pycom15g09170

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
Physical Location & Seq
Reverse (-)
5917294 .. 5918892
1599 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g09170.1

Sequence Viewer

Length: 1599 bp
ATGTATGGCAAATGCGGGAGAATGGGGATTGCCTTTGAGGTGTTTGATAGAATGCCTGAGAGAAATGTTGTTTCGTGGACGGCTGTAATGTGTGGATACTTACAGAATGGTAATGCCAAAGGCTCACTGTCTCTATTTAGTAGAATGGGGTTTTCGGGAATTAAGCCAAATGAGTTCACCTTTTCGATCAATCTTAAGGCGTCTGGGTTTGTGGGCATTGTTGAGAATGGAATGCAGATTCACAATATGTGCACCAAATCTGGTTTTGAATGGGTTACAGTGGTGAGCAATTCTATCCTCGACATGTATGCGAAATGTGGAAGATTTCACGAAGCAGCACGAATGTTCGATGTTATGCCAGTTAAGAATCTTATCAGTTGGAACGCGATGATAGCTGGATTCACACTTGAAGGAAATGGGGAGAGAGCCTTGCTCTTATTTAGGAAAATGAAAGGGCTAGGAGAAGTCCCCGACGAATATACGATTACAACTACGCTGAAAGCTTGCAGTGGTCTTGGAGCAGTCCGGCAAGGAAGCCAAATACATTCCTCCTTAATCACAAGAGGATTCCTGTGCTCAGTTCGGACTACTATTGCTGGTGCTCTTGTCGATCTGTACGTAAAATGCAGGCACTTAACTGAAGCTCAGAGGGTATTCGATCAAATTGAACAGAAGAATTTGGTATCCTGGAGTTCCCTGATTCTTGGTTATGCCCAAGAATGCCATCTACTACAAGCCATGGACTTGTTTAGGCAGCTCAGGGTTAGTATCGATCATCAAGTAGACGGGTTTGTTCTCTCAAGCCTTATGGGCGTCTTTGCTGATTTTGCCCTGGTTGAACAAGGTAGGCAAATGCATGCTTTCACTCTCAAAATCCCATCTGGTTTAGACATATCAGTAACTAATTCGATTCTGGATATGTATCTCAAGTGTGGATTAACAGACGAGGCAGAAAGACTGTTTAATGAAACTCCGGTGAGGAATGTAATTTCTTGGACGATTATGATCACAGGCTACGGAAAGCATGGTCTTGGAAGGAAATCTGTACGTCTGTTCCAACAAATGCAATCGGATGACATAGAACCCGATGGGGTGACTTACTTGGCCGTGCTCTCAGCCTGCAGCCATTCTGGACTAATAGAAGAATGCAAAGATTACTTCTCAAGATTGTGTCTCGACAAACGGATCAAACCAATTGTAGAGCATTATGCTTGCATGGTCGATCTCCTCGGCAGAGCTGGACGCGTAAAAGAAGCCAAGAATCTCATCGACAACATGCCTTTGAAACCGAATGTTGGAATACAGCAAACTCTACTTGGTGCTTGTAGAGTACATGGGGACTTGGAAATAGGGAGAGAAGTAGGCGAGACGCTTCTGAAACTGGACAGCAATAACCCTGTCAGCTATGTGATGCTGTCAAACATCTACGCTGAGGCCGGTTACTGGAAAGAGTGCGAGAGAATAAGAAAACTGTTTAAGATGAAAGGGTTAAAGAAAGAGGCAGGACGCAGTTGGGTGGATCGATCAACAAGGGGGTCTACTTCTTCTACAATGGGGATGAGACACACCCGCTTACGGAAAAGATTCATCAAGTGTTGA

Protein Analysis

533

Amino Acids

59.61

Weight (kDa)

9.05

Isoelectric Point (pI)

