Pentatricopeptide repeat-containing protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G15130 |
| fragaria_vesca | FvH4_2g36310 |
| malus_domestica | MD08G1120300.v1.1 MD08G1120600.v1.1 MD15G1099700.v1.1 |
| prunus_persica | Prupe.1G454500_v2.0.a1 |
| pyrus_communis | pycom08g10070 pycom08g10090 pycom15g09170 |
| rosa_chinensis | RchiOBHm_Chr6g0305571 |
| rosa_laevigata | RLG00000010876 |
| rosa_multiflora | Rmu_co8434531.1_g000001 Rmu_sc0000841.1_g000001 Rmu_sc0001153.1_g000004 Rmu_sc0033568.1_g000001 |
| rosa_rugosa | Rorug06G0341800 |
| rosa_samantha | Rh6AG453800 Rh6BG447700 Rh6DG454100 |
| rosa_wichuraiana | Rw6G039550 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1433 |
| AccBSI | CCGCTC | 1 cut(s) | 10 |
| AccI | GTMKAC | 3 cut(s) | 617, 909, 921 |
| AccII | CGCG | 3 cut(s) | 471, 1247, 1383 |
| AciI | CCGC | 4 cut(s) | 10, 765, 1245, 1706 |
| AclI | AACGTT | 1 cut(s) | 1431 |
| AcsI | RAATTY | 3 cut(s) | 49, 464, 814 |
| AcuI | CTGAAG | 1 cut(s) | 798 |
| AcyI | GRCGYC | 1 cut(s) | 341 |
| AdeI | CACNNNGTG | 2 cut(s) | 1783, 1804 |
| AfaI | GTAC | 2 cut(s) | 1470, 1580 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 1433, 1519, 1581 |
| AflIII | ACRYGT | 2 cut(s) | 444, 1381 |
| AgsI | TTSAA | 6 cut(s) | 327, 410, 548, 1047, 1220, 1735 |
| AhlI | ACTAGT | 1 cut(s) | 1273 |
| AjnI | CCWGG | 1 cut(s) | 824 |
| AluBI | AGCT | 7 cut(s) | 566, 782, 875, 895, 1394, 1765, 1830 |
| AluI | AGCT | 7 cut(s) | 566, 782, 875, 895, 1394, 1765, 1830 |
| Alw21I | GWGCWC | 1 cut(s) | 742 |
| Alw26I | GTCTC | 3 cut(s) | 276, 1488, 1499 |
| AoxI | GGCC | 1 cut(s) | 649 |
| ApeKI | GCWGC | 4 cut(s) | 476, 892, 1311, 1795 |
| ApoI | RAATTY | 3 cut(s) | 49, 464, 814 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 40, 1719 |
| AspLEI | GCGC | 2 cut(s) | 1249, 1795 |
| AspS9I | GGNCC | 1 cut(s) | 1672 |
| AsuC2I | CCSGG | 1 cut(s) | 1576 |
| AsuHPI | GGTGA | 5 cut(s) | 100, 427, 436, 994, 1795 |
| AsuII | TTCGAA | 1 cut(s) | 34 |
| AvaII | GGWCC | 1 cut(s) | 1672 |
| BaeGI | GKGCMC | 2 cut(s) | 609, 771 |
| Bbv12I | GWGCWC | 1 cut(s) | 742 |
| BbvI | GCAGC | 4 cut(s) | 488, 904, 1298, 1782 |
| BccI | CCATC | 4 cut(s) | 79, 921, 1220, 1735 |
| BceAI | ACGGC | 2 cut(s) | 237, 1540 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 34, 68, 431, 465 |
| BciT130I | CCWGG | 1 cut(s) | 826 |
| BclI | TGATCA | 1 cut(s) | 1143 |
| BcnI | CCSGG | 1 cut(s) | 1576 |
| BcoDI | GTCTC | 3 cut(s) | 276, 1488, 1499 |
