Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0013024

Physical Location & Seq

Genomic Coordinates Forward (+)

67483917 .. 67494478

Gene Structure 10562 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG465900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 294 bp

ATGTTTGGCATGTACTTCCTCTTCATCTGCCTCTCACGGTGCGCTGACACCGATAGCCTATCGTCAGCCCAGTCGGATACCAACAACGGCTTGTCGTCTGCCGAGCTAGAGAAGCTACCGAAAATGAGCGGGAAAGAGCTGACAATGGACACACAGTGCGCCATCTGCCTGGATGAGATTGAAGCAGAACAACCGGCTCGGGTGGTTCCCGGTTGCAAGCATGGCTTCCATCTCCAGTGCGCCAACGCCTGGCTTGCCAAGCAATCAATCTGTCCGGAATATTTAAATCGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

97

Amino Acids

10.72

Weight (kDa)

4.97

Isoelectric Point (pI)

54.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-rbx1	PF12678	50 - 92	6.2e-06	RING-H2 zinc finger domain
zf-RING_2	PF13639	52 - 92	5.1e-12	Ring finger domain
zf-RING_11	PF17123	52 - 80	5.3e-11	RING-like zinc finger
zf-C3HC4_2	PF13923	52 - 92	1.3e-07	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0013024)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42200
fragaria_vesca	FvH4_2g38021
malus_domestica	MD08G1008600.v1.1 MD15G1007400.v1.1
prunus_persica	Prupe.1G360300_v2.0.a1
pyrus_communis	pycom08g00680
rosa_chinensis	RchiOBHm_Chr6g0303581
rosa_laevigata	RLG00000011067 RLG00000011071
rosa_multiflora	Rmu_ssc0000114.1_g000026
rosa_roxburghii	Rroxscaffold_7G00164610
rosa_rugosa	Rorug06G0322500
rosa_samantha	Rh6BG465900 Rh6BG466400 Rh6CG448900 Rh6DG436100
rosa_wichuraiana	Rw6G037820 Rw6G037860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	249
AccBSI	CCGCTC	1 cut(s)	129
AccIII	TCCGGA	1 cut(s)	274
AciI	CCGC	1 cut(s)	129
AdeI	CACNNNGTG	1 cut(s)	156
AfaI	GTAC	1 cut(s)	14
AfiI	CCNNNNNNNGG	1 cut(s)	249
AgsI	TTSAA	1 cut(s)	182
AjnI	CCWGG	2 cut(s)	168, 248
AluBI	AGCT	3 cut(s)	106, 115, 139
AluI	AGCT	3 cut(s)	106, 115, 139
Ama87I	CYCGRG	1 cut(s)	198
Aor13HI	TCCGGA	1 cut(s)	274
AspLEI	GCGC	3 cut(s)	44, 161, 242
AsuC2I	CCSGG	1 cut(s)	210
AvaI	CYCGRG	1 cut(s)	198
BarI	GAAGNNNNNNTAC	1 cut(s)	37
BccI	CCATC	2 cut(s)	170, 237
BceAI	ACGGC	1 cut(s)	103
BciT130I	CCWGG	2 cut(s)	170, 250
BciVI	GTATCC	1 cut(s)	70
BcnI	CCSGG	1 cut(s)	210
BfaI	CTAG	1 cut(s)	107
BfuI	GTATCC	1 cut(s)	70
Bme1390I	CCNGG	3 cut(s)	170, 210, 250
BmeT110I	CYCGRG	1 cut(s)	198
BmiI	GGNNCC	1 cut(s)	207
BmrFI	CCNGG	3 cut(s)	170, 210, 250
BmrI	ACTGGG	1 cut(s)	64
BmuI	ACTGGG	1 cut(s)	64
BpmI	CTGGAG	1 cut(s)	218
BpuMI	CCSGG	1 cut(s)	210
BsaWI	WCCGGW	1 cut(s)	274
Bsc4I	CCNNNNNNNGG	1 cut(s)	249
Bse118I	RCCGGY	1 cut(s)	193
Bse1I	ACTGG	2 cut(s)	70, 235
BseAI	TCCGGA	1 cut(s)	274
BseBI	CCWGG	2 cut(s)	170, 250
BseGI	GGATG	1 cut(s)	178
BseLI	CCNNNNNNNGG	1 cut(s)	249
BseNI	ACTGG	2 cut(s)	70, 235
BsiHKCI	CYCGRG	1 cut(s)	198
BsiSI	CCGG	3 cut(s)	194, 210, 275
BslI	CCNNNNNNNGG	1 cut(s)	249
BsoBI	CYCGRG	1 cut(s)	198
Bsp13I	TCCGGA	1 cut(s)	274
BspACI	CCGC	1 cut(s)	129
BspEI	TCCGGA	1 cut(s)	274
BspLI	GGNNCC	1 cut(s)	207
BsrBI	CCGCTC	1 cut(s)	129
