E3 ubiquitin-protein ligase
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G42200 |
| fragaria_vesca | FvH4_2g38021 |
| malus_domestica | MD08G1008600.v1.1 MD15G1007400.v1.1 |
| prunus_persica | Prupe.1G360300_v2.0.a1 |
| pyrus_communis | pycom08g00680 |
| rosa_chinensis | RchiOBHm_Chr6g0303581 |
| rosa_laevigata | RLG00000011067 RLG00000011071 |
| rosa_multiflora | Rmu_ssc0000114.1_g000026 |
| rosa_roxburghii | Rroxscaffold_7G00164610 |
| rosa_rugosa | Rorug06G0322500 |
| rosa_samantha | Rh6BG465900 Rh6BG466400 Rh6CG448900 Rh6DG436100 |
| rosa_wichuraiana | Rw6G037820 Rw6G037860 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 1 cut(s) | 147 |
| AciI | CCGC | 1 cut(s) | 147 |
| AcyI | GRCGYC | 1 cut(s) | 272 |
| AdeI | CACNNNGTG | 1 cut(s) | 174 |
| AfaI | GTAC | 1 cut(s) | 32 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 275 |
| AgsI | TTSAA | 1 cut(s) | 208 |
| AhlI | ACTAGT | 1 cut(s) | 7 |
| AjnI | CCWGG | 2 cut(s) | 186, 274 |
| AluBI | AGCT | 3 cut(s) | 124, 133, 157 |
| AluI | AGCT | 3 cut(s) | 124, 133, 157 |
| Ama87I | CYCGRG | 1 cut(s) | 224 |
| AspLEI | GCGC | 3 cut(s) | 62, 179, 268 |
| AsuC2I | CCSGG | 1 cut(s) | 236 |
| AvaI | CYCGRG | 1 cut(s) | 224 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 23, 55 |
| BccI | CCATC | 2 cut(s) | 188, 263 |
| BciT130I | CCWGG | 2 cut(s) | 188, 276 |
| BciVI | GTATCC | 1 cut(s) | 88 |
| BcnI | CCSGG | 1 cut(s) | 236 |
| BcuI | ACTAGT | 1 cut(s) | 7 |
| BfaI | CTAG | 2 cut(s) | 8, 125 |
| BfmI | CTRYAG | 1 cut(s) | 366 |
| BfuI | GTATCC | 1 cut(s) | 88 |
| Bme1390I | CCNGG | 3 cut(s) | 188, 236, 276 |
| BmeT110I | CYCGRG | 1 cut(s) | 224 |
| BmiI | GGNNCC | 1 cut(s) | 233 |
| BmrFI | CCNGG | 3 cut(s) | 188, 236, 276 |
| BmrI | ACTGGG | 1 cut(s) | 82 |
| BmuI | ACTGGG | 1 cut(s) | 82 |
| BpmI | CTGGAG | 1 cut(s) | 244 |
| BpuMI | CCSGG | 1 cut(s) | 236 |
| BsaHI | GRCGYC | 1 cut(s) | 272 |
| BsaJI | CCNNGG | 1 cut(s) | 246 |
| BsaWI | WCCGGW | 1 cut(s) | 300 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 275 |
| Bse118I | RCCGGY | 1 cut(s) | 219 |
| Bse1I | ACTGG | 3 cut(s) | 88, 261, 331 |
| BseBI | CCWGG | 2 cut(s) | 188, 276 |
| BseDI | CCNNGG | 1 cut(s) | 246 |
| BseGI | GGATG | 1 cut(s) | 196 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 275 |
| BseNI | ACTGG | 3 cut(s) | 88, 261, 331 |
| BsiHKCI | CYCGRG | 1 cut(s) | 224 |
| BsiSI | CCGG | 3 cut(s) | 220, 236, 301 |