| BcuI | ACTAGT | 1 cut(s) | 1273 |
| BfaI | CTAG | 1 cut(s) | 1274 |
| BfmI | CTRYAG | 1 cut(s) | 1258 |
| BisI | GCNGC | 6 cut(s) | 11, 477, 893, 1245, 1312, 1796 |
| BlsI | GCNGC | 6 cut(s) | 12, 478, 894, 1246, 1313, 1797 |
| Bme1390I | CCNGG | 2 cut(s) | 826, 1576 |
| Bme18I | GGWCC | 1 cut(s) | 1672 |
| BmgT120I | GGNCC | 1 cut(s) | 1672 |
| BmrFI | CCNGG | 2 cut(s) | 826, 1576 |
| BmsI | GCATC | 7 cut(s) | 402, 486, 1191, 1539, 1561, 1689, 1711 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1494, 1526 |
| BpmI | CTGGAG | 2 cut(s) | 847, 1095 |
| Bpu10I | CCTNAGC | 1 cut(s) | 896 |
| Bpu14I | TTCGAA | 1 cut(s) | 34 |
| BpuEI | CTTGAG | 6 cut(s) | 320, 620, 837, 1049, 1285, 1852 |
| BpuMI | CCSGG | 1 cut(s) | 1576 |
| Bsa29I | ATCGAT | 1 cut(s) | 1662 |
| BsaBI | GATNNNNATC | 2 cut(s) | 1059, 1142 |
| BsaHI | GRCGYC | 1 cut(s) | 341 |
| BsaJI | CCNNGG | 2 cut(s) | 652, 1366 |
| BsaWI | WCCGGW | 1 cut(s) | 1320 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 1433, 1519, 1581 |
| Bse1I | ACTGG | 4 cut(s) | 258, 500, 1153, 1586 |
| Bse3DI | GCAATG | 1 cut(s) | 259 |
| Bse8I | GATNNNNATC | 2 cut(s) | 1059, 1142 |
| BseBI | CCWGG | 1 cut(s) | 826 |
| BseCI | ATCGAT | 1 cut(s) | 1662 |
| BseDI | CCNNGG | 2 cut(s) | 652, 1366 |
| BseGI | GGATG | 3 cut(s) | 90, 489, 1702 |
| BseJI | GATNNNNATC | 2 cut(s) | 1059, 1142 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 1433, 1519, 1581 |
| BseMI | GCAATG | 1 cut(s) | 259 |
| BseMII | CTCAG | 6 cut(s) | 189, 354, 797, 910, 1266, 1505 |
| BseNI | ACTGG | 4 cut(s) | 258, 500, 1153, 1586 |
| BseRI | GAGGAG | 2 cut(s) | 1826, 1838 |
| BseSI | GKGCMC | 2 cut(s) | 609, 771 |
| BseXI | GCAGC | 4 cut(s) | 488, 904, 1298, 1782 |
| BseYI | CCCAGC | 1 cut(s) | 1765 |
| BsgI | GTGCAG | 1 cut(s) | 1781 |
| Bsh1236I | CGCG | 3 cut(s) | 471, 1247, 1383 |
| BshFI | GGCC | 1 cut(s) | 651 |
| BshVI | ATCGAT | 1 cut(s) | 1662 |
| BsiHKAI | GWGCWC | 1 cut(s) | 742 |
| BsiSI | CCGG | 4 cut(s) | 534, 1321, 1377, 1575 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 1433, 1519, 1581 |
| BsmAI | GTCTC | 3 cut(s) | 276, 1488, 1499 |
| BsmBI | CGTCTC | 1 cut(s) | 1488 |
| BsmI | GAATGC | 4 cut(s) | 75, 198, 378, 1289 |
| BsnI | GGCC | 1 cut(s) | 651 |
| Bsp119I | TTCGAA | 1 cut(s) | 34 |
| Bsp1286I | GDGCHC | 3 cut(s) | 609, 742, 771 |
| Bsp143I | GATC | 6 cut(s) | 130, 748, 796, 1143, 1360, 1659 |
| Bsp68I | TCGCGA | 1 cut(s) | 471 |
| BspACI | CCGC | 4 cut(s) | 10, 765, 1245, 1706 |
