Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8434531.1

Orthogroup ID

OG0011061

Physical Location & Seq

Genomic Coordinates Reverse (-)

4 .. 1476

Gene Structure 1473 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8434531.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1473 bp

atgcaagagctgggagaagttccggatgagtatacgattacaagcacactcaaggcttgtagtggcgttggagcaattcgacaaggaagccaaatacattcctccttgatcacaagggggtttctgtgttcagttcggacgattattgcaggtgctctcgttgatatgtatgtgaagtgcaggcacttaactgaagctcagagagtgtttgatcaagttgaacagaagaatctaatatcttggagtgccctgattcttggttatgcccaagaatgcaatttagcacaggccatggagttgtttaggcagctcagagctagtgtatgtcatcaagtagatgggtttgttctgtcgagccttatgggtgtgtttgctgattttgctctagtagaacaaggtaggcaaatgcatgctttcaccactaaaatcccatctggtttagacatatcggtgtttaactcgattctggatatgtatctcaagtgtggtttgacagatgaggcagaaagactttttgatgaaactcagttgagaaatgtaatttcttggacaattatgatcaccgggtttggaaagcatggtctagggaagaaagctgtgcatcttttcaaccaaatgcaatcggaggaaatagaacctgatggagtgacttacttggcagtgctctcagcctgcagccattctggactaattcaagaatgccaagaatacttctcaagattgtgtcatgacaaacggattaagcaaactgtagagcattatgcttgcatggttgatctccttggtcgagctggaagattaaaagaagctaagaatctgatcgacagcatgctgctaaaaccaaatattggaatatggcagacattgcttagtgcttgtagggtacatggagaggtggagatagggagagaagtgggagagatgcttctgagattggatggcgataacccggtcaactatgtgatgctgtcaaacatctacgcagaggccggctactggaaggaatgtgagagaataagaaaactgtttaagaggaaggggttaaagaaagatgcagggcggagttgggtagagattgacaaggaggtcttcttcttctacaatggagataagagtcacccacttacagaaaagattcatcaagtattgaaggaaatggagaacagaataaaatctgagatcggctatgttcatggggtgagatttgcactgcatgacgtagaggaggagtcaaaagaagagagcttgagagttcatagtgaaaaactggcaatcgggttggcattggtatgtggtgagcttgagaaagggaatagaacaattcggatcttcaagaacttgagggtatgtggtgattgccatgccttcattaaaggcttgtcaaaggttttgaaggtggtaattcttgtgagagatgctaacaggtttcacaagtttgaggacggcgtgtgttcttgtggagattattggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF167 DYW_deaminase PPR PPR_2 Pkinase

Protein Analysis

490

Amino Acids

55.47

Weight (kDa)

6.79

Isoelectric Point (pI)

