Pentatricopeptide repeat-containing protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G15130 |
| fragaria_vesca | FvH4_2g36310 |
| malus_domestica | MD08G1120300.v1.1 MD08G1120600.v1.1 MD15G1099700.v1.1 |
| prunus_persica | Prupe.1G454500_v2.0.a1 |
| pyrus_communis | pycom08g10070 pycom08g10090 pycom15g09170 |
| rosa_chinensis | RchiOBHm_Chr6g0305571 |
| rosa_laevigata | RLG00000010876 |
| rosa_multiflora | Rmu_co8434531.1_g000001 Rmu_sc0000841.1_g000001 Rmu_sc0001153.1_g000004 Rmu_sc0033568.1_g000001 |
| rosa_rugosa | Rorug06G0341800 |
| rosa_samantha | Rh6AG453800 Rh6BG447700 Rh6DG454100 |
| rosa_wichuraiana | Rw6G039550 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 20 |
| AccI | GTMKAC | 1 cut(s) | 261 |
| AciI | CCGC | 1 cut(s) | 293 |
| AclI | AACGTT | 1 cut(s) | 18 |
| AdeI | CACNNNGTG | 1 cut(s) | 370 |
| AfaI | GTAC | 1 cut(s) | 167 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 20, 168 |
| AgsI | TTSAA | 4 cut(s) | 322, 395, 505, 565 |
| AluBI | AGCT | 2 cut(s) | 352, 417 |
| AluI | AGCT | 2 cut(s) | 352, 417 |
| Alw26I | GTCTC | 2 cut(s) | 278, 464 |
| ApeKI | GCWGC | 1 cut(s) | 382 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 306 |
| AspLEI | GCGC | 1 cut(s) | 382 |
| AsuC2I | CCSGG | 1 cut(s) | 163 |
| AsuHPI | GGTGA | 3 cut(s) | 382, 479, 592 |
| BauI | CACGAG | 1 cut(s) | 619 |
| BbvI | GCAGC | 1 cut(s) | 369 |
| BccI | CCATC | 1 cut(s) | 322 |
| BceAI | ACGGC | 2 cut(s) | 127, 631 |
| BcnI | CCSGG | 1 cut(s) | 163 |
| BcoDI | GTCTC | 2 cut(s) | 278, 464 |
| BisI | GCNGC | 1 cut(s) | 383 |
| BlsI | GCNGC | 1 cut(s) | 384 |
| Bme1390I | CCNGG | 1 cut(s) | 163 |
| BmrFI | CCNGG | 1 cut(s) | 163 |
| BmsI | GCATC | 4 cut(s) | 126, 148, 298, 577 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 602, 634 |
| BpuEI | CTTGAG | 2 cut(s) | 439, 532 |
| BpuMI | CCSGG | 1 cut(s) | 163 |
| Bsa29I | ATCGAT | 1 cut(s) | 249 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 20, 168 |
| Bse1I | ACTGG | 1 cut(s) | 173 |
| BseCI | ATCGAT | 1 cut(s) | 249 |
| BseGI | GGATG | 1 cut(s) | 289 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 20, 168 |
| BseMII | CTCAG | 1 cut(s) | 92 |
| BseNI | ACTGG | 1 cut(s) | 173 |
| BseRI | GAGGAG | 2 cut(s) | 413, 425 |
| BseXI | GCAGC | 1 cut(s) | 369 |
| BseYI | CCCAGC | 1 cut(s) | 352 |
| BsgI | GTGCAG | 1 cut(s) | 368 |
| BshVI | ATCGAT | 1 cut(s) | 249 |
| BsiSI | CCGG | 1 cut(s) | 162 |
| BslFI | GGGAC | 1 cut(s) | 77 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 20, 168 |
| BsmAI | GTCTC | 2 cut(s) | 278, 464 |
| BsmBI | CGTCTC | 1 cut(s) | 278 |
| BsmFI | GGGAC | 1 cut(s) | 77 |
| Bsp143I | GATC | 1 cut(s) | 246 |