| BspANI | GGCC | 1 cut(s) | 651 |
| BspCNI | CTCAG | 6 cut(s) | 190, 355, 796, 909, 1265, 1506 |
| BspDI | ATCGAT | 1 cut(s) | 1662 |
| BspFNI | CGCG | 3 cut(s) | 471, 1247, 1383 |
| BspQI | GCTCTTC | 1 cut(s) | 1366 |
| BspT104I | TTCGAA | 1 cut(s) | 34 |
| BsrBI | CCGCTC | 1 cut(s) | 10 |
| BsrDI | GCAATG | 1 cut(s) | 259 |
| BsrI | ACTGG | 4 cut(s) | 258, 500, 1153, 1586 |
| BssECI | CCNNGG | 2 cut(s) | 652, 1366 |
| BssMI | GATC | 6 cut(s) | 130, 748, 796, 1143, 1360, 1659 |
| BssNAI | GTATAC | 1 cut(s) | 618 |
| BssNI | GRCGYC | 1 cut(s) | 341 |
| BssT1I | CCWWGG | 1 cut(s) | 1366 |
| Bst1107I | GTATAC | 1 cut(s) | 618 |
| Bst2UI | CCWGG | 1 cut(s) | 826 |
| Bst4CI | ACNGT | 7 cut(s) | 41, 270, 421, 730, 1098, 1611, 1844 |
| Bst6I | CTCTTC | 2 cut(s) | 1366, 1803 |
| BstACI | GRCGYC | 1 cut(s) | 341 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1450 |
| BstBI | TTCGAA | 1 cut(s) | 34 |
| BstC8I | GCNNGC | 5 cut(s) | 75, 632, 767, 996, 1351 |
| BstDEI | CTNAG | 9 cut(s) | 198, 363, 783, 896, 1240, 1252, 1395, 1454, 1514 |
| BstF5I | GGATG | 3 cut(s) | 90, 489, 1702 |
| BstFNI | CGCG | 3 cut(s) | 471, 1247, 1383 |
| BstHHI | GCGC | 2 cut(s) | 1249, 1795 |
| BstKTI | GATC | 6 cut(s) | 133, 751, 799, 1146, 1363, 1662 |
| BstMAI | GTCTC | 3 cut(s) | 276, 1488, 1499 |
| BstMBI | GATC | 6 cut(s) | 130, 748, 796, 1143, 1360, 1659 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 965, 1253, 1450 |
| BstNI | CCWGG | 1 cut(s) | 826 |
| BstNSI | RCATGY | 2 cut(s) | 448, 998 |
| BstSCI | CCNGG | 2 cut(s) | 824, 1574 |
| BstSFI | CTRYAG | 1 cut(s) | 1258 |
| BstSLI | GKGCMC | 2 cut(s) | 609, 771 |
| BstUI | CGCG | 3 cut(s) | 471, 1247, 1383 |
| BstV1I | GCAGC | 4 cut(s) | 488, 904, 1298, 1782 |
| BstZ17I | GTATAC | 1 cut(s) | 618 |
| Bsu15I | ATCGAT | 1 cut(s) | 1662 |
| BsuRI | GGCC | 1 cut(s) | 651 |
| BsuTUI | ATCGAT | 1 cut(s) | 1662 |
| BtsCI | GGATG | 3 cut(s) | 90, 489, 1702 |
| BtsIMutI | CAGTG | 6 cut(s) | 265, 266, 426, 1041, 1146, 1849 |
| BtuMI | TCGCGA | 1 cut(s) | 471 |
| Cac8I | GCNNGC | 5 cut(s) | 75, 632, 767, 996, 1351 |
| CfoI | GCGC | 2 cut(s) | 1249, 1795 |
| Cfr13I | GGNCC | 1 cut(s) | 1672 |
| ClaI | ATCGAT | 1 cut(s) | 1662 |
| CseI | GACGC | 2 cut(s) | 330, 1389 |
| Csp6I | GTAC | 2 cut(s) | 1469, 1579 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 241, 276 |
| CviAII | CATG | 8 cut(s) | 80, 445, 995, 1163, 1354, 1414, 1472, 1882 |
| CviQI | GTAC | 2 cut(s) | 1469, 1579 |