37.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011061)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G15130
fragaria_vesca	FvH4_2g36310
malus_domestica	MD08G1120300.v1.1 MD08G1120600.v1.1 MD15G1099700.v1.1
prunus_persica	Prupe.1G454500_v2.0.a1
pyrus_communis	pycom08g10070 pycom08g10090 pycom15g09170
rosa_chinensis	RchiOBHm_Chr6g0305571
rosa_laevigata	RLG00000010876
rosa_multiflora	Rmu_co8434531.1_g000001 Rmu_sc0000841.1_g000001 Rmu_sc0001153.1_g000004 Rmu_sc0033568.1_g000001
rosa_rugosa	Rorug06G0341800
rosa_samantha	Rh6AG453800 Rh6BG447700 Rh6DG454100
rosa_wichuraiana	Rw6G039550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	140
AasI	GACNNNNNNGTC	1 cut(s)	1085
Acc36I	ACCTGC	1 cut(s)	140
AccB7I	CCANNNNNTGG	1 cut(s)	848
AccI	GTMKAC	1 cut(s)	32
AccIII	TCCGGA	1 cut(s)	22
AciI	CCGC	1 cut(s)	1060
AclWI	GGATC	1 cut(s)	1334
AcuI	CTGAAG	1 cut(s)	213
AfaI	GTAC	1 cut(s)	885
AfiI	CCNNNNNNNGG	2 cut(s)	848, 996
AgsI	TTSAA	6 cut(s)	221, 610, 695, 1150, 1333, 1393
AluBI	AGCT	9 cut(s)	10, 197, 310, 317, 596, 791, 809, 1245, 1300
AluI	AGCT	9 cut(s)	10, 197, 310, 317, 596, 791, 809, 1245, 1300
Alw21I	GWGCWC	2 cut(s)	157, 666
AlwI	GGATC	1 cut(s)	1334
Aor13HI	TCCGGA	1 cut(s)	22
AoxI	GGCC	2 cut(s)	288, 987
ApeKI	GCWGC	3 cut(s)	307, 675, 832
Asp700I	GAANNNNTTC	1 cut(s)	1134
AsuC2I	CCSGG	2 cut(s)	565, 950
AsuHPI	GGTGA	6 cut(s)	409, 553, 1109, 1210, 1307, 1364
BaeGI	GKGCMC	1 cut(s)	250
BbsI	GAAGAC	1 cut(s)	1081
Bbv12I	GWGCWC	2 cut(s)	157, 666
BbvI	GCAGC	3 cut(s)	319, 687, 819
BccI	CCATC	4 cut(s)	332, 439, 635, 932
BceAI	ACGGC	1 cut(s)	1459
BclI	TGATCA	3 cut(s)	108, 211, 558
BcnI	CCSGG	2 cut(s)	565, 950
BfaI	CTAG	3 cut(s)	318, 386, 584
BfmI	CTRYAG	2 cut(s)	673, 750
BfuAI	ACCTGC	1 cut(s)	140
BisI	GCNGC	3 cut(s)	308, 676, 833
BlsI	GCNGC	3 cut(s)	309, 677, 834
Bme1390I	CCNGG	2 cut(s)	565, 950
BmrFI	CCNGG	2 cut(s)	565, 950
BmsI	GCATC	5 cut(s)	610, 912, 954, 1042, 1405
BpiI	GAAGAC	1 cut(s)	1081
BpuEI	CTTGAG	6 cut(s)	35, 464, 700, 1267, 1322, 1360
BpuMI	CCSGG	2 cut(s)	565, 950
BsaBI	GATNNNNATC	1 cut(s)	474
BsaJI	CCNNGG	2 cut(s)	291, 781
BsaWI	WCCGGW	1 cut(s)	22
Bsc4I	CCNNNNNNNGG	2 cut(s)	848, 996
Bse118I	RCCGGY	1 cut(s)	989
Bse1I	ACTGG	2 cut(s)	1001, 1272
Bse3DI	GCAATG	1 cut(s)	863
Bse8I	GATNNNNATC	1 cut(s)	474
BseAI	TCCGGA	1 cut(s)	22
BseDI	CCNNGG	2 cut(s)	291, 781
