Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0011061

Physical Location & Seq

Genomic Coordinates Reverse (-)

11070161 .. 11074533

Gene Structure 4373 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1120600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 801 bp

ATGCTATCGGATGACATTGAACCCAATAGAGTGACTTACATAGCCGCGCTCTCAGCCTCTAGCCATTCTCGACTAGTTGAAGAATGCCAAGAATGCTTCTCAAGATTGTGCTGCAACAACCGGATTAAACATAATGTAGAGCATTATGCTTGCATGGTTGATCTCCTTGGAAGAGCCATACACGTAAAAGAATTTAAGAATCTCATCGACCCCATGCCTTTAAAACCAAACGTTGGAATACATCAAACTTTGCTTAGTGCTTGTAAAGTACATGGGGACTTGGAAATACGTAAAAAAGTAGGATATACACTTCTGAGAATGAACAACAATAACCCTGTCAATTATGAGATGCTGTCAAACATCTACGCTGAGGCCGGGTACTGGAAAGTGTGCAAGAGAATAAGAAAACTGTTTAAGATGAAAGGGTTAAGGAAAGAGGCTGAACACGGTTATGTGGAGATAGATAAGGAGGTATACTTCTTCTACAACGGAGATAAGACGTATCCTCTTACAGAAAAGATTCATCAAGTATTGAAGGAGATGGAGAAAAGAATAAAATCGGAGCTGGGTTCTGTTCACGGGGTGAGGTTTGCGCTGCACGATGTGGAAGAGGAGTCAAAGGAAGAGAGCTTGAGATTTCACAGTGAGAAGTTGGCAATTAAACTGGTGTTGGTGGTGTTTCTGGTGAAAGATGCAAATAGGTTTCACAAGTTTGAGGACGGCTTATGTTCTTGTGGAGATTATTGTGTTGCCACGTGTCTAGGAACGTTGTTGCAGCTGATAAAAGACCTAGAAATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF167 DYW_deaminase PPR PPR_2 Pkinase

Protein Analysis

267

Amino Acids

30.76

Weight (kDa)

7.96

Isoelectric Point (pI)

