Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000114.1

Orthogroup ID

OG0013024

Physical Location & Seq

Genomic Coordinates Reverse (-)

140155 .. 140508

Gene Structure 354 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000114.1_g000026.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

atgagcgctgtgttcgtggtctacatctgtctcttatggttcgccgccaatacccggtcgtcggcagagcctcggttaccggtcaagctggtttccgagaagggcttgtcggcctctgatctcgacaagttgccgaaaactagcagcaaagagctgacctgggggacggagtgcgcggtgtgcctggaggagatcgaggcagagcaaccggctcgggtcgttccaggttgtaaccacggcttccatctccaatgcgccgatacctggctttctaagcagtcattctgtccggtttgcagagccaaactccaacctcagcagtttctcacttcctctgatgaaaatccatgctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

117

Amino Acids

12.92

Weight (kDa)

5.63

Isoelectric Point (pI)

61.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013024)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42200
fragaria_vesca	FvH4_2g38021
malus_domestica	MD08G1008600.v1.1 MD15G1007400.v1.1
prunus_persica	Prupe.1G360300_v2.0.a1
pyrus_communis	pycom08g00680
rosa_chinensis	RchiOBHm_Chr6g0303581
rosa_laevigata	RLG00000011067 RLG00000011071
rosa_multiflora	Rmu_ssc0000114.1_g000026
rosa_roxburghii	Rroxscaffold_7G00164610
rosa_rugosa	Rorug06G0322500
rosa_samantha	Rh6BG465900 Rh6BG466400 Rh6CG448900 Rh6DG436100
rosa_wichuraiana	Rw6G037820 Rw6G037860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	21
AccII	CGCG	1 cut(s)	176
AciI	CCGC	2 cut(s)	45, 176
AfeI	AGCGCT	1 cut(s)	7
AfiI	CCNNNNNNNGG	3 cut(s)	54, 61, 264
AgeI	ACCGGT	1 cut(s)	79
AjnI	CCWGG	4 cut(s)	158, 183, 223, 263
AluBI	AGCT	2 cut(s)	88, 154
AluI	AGCT	2 cut(s)	88, 154
Alw26I	GTCTC	1 cut(s)	35
Ama87I	CYCGRG	1 cut(s)	213
Aor51HI	AGCGCT	1 cut(s)	7
AoxI	GGCC	1 cut(s)	111
ApeKI	GCWGC	1 cut(s)	144
AsiGI	ACCGGT	1 cut(s)	79
AspLEI	GCGC	3 cut(s)	8, 176, 257
AsuC2I	CCSGG	1 cut(s)	55
AvaI	CYCGRG	1 cut(s)	213
BbvCI	CCTCAGC	1 cut(s)	315
BbvI	GCAGC	1 cut(s)	156
BccI	CCATC	1 cut(s)	252
BceAI	ACGGC	1 cut(s)	253
BcgI	CGANNNNNNTGC	2 cut(s)	194, 228
BciT130I	CCWGG	4 cut(s)	160, 185, 225, 265
BcnI	CCSGG	1 cut(s)	55
BcoDI	GTCTC	1 cut(s)	35
BfaI	CTAG	2 cut(s)	141, 352
BfoI	RGCGCY	1 cut(s)	9
BisI	GCNGC	2 cut(s)	45, 145