| BslFI | GGGAC | 1 cut(s) | 308 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 275 |
| BsmFI | GGGAC | 1 cut(s) | 308 |
| BsoBI | CYCGRG | 1 cut(s) | 224 |
| Bsp19I | CCATGG | 1 cut(s) | 246 |
| BspACI | CCGC | 1 cut(s) | 147 |
| BspLI | GGNNCC | 1 cut(s) | 233 |
| BsrBI | CCGCTC | 1 cut(s) | 147 |
| BsrFI | RCCGGY | 1 cut(s) | 219 |
| BsrI | ACTGG | 3 cut(s) | 88, 261, 331 |
| BssAI | RCCGGY | 1 cut(s) | 219 |
| BssECI | CCNNGG | 1 cut(s) | 246 |
| BssNI | GRCGYC | 1 cut(s) | 272 |
| BssT1I | CCWWGG | 1 cut(s) | 246 |
| Bst2UI | CCWGG | 2 cut(s) | 188, 276 |
| Bst4CI | ACNGT | 2 cut(s) | 57, 174 |
| Bst6I | CTCTTC | 1 cut(s) | 44 |
| BstACI | GRCGYC | 1 cut(s) | 272 |
| BstC8I | GCNNGC | 1 cut(s) | 281 |
| BstDSI | CCRYGG | 1 cut(s) | 246 |
| BstF5I | GGATG | 1 cut(s) | 196 |
| BstHHI | GCGC | 3 cut(s) | 62, 179, 268 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 24, 130, 183, 248, 280 |
| BstNI | CCWGG | 2 cut(s) | 188, 276 |
| BstNSI | RCATGY | 3 cut(s) | 22, 31, 351 |
| BstSCI | CCNGG | 3 cut(s) | 186, 234, 274 |
| BstSFI | CTRYAG | 1 cut(s) | 366 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 187 |
| BsuI | GTATCC | 1 cut(s) | 88 |
| BtgI | CCRYGG | 1 cut(s) | 246 |
| BtsCI | GGATG | 1 cut(s) | 196 |
| BtsIMutI | CAGTG | 2 cut(s) | 179, 268 |
| Cac8I | GCNNGC | 1 cut(s) | 281 |
| CfoI | GCGC | 3 cut(s) | 62, 179, 268 |
| Cfr10I | RCCGGY | 1 cut(s) | 219 |
| CseI | GACGC | 1 cut(s) | 280 |
| Csp6I | GTAC | 1 cut(s) | 31 |
| CviAII | CATG | 5 cut(s) | 19, 28, 247, 348, 378 |
| CviJI | RGCY | 7 cut(s) | 75, 124, 133, 157, 223, 251, 279 |
| CviKI_1 | RGCY | 7 cut(s) | 75, 124, 133, 157, 223, 251, 279 |
| CviQI | GTAC | 1 cut(s) | 31 |
| DraIII | CACNNNGTG | 1 cut(s) | 174 |
| Eam1104I | CTCTTC | 1 cut(s) | 44 |
| EarI | CTCTTC | 1 cut(s) | 44 |
| Eco130I | CCWWGG | 1 cut(s) | 246 |
| Eco88I | CYCGRG | 1 cut(s) | 224 |
| EcoRII | CCWGG | 2 cut(s) | 186, 274 |
| EcoT14I | CCWWGG | 1 cut(s) | 246 |
| ErhI | CCWWGG | 1 cut(s) | 246 |
| FaeI | CATG | 5 cut(s) | 22, 31, 250, 351, 381 |
| FaiI | YATR | 5 cut(s) | 20, 29, 248, 349, 379 |
| FaqI | GGGAC | 1 cut(s) | 308 |
| FatI | CATG | 5 cut(s) | 18, 27, 246, 347, 377 |
| FauI | CCCGC | 1 cut(s) | 140 |
| FokI | GGATG | 1 cut(s) | 203 |
| FspBI | CTAG | 2 cut(s) | 8, 125 |
| GlaI | GCGC | 3 cut(s) | 61, 178, 267 |
| GsuI | CTGGAG | 1 cut(s) | 244 |
| HapII | CCGG | 3 cut(s) | 220, 236, 301 |
