Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0011061

Physical Location & Seq

Genomic Coordinates Reverse (-)

11059690 .. 11059977

Gene Structure 288 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1120300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 288 bp

ATGTTCACAGGGGTGAGGTTTGTGCTACACGATGTGGAAGAGGAGTTAAAGGAGGAGAGCTTGAGATTTCACATTGAGAAGTTGGCAATTGGGCTGGCTTTGGTGCATGGTGAGATGGAGAAGGGGAACAAGACTATTCGGTTTTTCAAGAACTTGAGAGTGTGTGGGGATTGCCATGCATTTATCAAAGGCTTGTCGAAAGTTTTGAAGGTGGTGTTTTTTATGAGAGATGCAAATAGGTTTCACAAGTTTGAGGACGACTCGTGTTCTTTTGGCGATTATTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF167 DYW_deaminase PPR PPR_2 Pkinase

Protein Analysis

96

Amino Acids

11.16

Weight (kDa)

6.96

Isoelectric Point (pI)

37.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DYW_deaminase	PF14432	5 - 95	1.3e-27	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0011061)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G15130
fragaria_vesca	FvH4_2g36310
malus_domestica	MD08G1120300.v1.1 MD08G1120600.v1.1 MD15G1099700.v1.1
prunus_persica	Prupe.1G454500_v2.0.a1
pyrus_communis	pycom08g10070 pycom08g10090 pycom15g09170
rosa_chinensis	RchiOBHm_Chr6g0305571
rosa_laevigata	RLG00000010876
rosa_multiflora	Rmu_co8434531.1_g000001 Rmu_sc0000841.1_g000001 Rmu_sc0001153.1_g000004 Rmu_sc0033568.1_g000001
rosa_rugosa	Rorug06G0341800
rosa_samantha	Rh6AG453800 Rh6BG447700 Rh6DG454100
rosa_wichuraiana	Rw6G039550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AdeI	CACNNNGTG	1 cut(s)	34
AgsI	TTSAA	2 cut(s)	148, 208
AleI	CACNNNNGTG	1 cut(s)	11
AluBI	AGCT	1 cut(s)	60
AluI	AGCT	1 cut(s)	60
AsuHPI	GGTGA	2 cut(s)	25, 122
BauI	CACGAG	1 cut(s)	262
BccI	CCATC	1 cut(s)	109
BmsI	GCATC	1 cut(s)	220
BplI	GAGNNNNNCTC	2 cut(s)	245, 277
BpuEI	CTTGAG	2 cut(s)	82, 175
BseRI	GAGGAG	2 cut(s)	56, 68
BssSI	CACGAG	1 cut(s)	262
Bst2BI	CACGAG	1 cut(s)	262
Bst6I	CTCTTC	1 cut(s)	33
BstC8I	GCNNGC	1 cut(s)	96
Cac8I	GCNNGC	1 cut(s)	96
CviAII	CATG	2 cut(s)	107, 176
CviJI	RGCY	4 cut(s)	60, 94, 98, 192
CviKI_1	RGCY	4 cut(s)	60, 94, 98, 192
DraIII	CACNNNGTG	1 cut(s)	34
Eam1104I	CTCTTC	1 cut(s)	33
EarI	CTCTTC	1 cut(s)	33
EcoT22I	ATGCAT	1 cut(s)	181
FaeI	CATG	2 cut(s)	110, 179
FaiI	YATR	3 cut(s)	108, 177, 224
FatI	CATG	2 cut(s)	106, 175
Hin1II	CATG	2 cut(s)	110, 179
HinfI	GANTC	1 cut(s)	260
HphI	GGTGA	2 cut(s)	25, 122
Hpy166II	GTNNAC	1 cut(s)	6
Hpy188III	TCNNGA	1 cut(s)	148
Hpy8I	GTNNAC	1 cut(s)	6
HpyAV	CCTTC	2 cut(s)	115, 202
HpyCH4V	TGCA	3 cut(s)	106, 179, 233
Hsp92II	CATG	2 cut(s)	110, 179
LpnPI	CCDG	1 cut(s)	80
LweI	GCATC	1 cut(s)	220
MboII	GAAGA	1 cut(s)	50
MfeI	CAATTG	1 cut(s)	87
MluCI	AATT	1 cut(s)	87
MlyI	GAGTC	1 cut(s)	254
MnlI	CCTC	4 cut(s)	9, 34, 46, 247
Mph1103I	ATGCAT	1 cut(s)	181
MseI	TTAA	1 cut(s)	47
MslI	CAYNNNNRTG	1 cut(s)	11
MunI	CAATTG	1 cut(s)	87
NlaIII	CATG	2 cut(s)	110, 179
NsiI	ATGCAT	1 cut(s)	181
OliI	CACNNNNGTG	1 cut(s)	11
PleI	GAGTC	1 cut(s)	254
PpsI	GAGTC	1 cut(s)	254
RseI	CAYNNNNRTG	1 cut(s)	11
SaqAI	TTAA	1 cut(s)	47
SchI	GAGTC	1 cut(s)	254
SetI	ASST	4 cut(s)	20, 62, 213, 242
SfaNI	GCATC	1 cut(s)	220
SmiMI	CAYNNNNRTG	1 cut(s)	11
SmlI	CTYRAG	2 cut(s)	61, 154
SmoI	CTYRAG	2 cut(s)	61, 154
Sse9I	AATT	1 cut(s)	87
TaqI	TCGA	1 cut(s)	197
TasI	AATT	1 cut(s)	87
Tru1I	TTAA	1 cut(s)	47
Tru9I	TTAA	1 cut(s)	47
Zsp2I	ATGCAT	1 cut(s)	181

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.