| BspACI | CCGC | 1 cut(s) | 293 |
| BspCNI | CTCAG | 1 cut(s) | 93 |
| BspDI | ATCGAT | 1 cut(s) | 249 |
| BsrI | ACTGG | 1 cut(s) | 173 |
| BssMI | GATC | 1 cut(s) | 246 |
| BssSI | CACGAG | 1 cut(s) | 619 |
| Bst2BI | CACGAG | 1 cut(s) | 619 |
| Bst4CI | ACNGT | 2 cut(s) | 198, 431 |
| Bst6I | CTCTTC | 2 cut(s) | 329, 390 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 37 |
| BstC8I | GCNNGC | 1 cut(s) | 453 |
| BstDEI | CTNAG | 2 cut(s) | 41, 101 |
| BstF5I | GGATG | 1 cut(s) | 289 |
| BstHHI | GCGC | 1 cut(s) | 382 |
| BstKTI | GATC | 1 cut(s) | 249 |
| BstMAI | GTCTC | 2 cut(s) | 278, 464 |
| BstMBI | GATC | 1 cut(s) | 246 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 37 |
| BstSCI | CCNGG | 1 cut(s) | 161 |
| BstV1I | GCAGC | 1 cut(s) | 369 |
| Bsu15I | ATCGAT | 1 cut(s) | 249 |
| BsuTUI | ATCGAT | 1 cut(s) | 249 |
| BtsCI | GGATG | 1 cut(s) | 289 |
| BtsIMutI | CAGTG | 1 cut(s) | 436 |
| Cac8I | GCNNGC | 1 cut(s) | 453 |
| CfoI | GCGC | 1 cut(s) | 382 |
| ClaI | ATCGAT | 1 cut(s) | 249 |
| CseI | GACGC | 2 cut(s) | 240, 295 |
| Csp6I | GTAC | 1 cut(s) | 166 |
| CviAII | CATG | 2 cut(s) | 59, 533 |
| CviJI | RGCY | 6 cut(s) | 227, 352, 417, 451, 549, 618 |
| CviKI_1 | RGCY | 6 cut(s) | 227, 352, 417, 451, 549, 618 |
| CviQI | GTAC | 1 cut(s) | 166 |
| DdeI | CTNAG | 2 cut(s) | 41, 101 |
| DpnI | GATC | 1 cut(s) | 248 |
| DpnII | GATC | 1 cut(s) | 246 |
| DraI | TTTAAA | 1 cut(s) | 9 |
| DraIII | CACNNNGTG | 1 cut(s) | 370 |
| Eam1104I | CTCTTC | 2 cut(s) | 329, 390 |
| EarI | CTCTTC | 2 cut(s) | 329, 390 |
| EcoT22I | ATGCAT | 1 cut(s) | 538 |
| Esp3I | CGTCTC | 1 cut(s) | 278 |
| FaeI | CATG | 2 cut(s) | 62, 536 |
| FaiI | YATR | 5 cut(s) | 60, 132, 360, 534, 545 |
| FaqI | GGGAC | 1 cut(s) | 77 |
| FatI | CATG | 2 cut(s) | 58, 532 |
| FblI | GTMKAC | 1 cut(s) | 261 |
| Fnu4HI | GCNGC | 1 cut(s) | 383 |
| FokI | GGATG | 1 cut(s) | 276 |
| Fsp4HI | GCNGC | 1 cut(s) | 383 |
| GlaI | GCGC | 1 cut(s) | 381 |
| GluI | GCNGC | 1 cut(s) | 383 |
| GsaI | CCCAGC | 1 cut(s) | 356 |
| HapII | CCGG | 1 cut(s) | 162 |
| HgaI | GACGC | 2 cut(s) | 240, 295 |
| HhaI | GCGC | 1 cut(s) | 382 |
| Hin1II | CATG | 2 cut(s) | 62, 536 |
| Hin6I | GCGC | 1 cut(s) | 380 |
| HinP1I | GCGC | 1 cut(s) | 380 |
| HincII | GTYRAC | 1 cut(s) | 127 |
| HindII | GTYRAC | 1 cut(s) | 127 |
| HinfI | GANTC | 3 cut(s) | 307, 401, 493 |
| HpaII | CCGG | 1 cut(s) | 162 |
| HphI | GGTGA | 3 cut(s) | 382, 479, 592 |
| Hpy166II | GTNNAC | 3 cut(s) | 127, 262, 364 |
| Hpy188I | TCNGA | 3 cut(s) | 102, 349, 498 |
| Hpy188III | TCNNGA | 1 cut(s) | 505 |
| Hpy8I | GTNNAC | 3 cut(s) | 127, 262, 364 |