35.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 21 - 66 2.4e-10 PPR repeat family
PPR_2 PF13041 123 - 169 4.4e-09 PPR repeat family
PPR PF01535 125 - 154 9.7e-06 PPR repeat
PPR_2 PF13041 327 - 375 9.6e-11 PPR repeat family
PPR PF01535 330 - 359 7.9e-07 PPR repeat
E_motif PF20431 445 - 507 1.6e-18 E motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 783, 1538
AccII CGCG 2 cut(s) 386, 1245
AciI CCGC 2 cut(s) 15, 1570
AclWI GGATC 2 cut(s) 1193, 1527
AcoI YGGCCR 1 cut(s) 1104
AcsI RAATTY 1 cut(s) 676
AcuI CTGAAG 1 cut(s) 660
AcyI GRCGYC 2 cut(s) 200, 813
AfaI GTAC 3 cut(s) 617, 1047, 1332
AfiI CCNNNNNNNGG 3 cut(s) 1295, 1443, 1575
AflII CTTAAG 1 cut(s) 194
AflIII ACRYGT 2 cut(s) 303, 1243
AgsI TTSAA 5 cut(s) 269, 410, 668, 839, 1285
AjnI CCWGG 2 cut(s) 686, 831
AluBI AGCT 6 cut(s) 395, 503, 644, 757, 1238, 1404
AluI AGCT 6 cut(s) 395, 503, 644, 757, 1238, 1404
Alw21I GWGCWC 4 cut(s) 254, 578, 604, 1113
Alw26I GTCTC 4 cut(s) 135, 1178, 1361, 1555
Alw44I GTGCAC 1 cut(s) 250
AlwI GGATC 2 cut(s) 1193, 1527
AoxI GGCC 2 cut(s) 1104, 1434
ApaLI GTGCAC 1 cut(s) 250
ApeKI GCWGC 3 cut(s) 335, 754, 1122
ApoI RAATTY 1 cut(s) 676
Asp700I GAANNNNTTC 1 cut(s) 1583
AsuHPI GGTGA 4 cut(s) 169, 295, 988, 1105
BaeGI GKGCMC 1 cut(s) 254
Bbv12I GWGCWC 4 cut(s) 254, 578, 604, 1113
BbvCI CCTCAGC 1 cut(s) 1431
BbvI GCAGC 3 cut(s) 347, 766, 1134
BccI CCATC 3 cut(s) 732, 886, 1082
BceAI ACGGC 2 cut(s) 96, 1091
BcgI CGANNNNNNTGC 2 cut(s) 290, 324
BciT130I CCWGG 2 cut(s) 688, 833
BciVI GTATCC 2 cut(s) 89, 694
BclI TGATCA 1 cut(s) 1005
BcoDI GTCTC 4 cut(s) 135, 1178, 1361, 1555
BfaI CTAG 1 cut(s) 458
BfmI CTRYAG 1 cut(s) 1120
BfrI CTTAAG 1 cut(s) 194
BfuI GTATCC 2 cut(s) 89, 694
BglI GCCNNNNNGGC 1 cut(s) 810
BisI GCNGC 3 cut(s) 336, 755, 1123
BlsI GCNGC 3 cut(s) 337, 756, 1124
Bme1390I CCNGG 2 cut(s) 688, 833
BmrFI CCNGG 2 cut(s) 688, 833
BmsI GCATC 1 cut(s) 1401
BplI GAGNNNNNCTC 2 cut(s) 417, 449
BpmI CTGGAG 1 cut(s) 709
Bpu10I CCTNAGC 2 cut(s) 758, 1431
BpuEI CTTGAG 3 cut(s) 784, 911, 1147
Bsa29I ATCGAT 2 cut(s) 771, 1522
BsaAI YACGTR 1 cut(s) 619
BsaBI GATNNNNATC 2 cut(s) 921, 1004
BsaHI GRCGYC 2 cut(s) 200, 813
BsaJI CCNNGG 3 cut(s) 738, 831, 1228
BsaWI WCCGGW 1 cut(s) 973
Bsc4I CCNNNNNNNGG 3 cut(s) 1295, 1443, 1575
Bse118I RCCGGY 1 cut(s) 1436
Bse1I ACTGG 3 cut(s) 359, 1386, 1448
Bse8I GATNNNNATC 2 cut(s) 921, 1004
BseBI CCWGG 2 cut(s) 688, 833
BseCI ATCGAT 2 cut(s) 771, 1522
BseDI CCNNGG 3 cut(s) 738, 831, 1228
BseGI GGATG 2 cut(s) 1078, 1563
BseJI GATNNNNATC 2 cut(s) 921, 1004
BseLI CCNNNNNNNGG 3 cut(s) 1295, 1443, 1575