40.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
E_motif	PF20431	91 - 146	3.7e-11	E motif
DYW_deaminase	PF14432	227 - 248	5.5e-06	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011061)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G15130
fragaria_vesca	FvH4_2g36310
malus_domestica	MD08G1120300.v1.1 MD08G1120600.v1.1 MD15G1099700.v1.1
prunus_persica	Prupe.1G454500_v2.0.a1
pyrus_communis	pycom08g10070 pycom08g10090 pycom15g09170
rosa_chinensis	RchiOBHm_Chr6g0305571
rosa_laevigata	RLG00000010876
rosa_multiflora	Rmu_co8434531.1_g000001 Rmu_sc0000841.1_g000001 Rmu_sc0001153.1_g000004 Rmu_sc0033568.1_g000001
rosa_rugosa	Rorug06G0341800
rosa_samantha	Rh6AG453800 Rh6BG447700 Rh6DG454100
rosa_wichuraiana	Rw6G039550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	233
AccI	GTMKAC	1 cut(s)	474
AccII	CGCG	1 cut(s)	47
AciI	CCGC	1 cut(s)	45
AclI	AACGTT	2 cut(s)	231, 767
AcsI	RAATTY	1 cut(s)	191
AcvI	CACGTG	1 cut(s)	756
AdeI	CACNNNGTG	2 cut(s)	583, 604
AfaI	GTAC	2 cut(s)	270, 380
AfiI	CCNNNNNNNGG	2 cut(s)	233, 381
AflIII	ACRYGT	2 cut(s)	181, 755
AgsI	TTSAA	3 cut(s)	20, 80, 535
AhlI	ACTAGT	1 cut(s)	73
AluBI	AGCT	3 cut(s)	565, 630, 778
AluI	AGCT	3 cut(s)	565, 630, 778
AoxI	GGCC	1 cut(s)	372
ApeKI	GCWGC	3 cut(s)	111, 595, 775
ApoI	RAATTY	1 cut(s)	191
Asp700I	GAANNNNTTC	1 cut(s)	519
AspLEI	GCGC	2 cut(s)	49, 595
AsuC2I	CCSGG	1 cut(s)	376
AsuHPI	GGTGA	2 cut(s)	595, 697
BbrPI	CACGTG	1 cut(s)	756
BbvCI	CCTCAGC	1 cut(s)	369
BbvI	GCAGC	3 cut(s)	98, 582, 787
BccI	CCATC	1 cut(s)	535
BceAI	ACGGC	1 cut(s)	736
BciVI	GTATCC	1 cut(s)	513
BcnI	CCSGG	1 cut(s)	376
BcuI	ACTAGT	1 cut(s)	73
BfaI	CTAG	4 cut(s)	60, 74, 761, 791
BfuI	GTATCC	1 cut(s)	513
BisI	GCNGC	4 cut(s)	45, 112, 596, 776
BlsI	GCNGC	4 cut(s)	46, 113, 597, 777
Bme1390I	CCNGG	1 cut(s)	376
BmrFI	CCNGG	1 cut(s)	376
BmsI	GCATC	2 cut(s)	339, 682
Bpu10I	CCTNAGC	1 cut(s)	369
BpuEI	CTTGAG	2 cut(s)	85, 652
BpuMI	CCSGG	1 cut(s)	376
BsaAI	YACGTR	3 cut(s)	184, 290, 756
BsaJI	CCNNGG	1 cut(s)	166
BsaWI	WCCGGW	1 cut(s)	120
Bsc4I	CCNNNNNNNGG	2 cut(s)	233, 381
Bse1I	ACTGG	2 cut(s)	386, 669
BseDI	CCNNGG	1 cut(s)	166
BseGI	GGATG	1 cut(s)	16
BseLI	CCNNNNNNNGG	2 cut(s)	233, 381
BseMII	CTCAG	3 cut(s)	66, 305, 360
BseNI	ACTGG	2 cut(s)	386, 669
BseRI	GAGGAG	1 cut(s)	626
BseXI	GCAGC	3 cut(s)	98, 582, 787
BseYI	CCCAGC	1 cut(s)	565
BsgI	GTGCAG	1 cut(s)	581
Bsh1236I	CGCG	1 cut(s)	47
BshFI	GGCC	1 cut(s)	374
BsiSI	CCGG	2 cut(s)	121, 375
BslFI	GGGAC	1 cut(s)	290
BslI	CCNNNNNNNGG	2 cut(s)	233, 381
BsmFI	GGGAC	1 cut(s)	290
BsmI	GAATGC	2 cut(s)	89, 98
BsnI	GGCC	1 cut(s)	374
Bsp143I	GATC	1 cut(s)	160