| DdeI | CTNAG | 9 cut(s) | 198, 363, 783, 896, 1240, 1252, 1395, 1454, 1514 |
| DpnI | GATC | 6 cut(s) | 132, 750, 798, 1145, 1362, 1661 |
| DpnII | GATC | 6 cut(s) | 130, 748, 796, 1143, 1360, 1659 |
| DraI | TTTAAA | 1 cut(s) | 1422 |
| DraIII | CACNNNGTG | 2 cut(s) | 1783, 1804 |
| Eam1104I | CTCTTC | 2 cut(s) | 1366, 1803 |
| EarI | CTCTTC | 2 cut(s) | 1366, 1803 |
| Eco130I | CCWWGG | 1 cut(s) | 1366 |
| Eco47I | GGWCC | 1 cut(s) | 1672 |
| Eco57I | CTGAAG | 1 cut(s) | 798 |
| EcoRII | CCWGG | 1 cut(s) | 824 |
| EcoT14I | CCWWGG | 1 cut(s) | 1366 |
| EcoT22I | ATGCAT | 3 cut(s) | 996, 1704, 1887 |
| ErhI | CCWWGG | 1 cut(s) | 1366 |
| Esp3I | CGTCTC | 1 cut(s) | 1488 |
| FaeI | CATG | 8 cut(s) | 83, 448, 998, 1166, 1357, 1417, 1475, 1885 |
| FatI | CATG | 8 cut(s) | 79, 444, 994, 1162, 1353, 1413, 1471, 1881 |
| FauI | CCCGC | 1 cut(s) | 758 |
| FbaI | TGATCA | 1 cut(s) | 1143 |
| FblI | GTMKAC | 3 cut(s) | 617, 909, 921 |
| Fnu4HI | GCNGC | 6 cut(s) | 11, 477, 893, 1245, 1312, 1796 |
| FokI | GGATG | 3 cut(s) | 97, 496, 1689 |
| Fsp4HI | GCNGC | 6 cut(s) | 11, 477, 893, 1245, 1312, 1796 |
| FspBI | CTAG | 1 cut(s) | 1274 |
| GlaI | GCGC | 2 cut(s) | 1248, 1794 |
| GluI | GCNGC | 6 cut(s) | 11, 477, 893, 1245, 1312, 1796 |
| GsaI | CCCAGC | 1 cut(s) | 1769 |
| GsuI | CTGGAG | 2 cut(s) | 847, 1095 |
| HaeIII | GGCC | 1 cut(s) | 651 |
| HapII | CCGG | 4 cut(s) | 534, 1321, 1377, 1575 |
| HgaI | GACGC | 2 cut(s) | 330, 1389 |
| HhaI | GCGC | 2 cut(s) | 1249, 1795 |
| Hin1I | GRCGYC | 1 cut(s) | 341 |
| Hin1II | CATG | 8 cut(s) | 83, 448, 998, 1166, 1357, 1417, 1475, 1885 |
| Hin6I | GCGC | 2 cut(s) | 1247, 1793 |
| HinP1I | GCGC | 2 cut(s) | 1247, 1793 |
| HincII | GTYRAC | 2 cut(s) | 910, 1540 |
| HindII | GTYRAC | 2 cut(s) | 910, 1540 |
| HinfI | GANTC | 9 cut(s) | 25, 102, 379, 537, 705, 838, 1399, 1720, 1814 |
| HpaII | CCGG | 4 cut(s) | 534, 1321, 1377, 1575 |
| HphI | GGTGA | 5 cut(s) | 100, 427, 436, 994, 1795 |
| Hpy166II | GTNNAC | 8 cut(s) | 219, 318, 618, 910, 922, 1540, 1675, 1777 |
| Hpy188I | TCNGA | 5 cut(s) | 656, 723, 786, 1210, 1762 |
| Hpy188III | TCNNGA | 7 cut(s) | 345, 470, 854, 1052, 1269, 1302, 1513 |
| Hpy8I | GTNNAC | 8 cut(s) | 219, 318, 618, 910, 922, 1540, 1675, 1777 |
| HpyAV | CCTTC | 5 cut(s) | 41, 542, 1729, 1813, 1899 |
| HpyCH4III | ACNGT | 7 cut(s) | 41, 270, 421, 730, 1098, 1611, 1844 |
| HpyCH4IV | ACGT | 3 cut(s) | 1431, 1497, 1645 |
| HpyCH4V | TGCA | 9 cut(s) | 73, 376, 393, 589, 994, 1353, 1702, 1798, 1885 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 965, 1253, 1450 |
