50, 130, 139, 322
BstNI	CCWGG	2 cut(s)	101, 313
BstSCI	CCNGG	3 cut(s)	99, 271, 311
BstUI	CGCG	1 cut(s)	224
BstV1I	GCAGC	1 cut(s)	118
BstX2I	RGATCY	1 cut(s)	370
BstYI	RGATCY	1 cut(s)	370
BsuRI	GGCC	2 cut(s)	44, 350
BveI	ACCTGC	1 cut(s)	124
CaiI	CAGNNNCTG	1 cut(s)	161
CfoI	GCGC	3 cut(s)	53, 224, 305
Cfr10I	RCCGGY	1 cut(s)	124
Cfr13I	GGNCC	1 cut(s)	348
Csp6I	GTAC	1 cut(s)	67
CviJI	RGCY	9 cut(s)	23, 44, 109, 158, 199, 260, 265, 316, 350
CviKI_1	RGCY	9 cut(s)	23, 44, 109, 158, 199, 260, 265, 316, 350
CviQI	GTAC	1 cut(s)	67
DdeI	CTNAG	2 cut(s)	321, 378
DpnI	GATC	1 cut(s)	372
DpnII	GATC	1 cut(s)	370
EaeI	YGGCCR	1 cut(s)	42
Eam1104I	CTCTTC	1 cut(s)	231
EarI	CTCTTC	1 cut(s)	231
Eco47III	AGCGCT	1 cut(s)	52
Eco88I	CYCGRG	1 cut(s)	110
EcoRII	CCWGG	2 cut(s)	99, 311
FaiI	YATR	4 cut(s)	20, 82, 87, 301
FalI	AAGNNNNNCTT	2 cut(s)	314, 346
Fnu4HI	GCNGC	1 cut(s)	107
Fsp4HI	GCNGC	1 cut(s)	107
GlaI	GCGC	3 cut(s)	52, 223, 304
GluI	GCNGC	1 cut(s)	107
HaeII	RGCGCY	1 cut(s)	54
HaeIII	GGCC	2 cut(s)	44, 350
HapII	CCGG	2 cut(s)	125, 273
HhaI	GCGC	3 cut(s)	53, 224, 305
Hin6I	GCGC	3 cut(s)	51, 222, 303
HinP1I	GCGC	3 cut(s)	51, 222, 303
HpaII	CCGG	2 cut(s)	125, 273
HphI	GGTGA	1 cut(s)	139
Hpy166II	GTNNAC	1 cut(s)	67
Hpy188I	TCNGA	2 cut(s)	163, 400
Hpy188III	TCNNGA	2 cut(s)	233, 368
Hpy8I	GTNNAC	1 cut(s)	67
Hpy99I	CGWCG	1 cut(s)	208
HpyCH4V	TGCA	1 cut(s)	279
HpyF10VI	GCNNNNNNNGC	4 cut(s)	50, 130, 139, 322
HpyF3I	CTNAG	2 cut(s)	321, 378
HspAI	GCGC	3 cut(s)	51, 222, 303
Kzo9I	GATC	1 cut(s)	370
LmnI	GCTCC	1 cut(s)	103
Lsp1109I	GCAGC	1 cut(s)	118
MaeIII	GTNAC	1 cut(s)	388
MalI	GATC	1 cut(s)	372
MboI	GATC	1 cut(s)	370
MboII	GAAGA	2 cut(s)	248, 365
MflI	RGATCY	1 cut(s)	370
MlsI	TGGCCA	1 cut(s)	44
MluNI	TGGCCA	1 cut(s)	44
MmeI	TCCRAC	1 cut(s)	382
MnlI	CCTC	6 cut(s)	106, 169, 204, 238, 387, 394
Mox20I	TGGCCA	1 cut(s)	44
MscI	TGGCCA	1 cut(s)	44
Msp20I	TGGCCA	1 cut(s)	44
MspI	CCGG	2 cut(s)	125, 273
MspR9I	CCNGG	3 cut(s)	101, 273, 313
MvaI	CCWGG	2 cut(s)	101, 313
MvnI	CGCG	1 cut(s)	224
MwoI	GCNNNNNNNGC	4 cut(s)	50, 130, 139, 322
NciI	CCSGG	1 cut(s)	273
NdeII	GATC	1 cut(s)	370
NlaIV	GGNNCC	1 cut(s)	270
NmeAIII	GCCGAG	1 cut(s)	241
NmuCI	GTSAC	1 cut(s)	388
PkrI	GCNGC	1 cut(s)	108
Psp6I	CCWGG	2 cut(s)	99, 311
PspGI	CCWGG	2 cut(s)	99, 311
PspN4I	GGNNCC	1 cut(s)	270
PspPI	GGNCC	1 cut(s)	348
PstNI	CAGNNNCTG	1 cut(s)	161
PsuI	RGATCY	1 cut(s)	370
RsaI	GTAC	1 cut(s)	68
RsaNI	GTAC	1 cut(s)	67
SatI	GCNGC	1 cut(s)	107
Sau3AI	GATC	1 cut(s)	370
Sau96I	GGNCC	1 cut(s)	348
ScrFI	CCNGG	3 cut(s)	101, 273, 313
SetI	ASST	4 cut(s)	117, 138, 201, 314
SsiI	CCGC	1 cut(s)	224
StyD4I	CCNGG	3 cut(s)	99, 271, 311
TatI	WGTACW	1 cut(s)	66
TseFI	GTSAC	1 cut(s)	388
TseI	GCWGC	1 cut(s)	106
Tsp45I	GTSAC	1 cut(s)	388
TspDTI	ATGAA	1 cut(s)	353
TspGWI	ACGGA	2 cut(s)	221, 230

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.