BseMII CTCAG 6 cut(s) 48, 591, 659, 772, 1128, 1422
BseNI ACTGG 3 cut(s) 359, 1386, 1448
BseRI GAGGAG 1 cut(s) 1217
BseSI GKGCMC 1 cut(s) 254
BseXI GCAGC 3 cut(s) 347, 766, 1134
Bsh1236I CGCG 2 cut(s) 386, 1245
BshFI GGCC 2 cut(s) 1106, 1436
BshVI ATCGAT 2 cut(s) 771, 1522
BsiHKAI GWGCWC 4 cut(s) 254, 578, 604, 1113
BsiSI CCGG 3 cut(s) 526, 974, 1437
BslFI GGGAC 2 cut(s) 452, 1352
BslI CCNNNNNNNGG 3 cut(s) 1295, 1443, 1575
BsmAI GTCTC 4 cut(s) 135, 1178, 1361, 1555
BsmBI CGTCTC 1 cut(s) 1361
BsmFI GGGAC 2 cut(s) 452, 1352
BsmI GAATGC 4 cut(s) 57, 237, 725, 1151
BsnI GGCC 2 cut(s) 1106, 1436
Bsp1286I GDGCHC 4 cut(s) 254, 578, 604, 1113
Bsp143I GATC 9 cut(s) 186, 610, 658, 772, 1005, 1185, 1222, 1519, 1523
Bsp19I CCATGG 1 cut(s) 738
BspACI CCGC 2 cut(s) 15, 1570
BspANI GGCC 2 cut(s) 1106, 1436
BspCNI CTCAG 6 cut(s) 49, 590, 658, 771, 1127, 1423
BspDI ATCGAT 2 cut(s) 771, 1522
BspFNI CGCG 2 cut(s) 386, 1245
BspMAI CTGCAG 1 cut(s) 1124
BspPI GGATC 2 cut(s) 1193, 1527
BspTI CTTAAG 1 cut(s) 194
BsrFI RCCGGY 1 cut(s) 1436
BsrI ACTGG 3 cut(s) 359, 1386, 1448
BssAI RCCGGY 1 cut(s) 1436
BssECI CCNNGG 3 cut(s) 738, 831, 1228
BssMI GATC 9 cut(s) 186, 610, 658, 772, 1005, 1185, 1222, 1519, 1523
BssNI GRCGYC 2 cut(s) 200, 813
BssT1I CCWWGG 1 cut(s) 738
Bst2UI CCWGG 2 cut(s) 688, 833
Bst4CI ACNGT 4 cut(s) 129, 280, 960, 1473
BstACI GRCGYC 2 cut(s) 200, 813
BstAFI CTTAAG 1 cut(s) 194
BstBAI YACGTR 1 cut(s) 619
BstC8I GCNNGC 5 cut(s) 505, 629, 858, 1120, 1213
BstDEI CTNAG 6 cut(s) 57, 577, 645, 758, 1114, 1431
BstDSI CCRYGG 1 cut(s) 738
BstF5I GGATG 2 cut(s) 1078, 1563
BstFNI CGCG 2 cut(s) 386, 1245
BstKTI GATC 9 cut(s) 189, 613, 661, 775, 1008, 1188, 1225, 1522, 1526
BstMAI GTCTC 4 cut(s) 135, 1178, 1361, 1555
BstMBI GATC 9 cut(s) 186, 610, 658, 772, 1005, 1185, 1222, 1519, 1523
BstMWI GCNNNNNNNGC 3 cut(s) 392, 810, 827
BstNI CCWGG 2 cut(s) 688, 833
BstNSI RCATGY 3 cut(s) 307, 860, 1279
BstSCI CCNGG 2 cut(s) 686, 831
BstSFI CTRYAG 1 cut(s) 1120
BstSLI GKGCMC 1 cut(s) 254
BstSNI TACGTA 1 cut(s) 619
BstUI CGCG 2 cut(s) 386, 1245
BstV1I GCAGC 3 cut(s) 347, 766, 1134
Bsu15I ATCGAT 2 cut(s) 771, 1522
BsuI GTATCC 2 cut(s) 89, 694
BsuRI GGCC 2 cut(s) 1106, 1436
BsuTUI ATCGAT 2 cut(s) 771, 1522
BtgI CCRYGG 1 cut(s) 738
BtgZI GCGATG 1 cut(s) 401
BtsCI GGATG 2 cut(s) 1078, 1563
BtsI GCAGTG 1 cut(s) 514
BtsIMutI CAGTG 3 cut(s) 125, 285, 514
Cac8I GCNNGC 5 cut(s) 505, 629, 858, 1120, 1213
Cfr10I RCCGGY 1 cut(s) 1436
ClaI ATCGAT 2 cut(s) 771, 1522
CseI GACGC 5 cut(s) 189, 802, 1251, 1378, 1515
Csp6I GTAC 3 cut(s) 616, 1046, 1331
CviAII CATG 7 cut(s) 304, 739, 857, 1025, 1216, 1276, 1334