| HpyAV | CCTTC | 5 cut(s) | 316, 400, 472, 550, 559 |
| HpyCH4III | ACNGT | 2 cut(s) | 198, 431 |
| HpyCH4IV | ACGT | 1 cut(s) | 18 |
| HpyCH4V | TGCA | 3 cut(s) | 385, 536, 590 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 37 |
| HpyF3I | CTNAG | 2 cut(s) | 41, 101 |
| HpySE526I | ACGT | 1 cut(s) | 18 |
| Hsp92II | CATG | 2 cut(s) | 62, 536 |
| HspAI | GCGC | 1 cut(s) | 380 |
| Kzo9I | GATC | 1 cut(s) | 246 |
| LmnI | GCTCC | 1 cut(s) | 349 |
| LpnPI | CCDG | 6 cut(s) | 135, 154, 175, 213, 338, 437 |
| Lsp1109I | GCAGC | 1 cut(s) | 369 |
| LweI | GCATC | 4 cut(s) | 126, 148, 298, 577 |
| MaeII | ACGT | 1 cut(s) | 18 |
| MaeIII | GTNAC | 1 cut(s) | 116 |
| MalI | GATC | 1 cut(s) | 248 |
| MboI | GATC | 1 cut(s) | 246 |
| MboII | GAAGA | 3 cut(s) | 259, 346, 407 |
| MlyI | GAGTC | 1 cut(s) | 410 |
| MnlI | CCTC | 6 cut(s) | 217, 250, 366, 391, 403, 604 |
| Mph1103I | ATGCAT | 1 cut(s) | 538 |
| MroXI | GAANNNNTTC | 1 cut(s) | 306 |
| MseI | TTAA | 3 cut(s) | 8, 201, 215 |
| MspI | CCGG | 1 cut(s) | 162 |
| MspR9I | CCNGG | 1 cut(s) | 163 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 37 |
| NciI | CCSGG | 1 cut(s) | 163 |
| NdeII | GATC | 1 cut(s) | 246 |
| NlaIII | CATG | 2 cut(s) | 62, 536 |
| NsiI | ATGCAT | 1 cut(s) | 538 |
| PdmI | GAANNNNTTC | 1 cut(s) | 306 |
| PfeI | GAWTC | 2 cut(s) | 307, 493 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 20 |
| PkrI | GCNGC | 1 cut(s) | 384 |
| PleI | GAGTC | 1 cut(s) | 409 |
| PpsI | GAGTC | 1 cut(s) | 409 |
| Psp1406I | AACGTT | 1 cut(s) | 18 |
| PspFI | CCCAGC | 1 cut(s) | 352 |
| RsaI | GTAC | 1 cut(s) | 167 |
| RsaNI | GTAC | 1 cut(s) | 166 |
| SaqAI | TTAA | 3 cut(s) | 8, 201, 215 |
| SatI | GCNGC | 1 cut(s) | 383 |
| Sau3AI | GATC | 1 cut(s) | 246 |
| SchI | GAGTC | 1 cut(s) | 410 |
| ScrFI | CCNGG | 1 cut(s) | 163 |
| SetI | ASST | 9 cut(s) | 21, 79, 261, 354, 377, 419, 561, 570, 599 |
| SfaNI | GCATC | 4 cut(s) | 126, 148, 298, 577 |
| SmlI | CTYRAG | 2 cut(s) | 418, 511 |
| SmoI | CTYRAG | 2 cut(s) | 418, 511 |
| SsiI | CCGC | 1 cut(s) | 293 |
| StyD4I | CCNGG | 1 cut(s) | 161 |
| TaaI | ACNGT | 2 cut(s) | 198, 431 |
| TaiI | ACGT | 1 cut(s) | 21 |
| TaqI | TCGA | 3 cut(s) | 249, 404, 554 |
| TfiI | GAWTC | 2 cut(s) | 307, 493 |
| Tru1I | TTAA | 3 cut(s) | 8, 201, 215 |
| Tru9I | TTAA | 3 cut(s) | 8, 201, 215 |
| TscAI | CASTG | 1 cut(s) | 436 |
| TseI | GCWGC | 1 cut(s) | 382 |
| TspDTI | ATGAA | 2 cut(s) | 221, 299 |
| TspGWI | ACGGA | 1 cut(s) | 291 |
| TspRI | CASTG | 1 cut(s) | 436 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 20 |
| XmiI | GTMKAC | 1 cut(s) | 261 |
| XmnI | GAANNNNTTC | 1 cut(s) | 306 |
| Zsp2I | ATGCAT | 1 cut(s) | 538 |