| HpyF3I | CTNAG | 9 cut(s) | 198, 363, 783, 896, 1240, 1252, 1395, 1454, 1514 |
| HpySE526I | ACGT | 3 cut(s) | 1431, 1497, 1645 |
| Hsp92I | GRCGYC | 1 cut(s) | 341 |
| Hsp92II | CATG | 8 cut(s) | 83, 448, 998, 1166, 1357, 1417, 1475, 1885 |
| HspAI | GCGC | 2 cut(s) | 1247, 1793 |
| Ksp22I | TGATCA | 1 cut(s) | 1143 |
| Kzo9I | GATC | 6 cut(s) | 130, 748, 796, 1143, 1360, 1659 |
| LguI | GCTCTTC | 1 cut(s) | 1366 |
| LmnI | GCTCC | 2 cut(s) | 656, 1762 |
| Lsp1109I | GCAGC | 4 cut(s) | 488, 904, 1298, 1782 |
| LweI | GCATC | 7 cut(s) | 402, 486, 1191, 1539, 1561, 1689, 1711 |
| MaeI | CTAG | 1 cut(s) | 1274 |
| MaeII | ACGT | 3 cut(s) | 1431, 1497, 1645 |
| MaeIII | GTNAC | 4 cut(s) | 264, 415, 1036, 1231 |
| MalI | GATC | 6 cut(s) | 132, 750, 798, 1145, 1362, 1661 |
| MbiI | CCGCTC | 1 cut(s) | 10 |
| MboI | GATC | 6 cut(s) | 130, 748, 796, 1143, 1360, 1659 |
| MboII | GAAGA | 4 cut(s) | 1292, 1383, 1672, 1820 |
| MhlI | GDGCHC | 3 cut(s) | 609, 742, 771 |
| MluI | ACGCGT | 1 cut(s) | 1381 |
| MlyI | GAGTC | 1 cut(s) | 1823 |
| MmeI | TCCRAC | 2 cut(s) | 497, 1414 |
| Mph1103I | ATGCAT | 3 cut(s) | 996, 1704, 1887 |
| MroXI | GAANNNNTTC | 2 cut(s) | 40, 1719 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1034 |
| MspI | CCGG | 4 cut(s) | 534, 1321, 1377, 1575 |
| MspR9I | CCNGG | 2 cut(s) | 826, 1576 |
| Mva1269I | GAATGC | 4 cut(s) | 75, 198, 378, 1289 |
| MvaI | CCWGG | 1 cut(s) | 826 |
| MvnI | CGCG | 3 cut(s) | 471, 1247, 1383 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 965, 1253, 1450 |
| NciI | CCSGG | 1 cut(s) | 1576 |
| NdeII | GATC | 6 cut(s) | 130, 748, 796, 1143, 1360, 1659 |
| NlaIII | CATG | 8 cut(s) | 83, 448, 998, 1166, 1357, 1417, 1475, 1885 |
| NmuCI | GTSAC | 4 cut(s) | 264, 415, 1036, 1231 |
| NruI | TCGCGA | 1 cut(s) | 471 |
| NsiI | ATGCAT | 3 cut(s) | 996, 1704, 1887 |
| NspI | RCATGY | 2 cut(s) | 448, 998 |
| NspV | TTCGAA | 1 cut(s) | 34 |
| PaeI | GCATGC | 1 cut(s) | 998 |
| PciI | ACATGT | 1 cut(s) | 444 |
| PciSI | GCTCTTC | 1 cut(s) | 1366 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 801 |
| PctI | GAATGC | 4 cut(s) | 75, 198, 378, 1289 |
| PdmI | GAANNNNTTC | 2 cut(s) | 40, 1719 |
| PfeI | GAWTC | 8 cut(s) | 25, 102, 379, 537, 705, 838, 1399, 1720 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1433 |
| PfoI | TCCNGGA | 1 cut(s) | 824 |
| PkrI | GCNGC | 6 cut(s) | 12, 478, 894, 1246, 1313, 1797 |