CviQI GTAC 3 cut(s) 616, 1046, 1331
DdeI CTNAG 6 cut(s) 57, 577, 645, 758, 1114, 1431
DpnI GATC 9 cut(s) 188, 612, 660, 774, 1007, 1187, 1224, 1521, 1525
DpnII GATC 9 cut(s) 186, 610, 658, 772, 1005, 1185, 1222, 1519, 1523
EaeI YGGCCR 1 cut(s) 1104
Eco105I TACGTA 1 cut(s) 619
Eco130I CCWWGG 1 cut(s) 738
Eco57I CTGAAG 1 cut(s) 660
EcoRII CCWGG 2 cut(s) 686, 831
EcoT14I CCWWGG 1 cut(s) 738
EcoT22I ATGCAT 1 cut(s) 858
ErhI CCWWGG 1 cut(s) 738
Esp3I CGTCTC 1 cut(s) 1361
FaeI CATG 7 cut(s) 307, 742, 860, 1028, 1219, 1279, 1337
FaqI GGGAC 2 cut(s) 452, 1352
FatI CATG 7 cut(s) 303, 738, 856, 1024, 1215, 1275, 1333
FauI CCCGC 2 cut(s) 8, 1577
FbaI TGATCA 1 cut(s) 1005
FblI GTMKAC 2 cut(s) 783, 1538
Fnu4HI GCNGC 3 cut(s) 336, 755, 1123
FokI GGATG 2 cut(s) 1085, 1570
Fsp4HI GCNGC 3 cut(s) 336, 755, 1123
FspBI CTAG 1 cut(s) 458
GluI GCNGC 3 cut(s) 336, 755, 1123
GsuI CTGGAG 1 cut(s) 709
HaeIII GGCC 2 cut(s) 1106, 1436
HapII CCGG 3 cut(s) 526, 974, 1437
HgaI GACGC 5 cut(s) 189, 802, 1251, 1378, 1515
Hin1I GRCGYC 2 cut(s) 200, 813
Hin1II CATG 7 cut(s) 307, 742, 860, 1028, 1219, 1279, 1337
HindIII AAGCTT 1 cut(s) 501
HinfI GANTC 8 cut(s) 238, 367, 399, 567, 700, 910, 1261, 1584
HpaII CCGG 3 cut(s) 526, 974, 1437
HphI GGTGA 4 cut(s) 169, 295, 988, 1105
Hpy166II GTNNAC 5 cut(s) 78, 177, 252, 784, 1539
Hpy188I TCNGA 4 cut(s) 585, 648, 1072, 1377
Hpy188III TCNNGA 6 cut(s) 156, 329, 914, 1131, 1164, 1175
Hpy8I GTNNAC 5 cut(s) 78, 177, 252, 784, 1539
Hpy99I CGWCG 1 cut(s) 476
HpyAV CCTTC 2 cut(s) 404, 1029
HpyCH4III ACNGT 4 cut(s) 129, 280, 960, 1473
HpyCH4IV ACGT 2 cut(s) 618, 1048
HpyCH4V TGCA 9 cut(s) 235, 252, 507, 627, 856, 1066, 1122, 1149, 1215
HpyF10VI GCNNNNNNNGC 3 cut(s) 392, 810, 827
HpyF3I CTNAG 6 cut(s) 57, 577, 645, 758, 1114, 1431
HpySE526I ACGT 2 cut(s) 618, 1048
Hsp92I GRCGYC 2 cut(s) 200, 813
Hsp92II CATG 7 cut(s) 307, 742, 860, 1028, 1219, 1279, 1337
Ksp22I TGATCA 1 cut(s) 1005
Kzo9I GATC 9 cut(s) 186, 610, 658, 772, 1005, 1185, 1222, 1519, 1523
LmnI GCTCC 1 cut(s) 518
Lsp1109I GCAGC 3 cut(s) 347, 766, 1134
LweI GCATC 1 cut(s) 1401
MaeI CTAG 1 cut(s) 458
MaeII ACGT 2 cut(s) 618, 1048
MaeIII GTNAC 4 cut(s) 274, 898, 1093, 1439
MalI GATC 9 cut(s) 188, 612, 660, 774, 1007, 1187, 1224, 1521, 1525
MboI GATC 9 cut(s) 186, 610, 658, 772, 1005, 1185, 1222, 1519, 1523
MboII GAAGA 4 cut(s) 333, 685, 1154, 1536
MfeI CAATTG 1 cut(s) 1194
MhlI GDGCHC 4 cut(s) 254, 578, 604, 1113
MluCI AATT 7 cut(s) 159, 289, 663, 676, 904, 987, 1194
MluI ACGCGT 1 cut(s) 1243
MmeI TCCRAC 3 cut(s) 359, 1081, 1276
Mph1103I ATGCAT 1 cut(s) 858