BsrFI	RCCGGY	1 cut(s)	193
BsrI	ACTGG	2 cut(s)	70, 235
BssAI	RCCGGY	1 cut(s)	193
Bst2UI	CCWGG	2 cut(s)	170, 250
Bst4CI	ACNGT	2 cut(s)	39, 156
Bst6I	CTCTTC	1 cut(s)	26
BstC8I	GCNNGC	2 cut(s)	218, 255
BstF5I	GGATG	1 cut(s)	178
BstHHI	GCGC	3 cut(s)	44, 161, 242
BstMWI	GCNNNNNNNGC	5 cut(s)	112, 165, 222, 254, 259
BstNI	CCWGG	2 cut(s)	170, 250
BstNSI	RCATGY	1 cut(s)	13
BstSCI	CCNGG	3 cut(s)	168, 208, 248
BstXI	CCANNNNNNTGG	1 cut(s)	169
BsuI	GTATCC	1 cut(s)	70
BtsCI	GGATG	1 cut(s)	178
BtsIMutI	CAGTG	2 cut(s)	161, 242
Cac8I	GCNNGC	2 cut(s)	218, 255
CfoI	GCGC	3 cut(s)	44, 161, 242
Cfr10I	RCCGGY	1 cut(s)	193
Csp6I	GTAC	1 cut(s)	13
CviAII	CATG	2 cut(s)	10, 221
CviJI	RGCY	9 cut(s)	57, 68, 90, 106, 115, 139, 197, 225, 253
CviKI_1	RGCY	9 cut(s)	57, 68, 90, 106, 115, 139, 197, 225, 253
CviQI	GTAC	1 cut(s)	13
DraI	TTTAAA	1 cut(s)	285
DraIII	CACNNNGTG	1 cut(s)	156
Eam1104I	CTCTTC	1 cut(s)	26
EarI	CTCTTC	1 cut(s)	26
Eco88I	CYCGRG	1 cut(s)	198
EcoRII	CCWGG	2 cut(s)	168, 248
FaeI	CATG	2 cut(s)	13, 224
FaiI	YATR	2 cut(s)	11, 222
FalI	AAGNNNNNCTT	2 cut(s)	209, 241
FatI	CATG	2 cut(s)	9, 220
FauI	CCCGC	1 cut(s)	122
FokI	GGATG	1 cut(s)	185
FspBI	CTAG	1 cut(s)	107
GlaI	GCGC	3 cut(s)	43, 160, 241
GsuI	CTGGAG	1 cut(s)	218
HapII	CCGG	3 cut(s)	194, 210, 275
HhaI	GCGC	3 cut(s)	44, 161, 242
Hin1II	CATG	2 cut(s)	13, 224
Hin6I	GCGC	3 cut(s)	42, 159, 240
HinP1I	GCGC	3 cut(s)	42, 159, 240
HpaII	CCGG	3 cut(s)	194, 210, 275
Hpy188I	TCNGA	1 cut(s)	76
Hpy188III	TCNNGA	1 cut(s)	275
HpyCH4III	ACNGT	2 cut(s)	39, 156
HpyCH4V	TGCA	1 cut(s)	216
HpyF10VI	GCNNNNNNNGC	5 cut(s)	112, 165, 222, 254, 259
Hsp92II	CATG	2 cut(s)	13, 224
HspAI	GCGC	3 cut(s)	42, 159, 240
Kpn2I	TCCGGA	1 cut(s)	274
LpnPI	CCDG	9 cut(s)	83, 155, 182, 207, 223, 235, 248, 262, 288
MaeI	CTAG	1 cut(s)	107
MbiI	CCGCTC	1 cut(s)	129
MboII	GAAGA	1 cut(s)	13
MmeI	TCCRAC	1 cut(s)	54
MnlI	CCTC	2 cut(s)	29, 41
MroI	TCCGGA	1 cut(s)	274
MseI	TTAA	2 cut(s)	284, 292
MspI	CCGG	3 cut(s)	194, 210, 275
MspR9I	CCNGG	3 cut(s)	170, 210, 250
MvaI	CCWGG	2 cut(s)	170, 250
MwoI	GCNNNNNNNGC	5 cut(s)	112, 165, 222, 254, 259
NciI	CCSGG	1 cut(s)	210
NlaIII	CATG	2 cut(s)	13, 224
NlaIV	GGNNCC	1 cut(s)	207
NmeAIII	GCCGAG	1 cut(s)	127
NspI	RCATGY	1 cut(s)	13
PflMI	CCANNNNNTGG	1 cut(s)	249
Psp6I	CCWGG	2 cut(s)	168, 248
PspGI	CCWGG	2 cut(s)	168, 248
PspN4I	GGNNCC	1 cut(s)	207
RsaI	GTAC	1 cut(s)	14
RsaNI	GTAC	1 cut(s)	13
SaqAI	TTAA	2 cut(s)	284, 292
ScrFI	CCNGG	3 cut(s)	170, 210, 250
SetI	ASST	3 cut(s)	108, 117, 141
SmiI	ATTTAAAT	1 cut(s)	285
SsiI	CCGC	1 cut(s)	129
SspI	AATATT	1 cut(s)	281
SspMI	CTAG	1 cut(s)	107
StyD4I	CCNGG	3 cut(s)	168, 208, 248
SwaI	ATTTAAAT	1 cut(s)	285
TaaI	ACNGT	2 cut(s)	39, 156
TatI	WGTACW	1 cut(s)	12
Tru1I	TTAA	2 cut(s)	284, 292
Tru9I	TTAA	2 cut(s)	284, 292
TscAI	CASTG	2 cut(s)	161, 242
TspDTI	ATGAA	1 cut(s)	13
TspRI	CASTG	2 cut(s)	161, 242
Van91I	CCANNNNNTGG	1 cut(s)	249
XceI	RCATGY	1 cut(s)	13
XspI	CTAG	1 cut(s)	107

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.