| PleI | GAGTC | 1 cut(s) | 1822 |
| PpsI | GAGTC | 1 cut(s) | 1822 |
| PscI | ACATGT | 1 cut(s) | 444 |
| Psp1406I | AACGTT | 1 cut(s) | 1431 |
| Psp6I | CCWGG | 1 cut(s) | 824 |
| PspFI | CCCAGC | 1 cut(s) | 1765 |
| PspGI | CCWGG | 1 cut(s) | 824 |
| PspPI | GGNCC | 1 cut(s) | 1672 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 849, 881 |
| RruI | TCGCGA | 1 cut(s) | 471 |
| RsaI | GTAC | 2 cut(s) | 1470, 1580 |
| RsaNI | GTAC | 2 cut(s) | 1469, 1579 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1034 |
| SalI | GTCGAC | 1 cut(s) | 908 |
| SapI | GCTCTTC | 1 cut(s) | 1366 |
| SatI | GCNGC | 6 cut(s) | 11, 477, 893, 1245, 1312, 1796 |
| Sau3AI | GATC | 6 cut(s) | 130, 748, 796, 1143, 1360, 1659 |
| Sau96I | GGNCC | 1 cut(s) | 1672 |
| SchI | GAGTC | 1 cut(s) | 1823 |
| ScrFI | CCNGG | 2 cut(s) | 826, 1576 |
| SduI | GDGCHC | 3 cut(s) | 609, 742, 771 |
| SfaNI | GCATC | 7 cut(s) | 402, 486, 1191, 1539, 1561, 1689, 1711 |
| SfcI | CTRYAG | 1 cut(s) | 1258 |
| SfuI | TTCGAA | 1 cut(s) | 34 |
| SinI | GGWCC | 1 cut(s) | 1672 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1034 |
| SmlI | CTYRAG | 6 cut(s) | 335, 635, 852, 1064, 1300, 1831 |
| SmoI | CTYRAG | 6 cut(s) | 335, 635, 852, 1064, 1300, 1831 |
| SpeI | ACTAGT | 1 cut(s) | 1273 |
| SphI | GCATGC | 1 cut(s) | 998 |
| SsiI | CCGC | 4 cut(s) | 10, 765, 1245, 1706 |
| SspMI | CTAG | 1 cut(s) | 1274 |
| StyD4I | CCNGG | 2 cut(s) | 824, 1574 |
| StyI | CCWWGG | 1 cut(s) | 1366 |
| TaaI | ACNGT | 7 cut(s) | 41, 270, 421, 730, 1098, 1611, 1844 |
| TaiI | ACGT | 3 cut(s) | 1434, 1500, 1648 |
| TatI | WGTACW | 1 cut(s) | 1468 |
| TauI | GCSGC | 2 cut(s) | 13, 1247 |
| TfiI | GAWTC | 8 cut(s) | 25, 102, 379, 537, 705, 838, 1399, 1720 |
| TscAI | CASTG | 6 cut(s) | 265, 273, 426, 1041, 1153, 1849 |
| TseFI | GTSAC | 4 cut(s) | 264, 415, 1036, 1231 |
| TseI | GCWGC | 4 cut(s) | 476, 892, 1311, 1795 |
| Tsp45I | GTSAC | 4 cut(s) | 264, 415, 1036, 1231 |
| TspDTI | ATGAA | 5 cut(s) | 17, 50, 1119, 1634, 1712 |
| TspGWI | ACGGA | 3 cut(s) | 496, 1170, 1704 |
| TspRI | CASTG | 6 cut(s) | 265, 273, 426, 1041, 1153, 1849 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1433 |
| VpaK11BI | GGWCC | 1 cut(s) | 1672 |
| XapI | RAATTY | 3 cut(s) | 49, 464, 814 |
| XceI | RCATGY | 2 cut(s) | 448, 998 |
| XmiI | GTMKAC | 3 cut(s) | 617, 909, 921 |
| XmnI | GAANNNNTTC | 2 cut(s) | 40, 1719 |
| XspI | CTAG | 1 cut(s) | 1274 |
| Zsp2I | ATGCAT | 3 cut(s) | 996, 1704, 1887 |