BspACI	CCGC	1 cut(s)	45
BspANI	GGCC	1 cut(s)	374
BspCNI	CTCAG	3 cut(s)	65, 306, 361
BspFNI	CGCG	1 cut(s)	47
BspQI	GCTCTTC	1 cut(s)	166
BsrI	ACTGG	2 cut(s)	386, 669
BssECI	CCNNGG	1 cut(s)	166
BssMI	GATC	1 cut(s)	160
BssNAI	GTATAC	1 cut(s)	475
BssT1I	CCWWGG	1 cut(s)	166
Bst1107I	GTATAC	1 cut(s)	475
Bst4CI	ACNGT	3 cut(s)	411, 449, 644
Bst6I	CTCTTC	3 cut(s)	166, 603, 618
BstBAI	YACGTR	3 cut(s)	184, 290, 756
BstC8I	GCNNGC	1 cut(s)	151
BstDEI	CTNAG	4 cut(s)	52, 254, 314, 369
BstF5I	GGATG	1 cut(s)	16
BstFNI	CGCG	1 cut(s)	47
BstHHI	GCGC	2 cut(s)	49, 595
BstKTI	GATC	1 cut(s)	163
BstMBI	GATC	1 cut(s)	160
BstMWI	GCNNNNNNNGC	2 cut(s)	53, 93
BstSCI	CCNGG	1 cut(s)	374
BstSNI	TACGTA	1 cut(s)	290
BstUI	CGCG	1 cut(s)	47
BstV1I	GCAGC	3 cut(s)	98, 582, 787
BstZ17I	GTATAC	1 cut(s)	475
BsuI	GTATCC	1 cut(s)	513
BsuRI	GGCC	1 cut(s)	374
BtsCI	GGATG	1 cut(s)	16
BtsIMutI	CAGTG	1 cut(s)	649
Cac8I	GCNNGC	1 cut(s)	151
CfoI	GCGC	2 cut(s)	49, 595
Csp6I	GTAC	2 cut(s)	269, 379
CviAII	CATG	3 cut(s)	154, 214, 272
CviQI	GTAC	2 cut(s)	269, 379
DdeI	CTNAG	4 cut(s)	52, 254, 314, 369
DpnI	GATC	1 cut(s)	162
DpnII	GATC	1 cut(s)	160
DraI	TTTAAA	1 cut(s)	222
DraIII	CACNNNGTG	2 cut(s)	583, 604
Eam1104I	CTCTTC	3 cut(s)	166, 603, 618
EarI	CTCTTC	3 cut(s)	166, 603, 618
Eco105I	TACGTA	1 cut(s)	290
Eco130I	CCWWGG	1 cut(s)	166
Eco72I	CACGTG	1 cut(s)	756
EcoT14I	CCWWGG	1 cut(s)	166
ErhI	CCWWGG	1 cut(s)	166
FaeI	CATG	3 cut(s)	157, 217, 275
FaqI	GGGAC	1 cut(s)	290
FatI	CATG	3 cut(s)	153, 213, 271
FblI	GTMKAC	1 cut(s)	474
Fnu4HI	GCNGC	4 cut(s)	45, 112, 596, 776
FokI	GGATG	1 cut(s)	23
Fsp4HI	GCNGC	4 cut(s)	45, 112, 596, 776
FspBI	CTAG	4 cut(s)	60, 74, 761, 791
GlaI	GCGC	2 cut(s)	48, 594
GluI	GCNGC	4 cut(s)	45, 112, 596, 776
GsaI	CCCAGC	1 cut(s)	569
HaeIII	GGCC	1 cut(s)	374
HapII	CCGG	2 cut(s)	121, 375
HhaI	GCGC	2 cut(s)	49, 595
Hin1II	CATG	3 cut(s)	157, 217, 275
Hin6I	GCGC	2 cut(s)	47, 593
HinP1I	GCGC	2 cut(s)	47, 593
HinfI	GANTC	3 cut(s)	199, 520, 614
HpaII	CCGG	2 cut(s)	121, 375
HphI	GGTGA	2 cut(s)	595, 697
Hpy166II	GTNNAC	2 cut(s)	475, 577
Hpy188I	TCNGA	3 cut(s)	10, 315, 562
Hpy188III	TCNNGA	2 cut(s)	69, 102
Hpy8I	GTNNAC	2 cut(s)	475, 577
HpyAV	CCTTC	1 cut(s)	529
HpyCH4III	ACNGT	3 cut(s)	411, 449, 644
HpyCH4IV	ACGT	6 cut(s)	183, 231, 289, 500, 755, 767
HpyCH4V	TGCA	6 cut(s)	114, 153, 393, 598, 695, 775
HpyF10VI	GCNNNNNNNGC	2 cut(s)	53, 93
HpyF3I	CTNAG	4 cut(s)	52, 254, 314, 369
HpySE526I	ACGT	6 cut(s)	183, 231, 289, 500, 755, 767
Hsp92II	CATG	3 cut(s)	157, 217, 275
HspAI	GCGC	2 cut(s)	47, 593
Kzo9I	GATC	1 cut(s)	160
LguI	GCTCTTC	1 cut(s)	166
LmnI	GCTCC	1 cut(s)	562