BlsI	GCNGC	2 cut(s)	46, 146
Bme1390I	CCNGG	5 cut(s)	55, 160, 185, 225, 265
BmeT110I	CYCGRG	1 cut(s)	213
BmrFI	CCNGG	5 cut(s)	55, 160, 185, 225, 265
BplI	GAGNNNNNCTC	2 cut(s)	291, 323
BpmI	CTGGAG	1 cut(s)	206
Bpu10I	CCTNAGC	1 cut(s)	315
BpuMI	CCSGG	1 cut(s)	55
BsaBI	GATNNNNATC	1 cut(s)	342
BsaJI	CCNNGG	3 cut(s)	71, 159, 235
BsaWI	WCCGGW	2 cut(s)	79, 289
Bsc4I	CCNNNNNNNGG	3 cut(s)	54, 61, 264
Bse118I	RCCGGY	2 cut(s)	79, 208
Bse8I	GATNNNNATC	1 cut(s)	342
BseBI	CCWGG	4 cut(s)	160, 185, 225, 265
BseDI	CCNNGG	3 cut(s)	71, 159, 235
BseJI	GATNNNNATC	1 cut(s)	342
BseLI	CCNNNNNNNGG	3 cut(s)	54, 61, 264
BseMII	CTCAG	1 cut(s)	329
BseRI	GAGGAG	1 cut(s)	203
BseXI	GCAGC	1 cut(s)	156
Bsh1236I	CGCG	1 cut(s)	176
Bsh1285I	CGRYCG	1 cut(s)	59
BshFI	GGCC	1 cut(s)	113
BshTI	ACCGGT	1 cut(s)	79
BsiEI	CGRYCG	1 cut(s)	59
BsiHKCI	CYCGRG	1 cut(s)	213
BsiSI	CCGG	4 cut(s)	55, 80, 209, 290
BslFI	GGGAC	1 cut(s)	178
BslI	CCNNNNNNNGG	3 cut(s)	54, 61, 264
BsmAI	GTCTC	1 cut(s)	35
BsmFI	GGGAC	1 cut(s)	178
BsnI	GGCC	1 cut(s)	113
BsoBI	CYCGRG	1 cut(s)	213
Bsp143I	GATC	2 cut(s)	118, 192
BspACI	CCGC	2 cut(s)	45, 176
BspANI	GGCC	1 cut(s)	113
BspCNI	CTCAG	1 cut(s)	328
BspFNI	CGCG	1 cut(s)	176
BsrFI	RCCGGY	2 cut(s)	79, 208
BssAI	RCCGGY	2 cut(s)	79, 208
BssECI	CCNNGG	3 cut(s)	71, 159, 235
BssMI	GATC	2 cut(s)	118, 192
Bst2UI	CCWGG	4 cut(s)	160, 185, 225, 265
BstDEI	CTNAG	2 cut(s)	273, 315
BstDSI	CCRYGG	1 cut(s)	235
BstEII	GGTNACC	1 cut(s)	75
BstFNI	CGCG	1 cut(s)	176
BstH2I	RGCGCY	1 cut(s)	9
BstHHI	GCGC	3 cut(s)	8, 176, 257
BstKTI	GATC	2 cut(s)	121, 195
BstMAI	GTCTC	1 cut(s)	35
BstMBI	GATC	2 cut(s)	118, 192
BstMCI	CGRYCG	1 cut(s)	59
BstMWI	GCNNNNNNNGC	2 cut(s)	180, 274
BstNI	CCWGG	4 cut(s)	160, 185, 225, 265
BstPI	GGTNACC	1 cut(s)	75
BstSCI	CCNGG	5 cut(s)	53, 158, 183, 223, 263
BstUI	CGCG	1 cut(s)	176
BstV1I	GCAGC	1 cut(s)	156
BsuRI	GGCC	1 cut(s)	113
BtgI	CCRYGG	1 cut(s)	235
CfoI	GCGC	3 cut(s)	8, 176, 257
Cfr10I	RCCGGY	2 cut(s)	79, 208
CspAI	ACCGGT	1 cut(s)	79
CviAII	CATG	1 cut(s)	348
CviJI	RGCY	9 cut(s)	70, 88, 105, 113, 154, 212, 240, 268, 302
CviKI_1	RGCY	9 cut(s)	70, 88, 105, 113, 154, 212, 240, 268, 302
DdeI	CTNAG	2 cut(s)	273, 315
DpnI	GATC	2 cut(s)	120, 194