BseGI	GGATG	2 cut(s)	31, 943
BseJI	GATNNNNATC	1 cut(s)	474
BseLI	CCNNNNNNNGG	2 cut(s)	848, 996
BseMI	GCAATG	1 cut(s)	863
BseMII	CTCAG	6 cut(s)	212, 325, 539, 681, 920, 1167
BseNI	ACTGG	2 cut(s)	1001, 1272
BseRI	GAGGAG	2 cut(s)	1238, 1241
BseSI	GKGCMC	1 cut(s)	250
BseXI	GCAGC	3 cut(s)	319, 687, 819
BseYI	CCCAGC	1 cut(s)	10
BsgI	GTGCAG	1 cut(s)	199
BshFI	GGCC	2 cut(s)	290, 989
BsiHKAI	GWGCWC	2 cut(s)	157, 666
BsiSI	CCGG	4 cut(s)	23, 564, 950, 990
BslI	CCNNNNNNNGG	2 cut(s)	848, 996
BsmI	GAATGC	2 cut(s)	278, 704
BsnI	GGCC	2 cut(s)	290, 989
Bsp1286I	GDGCHC	3 cut(s)	157, 250, 666
Bsp13I	TCCGGA	1 cut(s)	22
Bsp143I	GATC	7 cut(s)	108, 211, 558, 775, 819, 1179, 1326
Bsp19I	CCATGG	1 cut(s)	291
BspACI	CCGC	1 cut(s)	1060
BspANI	GGCC	2 cut(s)	290, 989
BspCNI	CTCAG	6 cut(s)	211, 324, 538, 680, 921, 1168
BspEI	TCCGGA	1 cut(s)	22
BspHI	TCATGA	1 cut(s)	727
BspMAI	CTGCAG	1 cut(s)	677
BspMI	ACCTGC	1 cut(s)	140
BspPI	GGATC	1 cut(s)	1334
BsrDI	GCAATG	1 cut(s)	863
BsrFI	RCCGGY	1 cut(s)	989
BsrI	ACTGG	2 cut(s)	1001, 1272
BssAI	RCCGGY	1 cut(s)	989
BssECI	CCNNGG	2 cut(s)	291, 781
BssMI	GATC	7 cut(s)	108, 211, 558, 775, 819, 1179, 1326
BssNAI	GTATAC	1 cut(s)	33
BssT1I	CCWWGG	2 cut(s)	291, 781
Bst1107I	GTATAC	1 cut(s)	33
Bst4CI	ACNGT	2 cut(s)	751, 1026
Bst6I	CTCTTC	1 cut(s)	1233
BstAPI	GCANNNNNTGC	1 cut(s)	865
BstC8I	GCNNGC	6 cut(s)	182, 411, 673, 766, 830, 991
BstDEI	CTNAG	8 cut(s)	198, 311, 525, 667, 810, 869, 929, 1176
BstDSI	CCRYGG	1 cut(s)	291
BstF5I	GGATG	2 cut(s)	31, 943
BstKTI	GATC	7 cut(s)	111, 214, 561, 778, 822, 1182, 1329
BstMBI	GATC	7 cut(s)	108, 211, 558, 775, 819, 1179, 1326
BstMWI	GCNNNNNNNGC	2 cut(s)	380, 865
BstNSI	RCATGY	2 cut(s)	413, 832
BstSCI	CCNGG	2 cut(s)	563, 948
BstSFI	CTRYAG	2 cut(s)	673, 750
BstSLI	GKGCMC	1 cut(s)	250
BstV1I	GCAGC	3 cut(s)	319, 687, 819
BstV2I	GAAGAC	1 cut(s)	1081
BstX2I	RGATCY	1 cut(s)	1326
BstYI	RGATCY	1 cut(s)	1326
BstZ17I	GTATAC	1 cut(s)	33
BsuRI	GGCC	2 cut(s)	290, 989
BtgI	CCRYGG	1 cut(s)	291
BtsCI	GGATG	2 cut(s)	31, 943
BtsI	GCAGTG	2 cut(s)	666, 1208
BtsIMutI	CAGTG	2 cut(s)	666, 1208
BveI	ACCTGC	1 cut(s)	140
Cac8I	GCNNGC	6 cut(s)	182, 411, 673, 766, 830, 991
CciI	TCATGA	1 cut(s)	727
Cfr10I	RCCGGY	1 cut(s)	989
Csp6I	GTAC	1 cut(s)	884
CviQI	GTAC	1 cut(s)	884
DdeI	CTNAG	8 cut(s)	198, 311, 525, 667, 810, 869, 929, 1176
DpnI	GATC	7 cut(s)	110, 213, 560, 777, 821, 1181, 1328