LpnPI	CCDG	7 cut(s)	134, 348, 367, 388, 551, 650, 668
Lsp1109I	GCAGC	3 cut(s)	98, 582, 787
LweI	GCATC	2 cut(s)	339, 682
MaeI	CTAG	4 cut(s)	60, 74, 761, 791
MaeII	ACGT	6 cut(s)	183, 231, 289, 500, 755, 767
MaeIII	GTNAC	1 cut(s)	31
MalI	GATC	1 cut(s)	162
MboI	GATC	1 cut(s)	160
MboII	GAAGA	5 cut(s)	92, 183, 472, 620, 635
MluCI	AATT	3 cut(s)	191, 340, 657
MlyI	GAGTC	1 cut(s)	623
MmeI	TCCRAC	1 cut(s)	214
MnlI	CCTC	8 cut(s)	67, 364, 430, 463, 516, 579, 604, 709
MroXI	GAANNNNTTC	1 cut(s)	519
MseI	TTAA	6 cut(s)	126, 195, 221, 414, 428, 660
MslI	CAYNNNNRTG	1 cut(s)	450
MspA1I	CMGCKG	1 cut(s)	778
MspI	CCGG	2 cut(s)	121, 375
MspR9I	CCNGG	1 cut(s)	376
Mva1269I	GAATGC	2 cut(s)	89, 98
MvnI	CGCG	1 cut(s)	47
MwoI	GCNNNNNNNGC	2 cut(s)	53, 93
NciI	CCSGG	1 cut(s)	376
NdeII	GATC	1 cut(s)	160
NlaIII	CATG	3 cut(s)	157, 217, 275
NmuCI	GTSAC	1 cut(s)	31
PciSI	GCTCTTC	1 cut(s)	166
PctI	GAATGC	2 cut(s)	89, 98
PdmI	GAANNNNTTC	1 cut(s)	519
PfeI	GAWTC	2 cut(s)	199, 520
PflMI	CCANNNNNTGG	1 cut(s)	233
PkrI	GCNGC	4 cut(s)	46, 113, 597, 777
PleI	GAGTC	1 cut(s)	622
PmaCI	CACGTG	1 cut(s)	756
PmlI	CACGTG	1 cut(s)	756
PpsI	GAGTC	1 cut(s)	622
Ppu21I	YACGTR	3 cut(s)	184, 290, 756
Psp1406I	AACGTT	2 cut(s)	231, 767
PspCI	CACGTG	1 cut(s)	756
PspFI	CCCAGC	1 cut(s)	565
PvuII	CAGCTG	1 cut(s)	778
RsaI	GTAC	2 cut(s)	270, 380
RsaNI	GTAC	2 cut(s)	269, 379
RseI	CAYNNNNRTG	1 cut(s)	450
SapI	GCTCTTC	1 cut(s)	166
SaqAI	TTAA	6 cut(s)	126, 195, 221, 414, 428, 660
SatI	GCNGC	4 cut(s)	45, 112, 596, 776
Sau3AI	GATC	1 cut(s)	160
SchI	GAGTC	1 cut(s)	623
ScrFI	CCNGG	1 cut(s)	376
SfaNI	GCATC	2 cut(s)	339, 682
SmiMI	CAYNNNNRTG	1 cut(s)	450
SmlI	CTYRAG	2 cut(s)	100, 631
SmoI	CTYRAG	2 cut(s)	100, 631
SnaBI	TACGTA	1 cut(s)	290
SpeI	ACTAGT	1 cut(s)	73
Sse9I	AATT	3 cut(s)	191, 340, 657
SsiI	CCGC	1 cut(s)	45
SspMI	CTAG	4 cut(s)	60, 74, 761, 791
StyD4I	CCNGG	1 cut(s)	374
StyI	CCWWGG	1 cut(s)	166
TaaI	ACNGT	3 cut(s)	411, 449, 644
TaiI	ACGT	6 cut(s)	186, 234, 292, 503, 758, 770
TaqI	TCGA	2 cut(s)	70, 207
TasI	AATT	3 cut(s)	191, 340, 657
TatI	WGTACW	1 cut(s)	268
TauI	GCSGC	1 cut(s)	47
TfiI	GAWTC	2 cut(s)	199, 520
Tru1I	TTAA	6 cut(s)	126, 195, 221, 414, 428, 660
Tru9I	TTAA	6 cut(s)	126, 195, 221, 414, 428, 660
TscAI	CASTG	1 cut(s)	649
TseFI	GTSAC	1 cut(s)	31
TseI	GCWGC	3 cut(s)	111, 595, 775
Tsp45I	GTSAC	1 cut(s)	31
TspDTI	ATGAA	3 cut(s)	335, 434, 512
TspGWI	ACGGA	1 cut(s)	504
TspRI	CASTG	1 cut(s)	649
Van91I	CCANNNNNTGG	1 cut(s)	233
XapI	RAATTY	1 cut(s)	191
XmiI	GTMKAC	1 cut(s)	474
XmnI	GAANNNNTTC	1 cut(s)	519
XspI	CTAG	4 cut(s)	60, 74, 761, 791

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.