DpnII	GATC	2 cut(s)	118, 192
Eco47III	AGCGCT	1 cut(s)	7
Eco88I	CYCGRG	1 cut(s)	213
Eco91I	GGTNACC	1 cut(s)	75
EcoO65I	GGTNACC	1 cut(s)	75
EcoRII	CCWGG	4 cut(s)	158, 183, 223, 263
FaeI	CATG	1 cut(s)	351
FaiI	YATR	2 cut(s)	37, 349
FaqI	GGGAC	1 cut(s)	178
FatI	CATG	1 cut(s)	347
FblI	GTMKAC	1 cut(s)	21
Fnu4HI	GCNGC	2 cut(s)	45, 145
Fsp4HI	GCNGC	2 cut(s)	45, 145
FspBI	CTAG	2 cut(s)	141, 352
GlaI	GCGC	3 cut(s)	7, 175, 256
GluI	GCNGC	2 cut(s)	45, 145
GsuI	CTGGAG	1 cut(s)	206
HaeII	RGCGCY	1 cut(s)	9
HaeIII	GGCC	1 cut(s)	113
HapII	CCGG	4 cut(s)	55, 80, 209, 290
HhaI	GCGC	3 cut(s)	8, 176, 257
Hin1II	CATG	1 cut(s)	351
Hin6I	GCGC	3 cut(s)	6, 174, 255
HinP1I	GCGC	3 cut(s)	6, 174, 255
HpaII	CCGG	4 cut(s)	55, 80, 209, 290
Hpy166II	GTNNAC	1 cut(s)	22
Hpy188I	TCNGA	3 cut(s)	97, 118, 337
Hpy188III	TCNNGA	1 cut(s)	122
Hpy8I	GTNNAC	1 cut(s)	22
Hpy99I	CGWCG	1 cut(s)	64
HpyAV	CCTTC	1 cut(s)	94
HpyCH4V	TGCA	1 cut(s)	297
HpyF10VI	GCNNNNNNNGC	2 cut(s)	180, 274
HpyF3I	CTNAG	2 cut(s)	273, 315
Hsp92II	CATG	1 cut(s)	351
HspAI	GCGC	3 cut(s)	6, 174, 255
Kzo9I	GATC	2 cut(s)	118, 192
Lsp1109I	GCAGC	1 cut(s)	156
MaeI	CTAG	2 cut(s)	141, 352
MaeIII	GTNAC	2 cut(s)	75, 230
MalI	GATC	2 cut(s)	120, 194
MboI	GATC	2 cut(s)	118, 192
MmeI	TCCRAC	1 cut(s)	334
MnlI	CCTC	6 cut(s)	81, 124, 181, 190, 324, 343
MspI	CCGG	4 cut(s)	55, 80, 209, 290
MspR9I	CCNGG	5 cut(s)	55, 160, 185, 225, 265
MvaI	CCWGG	4 cut(s)	160, 185, 225, 265
MvnI	CGCG	1 cut(s)	176
MwoI	GCNNNNNNNGC	2 cut(s)	180, 274
NciI	CCSGG	1 cut(s)	55
NdeII	GATC	2 cut(s)	118, 192
NlaIII	CATG	1 cut(s)	351
PinAI	ACCGGT	1 cut(s)	79
PkrI	GCNGC	2 cut(s)	46, 146
Psp6I	CCWGG	4 cut(s)	158, 183, 223, 263
PspEI	GGTNACC	1 cut(s)	75
PspGI	CCWGG	4 cut(s)	158, 183, 223, 263
SatI	GCNGC	2 cut(s)	45, 145
Sau3AI	GATC	2 cut(s)	118, 192
ScrFI	CCNGG	5 cut(s)	55, 160, 185, 225, 265
SetI	ASST	6 cut(s)	90, 156, 161, 229, 266, 316
SsiI	CCGC	2 cut(s)	45, 176
SspMI	CTAG	2 cut(s)	141, 352
StyD4I	CCNGG	5 cut(s)	53, 158, 183, 223, 263
TaqI	TCGA	2 cut(s)	123, 195
TauI	GCSGC	1 cut(s)	47
TseI	GCWGC	1 cut(s)	144
TspDTI	ATGAA	1 cut(s)	354
TspGWI	ACGGA	1 cut(s)	182
XmiI	GTMKAC	1 cut(s)	21
XspI	CTAG	2 cut(s)	141, 352

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.