DpnII	GATC	7 cut(s)	108, 211, 558, 775, 819, 1179, 1326
DrdI	GACNNNNNNGTC	1 cut(s)	1085
DseDI	GACNNNNNNGTC	1 cut(s)	1085
Eam1104I	CTCTTC	1 cut(s)	1233
EarI	CTCTTC	1 cut(s)	1233
EciI	GGCGGA	1 cut(s)	1075
Eco130I	CCWWGG	2 cut(s)	291, 781
Eco57I	CTGAAG	1 cut(s)	213
EcoT14I	CCWWGG	2 cut(s)	291, 781
EcoT22I	ATGCAT	1 cut(s)	411
ErhI	CCWWGG	2 cut(s)	291, 781
FalI	AAGNNNNNCTT	2 cut(s)	1073, 1105
FbaI	TGATCA	3 cut(s)	108, 211, 558
FblI	GTMKAC	1 cut(s)	32
Fnu4HI	GCNGC	3 cut(s)	308, 676, 833
FokI	GGATG	2 cut(s)	38, 950
Fsp4HI	GCNGC	3 cut(s)	308, 676, 833
FspBI	CTAG	3 cut(s)	318, 386, 584
GluI	GCNGC	3 cut(s)	308, 676, 833
GsaI	CCCAGC	1 cut(s)	14
HaeIII	GGCC	2 cut(s)	290, 989
HapII	CCGG	4 cut(s)	23, 564, 950, 990
HincII	GTYRAC	1 cut(s)	955
HindII	GTYRAC	1 cut(s)	955
HinfI	GANTC	7 cut(s)	229, 253, 463, 814, 1114, 1135, 1229
HpaII	CCGG	4 cut(s)	23, 564, 950, 990
HphI	GGTGA	6 cut(s)	409, 553, 1109, 1210, 1307, 1364
Hpy166II	GTNNAC	2 cut(s)	33, 955
Hpy188I	TCNGA	8 cut(s)	138, 201, 314, 625, 819, 930, 1177, 1326
Hpy188III	TCNNGA	7 cut(s)	23, 467, 684, 695, 717, 728, 1333
Hpy8I	GTNNAC	2 cut(s)	33, 955
HpyAV	CCTTC	5 cut(s)	994, 1030, 1144, 1375, 1387
HpyCH4III	ACNGT	2 cut(s)	751, 1026
HpyCH4IV	ACGT	1 cut(s)	1218
HpyF10VI	GCNNNNNNNGC	2 cut(s)	380, 865
HpyF3I	CTNAG	8 cut(s)	198, 311, 525, 667, 810, 869, 929, 1176
HpySE526I	ACGT	1 cut(s)	1218
Kpn2I	TCCGGA	1 cut(s)	22
KroI	GCCGGC	1 cut(s)	989
KroNI	GCCGGC	1 cut(s)	991
Ksp22I	TGATCA	3 cut(s)	108, 211, 558
Kzo9I	GATC	7 cut(s)	108, 211, 558, 775, 819, 1179, 1326
LmnI	GCTCC	1 cut(s)	71
Lsp1109I	GCAGC	3 cut(s)	319, 687, 819
LweI	GCATC	5 cut(s)	610, 912, 954, 1042, 1405
MaeI	CTAG	3 cut(s)	318, 386, 584
MaeII	ACGT	1 cut(s)	1218
MaeIII	GTNAC	2 cut(s)	646, 1115
MalI	GATC	7 cut(s)	110, 213, 560, 777, 821, 1181, 1328
MboI	GATC	7 cut(s)	108, 211, 558, 775, 819, 1179, 1326
MboII	GAAGA	8 cut(s)	238, 601, 807, 1081, 1084, 1087, 1250, 1321
MflI	RGATCY	1 cut(s)	1326
MhlI	GDGCHC	3 cut(s)	157, 250, 666
MluCI	AATT	7 cut(s)	75, 277, 540, 552, 690, 1320, 1401
MlyI	GAGTC	2 cut(s)	1123, 1238
MmeI	TCCRAC	1 cut(s)	49
Mph1103I	ATGCAT	1 cut(s)	411
MroI	TCCGGA	1 cut(s)	22
MroNI	GCCGGC	1 cut(s)	989
MroXI	GAANNNNTTC	1 cut(s)	1134
MseI	TTAA	7 cut(s)	188, 456, 741, 800, 1029, 1043, 1371
MslI	CAYNNNNRTG	2 cut(s)	449, 1288
MspI	CCGG	4 cut(s)	23, 564, 950, 990