| HgaI | GACGC | 1 cut(s) | 280 |
| HhaI | GCGC | 3 cut(s) | 62, 179, 268 |
| Hin1I | GRCGYC | 1 cut(s) | 272 |
| Hin1II | CATG | 5 cut(s) | 22, 31, 250, 351, 381 |
| Hin6I | GCGC | 3 cut(s) | 60, 177, 266 |
| HinP1I | GCGC | 3 cut(s) | 60, 177, 266 |
| HincII | GTYRAC | 1 cut(s) | 84 |
| HindII | GTYRAC | 1 cut(s) | 84 |
| HpaII | CCGG | 3 cut(s) | 220, 236, 301 |
| Hpy166II | GTNNAC | 1 cut(s) | 84 |
| Hpy188I | TCNGA | 1 cut(s) | 94 |
| Hpy8I | GTNNAC | 1 cut(s) | 84 |
| Hpy99I | CGWCG | 1 cut(s) | 274 |
| HpyCH4III | ACNGT | 2 cut(s) | 57, 174 |
| HpyCH4IV | ACGT | 1 cut(s) | 105 |
| HpyCH4V | TGCA | 2 cut(s) | 242, 351 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 24, 130, 183, 248, 280 |
| HpySE526I | ACGT | 1 cut(s) | 105 |
| Hsp92I | GRCGYC | 1 cut(s) | 272 |
| Hsp92II | CATG | 5 cut(s) | 22, 31, 250, 351, 381 |
| HspAI | GCGC | 3 cut(s) | 60, 177, 266 |
| MaeI | CTAG | 2 cut(s) | 8, 125 |
| MaeII | ACGT | 1 cut(s) | 105 |
| MbiI | CCGCTC | 1 cut(s) | 147 |
| MboII | GAAGA | 1 cut(s) | 31 |
| MmeI | TCCRAC | 1 cut(s) | 72 |
| MnlI | CCTC | 2 cut(s) | 47, 59 |
| MspI | CCGG | 3 cut(s) | 220, 236, 301 |
| MspR9I | CCNGG | 3 cut(s) | 188, 236, 276 |
| MvaI | CCWGG | 2 cut(s) | 188, 276 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 24, 130, 183, 248, 280 |
| NciI | CCSGG | 1 cut(s) | 236 |
| NcoI | CCATGG | 1 cut(s) | 246 |
| NlaIII | CATG | 5 cut(s) | 22, 31, 250, 351, 381 |
| NlaIV | GGNNCC | 1 cut(s) | 233 |
| NmeAIII | GCCGAG | 1 cut(s) | 145 |
| NspI | RCATGY | 3 cut(s) | 22, 31, 351 |
| Psp6I | CCWGG | 2 cut(s) | 186, 274 |
| PspGI | CCWGG | 2 cut(s) | 186, 274 |
| PspN4I | GGNNCC | 1 cut(s) | 233 |
| RsaI | GTAC | 1 cut(s) | 32 |
| RsaNI | GTAC | 1 cut(s) | 31 |
| ScrFI | CCNGG | 3 cut(s) | 188, 236, 276 |
| SetI | ASST | 4 cut(s) | 108, 126, 135, 159 |
| SfcI | CTRYAG | 1 cut(s) | 366 |
| SpeI | ACTAGT | 1 cut(s) | 7 |
| SsiI | CCGC | 1 cut(s) | 147 |
| SspMI | CTAG | 2 cut(s) | 8, 125 |
| StyD4I | CCNGG | 3 cut(s) | 186, 234, 274 |
| StyI | CCWWGG | 1 cut(s) | 246 |
| TaaI | ACNGT | 2 cut(s) | 57, 174 |
| TaiI | ACGT | 1 cut(s) | 108 |
| TatI | WGTACW | 1 cut(s) | 30 |
| TscAI | CASTG | 2 cut(s) | 179, 268 |
| TspDTI | ATGAA | 2 cut(s) | 31, 345 |
| TspGWI | ACGGA | 1 cut(s) | 310 |
| TspRI | CASTG | 2 cut(s) | 179, 268 |
| XceI | RCATGY | 3 cut(s) | 22, 31, 351 |
| XspI | CTAG | 2 cut(s) | 8, 125 |