MroXI GAANNNNTTC 1 cut(s) 1583
MseI TTAA 9 cut(s) 162, 195, 363, 554, 635, 938, 963, 1476, 1490
MspCI CTTAAG 1 cut(s) 194
MspI CCGG 3 cut(s) 526, 974, 1437
MspR9I CCNGG 2 cut(s) 688, 833
MunI CAATTG 1 cut(s) 1194
Mva1269I GAATGC 4 cut(s) 57, 237, 725, 1151
MvaI CCWGG 2 cut(s) 688, 833
MvnI CGCG 2 cut(s) 386, 1245
MwoI GCNNNNNNNGC 3 cut(s) 392, 810, 827
NcoI CCATGG 1 cut(s) 738
NdeII GATC 9 cut(s) 186, 610, 658, 772, 1005, 1185, 1222, 1519, 1523
NlaIII CATG 7 cut(s) 307, 742, 860, 1028, 1219, 1279, 1337
NmeAIII GCCGAG 1 cut(s) 1209
NmuCI GTSAC 1 cut(s) 1093
NsiI ATGCAT 1 cut(s) 858
NspI RCATGY 3 cut(s) 307, 860, 1279
PaeI GCATGC 1 cut(s) 860
PciI ACATGT 1 cut(s) 303
PcsI WCGNNNNNNNCGW 1 cut(s) 615
PctI GAATGC 4 cut(s) 57, 237, 725, 1151
PdmI GAANNNNTTC 1 cut(s) 1583
PfeI GAWTC 8 cut(s) 238, 367, 399, 567, 700, 910, 1261, 1584
PfoI TCCNGGA 1 cut(s) 686
PkrI GCNGC 3 cut(s) 337, 756, 1124
Ppu21I YACGTR 1 cut(s) 619
PscI ACATGT 1 cut(s) 303
Psp6I CCWGG 2 cut(s) 686, 831
PspGI CCWGG 2 cut(s) 686, 831
PstI CTGCAG 1 cut(s) 1124
RsaI GTAC 3 cut(s) 617, 1047, 1332
RsaNI GTAC 3 cut(s) 616, 1046, 1331
SaqAI TTAA 9 cut(s) 162, 195, 363, 554, 635, 938, 963, 1476, 1490
SatI GCNGC 3 cut(s) 336, 755, 1123
Sau3AI GATC 9 cut(s) 186, 610, 658, 772, 1005, 1185, 1222, 1519, 1523
ScrFI CCNGG 2 cut(s) 688, 833
SduI GDGCHC 4 cut(s) 254, 578, 604, 1113
SfaNI GCATC 1 cut(s) 1401
SfcI CTRYAG 1 cut(s) 1120
SmlI CTYRAG 4 cut(s) 194, 799, 926, 1162
SmoI CTYRAG 4 cut(s) 194, 799, 926, 1162
SnaBI TACGTA 1 cut(s) 619
SphI GCATGC 1 cut(s) 860
Sse9I AATT 7 cut(s) 159, 289, 663, 676, 904, 987, 1194
SsiI CCGC 2 cut(s) 15, 1570
SspMI CTAG 1 cut(s) 458
StyD4I CCNGG 2 cut(s) 686, 831
StyI CCWWGG 1 cut(s) 738
TaaI ACNGT 4 cut(s) 129, 280, 960, 1473
TaiI ACGT 2 cut(s) 621, 1051
TasI AATT 7 cut(s) 159, 289, 663, 676, 904, 987, 1194
TatI WGTACW 1 cut(s) 1330
TfiI GAWTC 8 cut(s) 238, 367, 399, 567, 700, 910, 1261, 1584
Tru1I TTAA 9 cut(s) 162, 195, 363, 554, 635, 938, 963, 1476, 1490
Tru9I TTAA 9 cut(s) 162, 195, 363, 554, 635, 938, 963, 1476, 1490
TscAI CASTG 3 cut(s) 132, 285, 514
TseFI GTSAC 1 cut(s) 1093
TseI GCWGC 3 cut(s) 335, 754, 1122
Tsp45I GTSAC 1 cut(s) 1093
TspDTI ATGAA 4 cut(s) 464, 981, 1496, 1576
TspGWI ACGGA 3 cut(s) 1032, 1198, 1591
TspRI CASTG 3 cut(s) 132, 285, 514
Vha464I CTTAAG 1 cut(s) 194
VneI GTGCAC 1 cut(s) 250
XapI RAATTY 1 cut(s) 676
XceI RCATGY 3 cut(s) 307, 860, 1279
XmiI GTMKAC 2 cut(s) 783, 1538
XmnI GAANNNNTTC 1 cut(s) 1583
XspI CTAG 1 cut(s) 458
Zsp2I ATGCAT 1 cut(s) 858
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.