MspR9I	CCNGG	2 cut(s)	565, 950
Mva1269I	GAATGC	2 cut(s)	278, 704
MwoI	GCNNNNNNNGC	2 cut(s)	380, 865
NaeI	GCCGGC	1 cut(s)	991
NciI	CCSGG	2 cut(s)	565, 950
NcoI	CCATGG	1 cut(s)	291
NdeII	GATC	7 cut(s)	108, 211, 558, 775, 819, 1179, 1326
NgoMIV	GCCGGC	1 cut(s)	989
NmuCI	GTSAC	2 cut(s)	646, 1115
NsiI	ATGCAT	1 cut(s)	411
NspI	RCATGY	2 cut(s)	413, 832
PaeI	GCATGC	2 cut(s)	413, 832
PagI	TCATGA	1 cut(s)	727
PaqCI	CACCTGC	1 cut(s)	140
PctI	GAATGC	2 cut(s)	278, 704
PdiI	GCCGGC	1 cut(s)	991
PdmI	GAANNNNTTC	1 cut(s)	1134
PfeI	GAWTC	5 cut(s)	229, 253, 463, 814, 1135
PflMI	CCANNNNNTGG	1 cut(s)	848
PkrI	GCNGC	3 cut(s)	309, 677, 834
PleI	GAGTC	2 cut(s)	1122, 1237
PpsI	GAGTC	2 cut(s)	1122, 1237
PspFI	CCCAGC	1 cut(s)	10
PstI	CTGCAG	1 cut(s)	677
PsuI	RGATCY	1 cut(s)	1326
RsaI	GTAC	1 cut(s)	885
RsaNI	GTAC	1 cut(s)	884
RseI	CAYNNNNRTG	2 cut(s)	449, 1288
SaqAI	TTAA	7 cut(s)	188, 456, 741, 800, 1029, 1043, 1371
SatI	GCNGC	3 cut(s)	308, 676, 833
Sau3AI	GATC	7 cut(s)	108, 211, 558, 775, 819, 1179, 1326
SchI	GAGTC	2 cut(s)	1123, 1238
ScrFI	CCNGG	2 cut(s)	565, 950
SduI	GDGCHC	3 cut(s)	157, 250, 666
SfaNI	GCATC	5 cut(s)	610, 912, 954, 1042, 1405
SfcI	CTRYAG	2 cut(s)	673, 750
SmiMI	CAYNNNNRTG	2 cut(s)	449, 1288
SmlI	CTYRAG	6 cut(s)	50, 479, 715, 1246, 1301, 1339
SmoI	CTYRAG	6 cut(s)	50, 479, 715, 1246, 1301, 1339
SphI	GCATGC	2 cut(s)	413, 832
Sse9I	AATT	7 cut(s)	75, 277, 540, 552, 690, 1320, 1401
SsiI	CCGC	1 cut(s)	1060
SspI	AATATT	1 cut(s)	847
SspMI	CTAG	3 cut(s)	318, 386, 584
StyD4I	CCNGG	2 cut(s)	563, 948
StyI	CCWWGG	2 cut(s)	291, 781
TaaI	ACNGT	2 cut(s)	751, 1026
TaiI	ACGT	1 cut(s)	1221
TaqI	TCGA	5 cut(s)	79, 353, 461, 787, 822
TasI	AATT	7 cut(s)	75, 277, 540, 552, 690, 1320, 1401
TfiI	GAWTC	5 cut(s)	229, 253, 463, 814, 1135
Tru1I	TTAA	7 cut(s)	188, 456, 741, 800, 1029, 1043, 1371
Tru9I	TTAA	7 cut(s)	188, 456, 741, 800, 1029, 1043, 1371
TscAI	CASTG	2 cut(s)	666, 1215
TseFI	GTSAC	2 cut(s)	646, 1115
TseI	GCWGC	3 cut(s)	307, 675, 832
Tsp45I	GTSAC	2 cut(s)	646, 1115
TspDTI	ATGAA	5 cut(s)	534, 1127, 1181, 1244, 1357
TspGWI	ACGGA	1 cut(s)	751
TspRI	CASTG	2 cut(s)	666, 1215
Van91I	CCANNNNNTGG	1 cut(s)	848
XceI	RCATGY	2 cut(s)	413, 832
XmiI	GTMKAC	1 cut(s)	32
XmnI	GAANNNNTTC	1 cut(s)	1134
XspI	CTAG	3 cut(s)	318, 386, 584
Zsp2I	ATGCAT	1 cut(s)	411

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.