Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0033568.1

Orthogroup ID

OG0011061

Physical Location & Seq

Genomic Coordinates Forward (+)

2 .. 1675

Gene Structure 1674 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0033568.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1674 bp

atgtgcgttaagtctggttatgaatgggctgcagtggtgagcaatgctatccttgacatgtatgtgaaatgtggaagagttagtgaagcgtccaggatgttcagtgttatgccggctaagaatgttattacttggaacgcaatgatagcgggatgcacggttgaaggaaatggggagaaagcgttggtattgtttaggaaaatgcaagagctgggagaagttccggatgagtatacgattacaagcacactcaaggcttgtagtggcgttggagcaattcgacaaggaagccaaatacattcctccttgatcacaagggggtttctgtgttcagttcggacgattattgcaggtgctctcgttgatatgtatgtgaagtgcaggcacttaactgaagctcagagagtgtttgatcaagttgaacagaagaatctaatatcttggagtgccctgattcttggttatgcccaagaatgcaatttagcacaggccatggagttgtttaggcagctcagagctagtgtatgtcatcaagtagatgggtttgttctgtcgagccttatgggtgtgtttgctgattttgctctagtagaacaaggtaggcaaatgcatgctttcaccactaaaatcccatctggtttagacatatcggtgtttaactcgattctggatatgtatctcaagtgtggtttgacagatgaggcagaaagactttttgatgaaactcagttgagaaatgtaatttcttggacaattatgatcaccgggtttggaaagcatggtctagggaagaaagctgtgcatcttttcaaccaaatgcaatcggaggaaatagaacctgatggagtgacttacttggcagtgctctcagcctgcagccattctggactaattcaagaatgccaagaatacttctcaagattgtgtcatgacaaacggattaagcaaactgtagagcattatgcttgcatggttgatctccttggtcgagctggaagattaaaagaagctaagaatctgatcgacagcatgctgctaaaaccaaatattggaatatggcagacattgcttagtgcttgtagggtacatggagaggtggagatagggagagaagtgggagagatgcttctgagattggatggcgataacccggtcaactatgtgatgctgtcaaacatctacgcagaggccggctactggaaggaatgtgagagaataagaaaactgtttaagaggaaggggttaaagaaagatgcagggcggagttgggtagagattgacaaggaggtcttcttcttctacaatggagataagagtcacccacttacagaaaagattcatcaagtattgaaggaaatggagaacagaataaaatctgagatcggctatgttcatgggttgaaatttgcactgcatgacgtagaggaggagtcaaaagaagagagcttgagagttcatagtgaaaaactggcaatcgggttggcattggtatgtggtgagcttgagaaagggaatagaacaattcggatcttcaagaacttgagggtatgtggtgattgccatgccttcattaaaggcttgtcaaaggttttgaaggtggtaattcttgtgagagatgctaacaggtttcgcaagtttgaggacggcgtgtgttcttgtggagattattggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF167 DYW_deaminase PPR PPR_2 Pkinase

Protein Analysis

557

Amino Acids

62.79

Weight (kDa)

7.77

Isoelectric Point (pI)

36.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011061)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G15130
fragaria_vesca	FvH4_2g36310
malus_domestica	MD08G1120300.v1.1 MD08G1120600.v1.1 MD15G1099700.v1.1
prunus_persica	Prupe.1G454500_v2.0.a1
pyrus_communis	pycom08g10070 pycom08g10090 pycom15g09170
rosa_chinensis	RchiOBHm_Chr6g0305571
rosa_laevigata	RLG00000010876
rosa_multiflora	Rmu_co8434531.1_g000001 Rmu_sc0000841.1_g000001 Rmu_sc0001153.1_g000004 Rmu_sc0033568.1_g000001
rosa_rugosa	Rorug06G0341800
rosa_samantha	Rh6AG453800 Rh6BG447700 Rh6DG454100
rosa_wichuraiana	Rw6G039550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	341
AasI	GACNNNNNNGTC	1 cut(s)	1286
Acc36I	ACCTGC	1 cut(s)	341
AccB7I	CCANNNNNTGG	1 cut(s)	1049
AccI	GTMKAC	1 cut(s)	233
AccIII	TCCGGA	1 cut(s)	223
AciI	CCGC	2 cut(s)	149, 1261
AclWI	GGATC	1 cut(s)	1535
AcsI	RAATTY	1 cut(s)	1403
AcuI	CTGAAG	1 cut(s)	414
AfaI	GTAC	1 cut(s)	1086
AfiI	CCNNNNNNNGG	2 cut(s)	1049, 1197
AflIII	ACRYGT	1 cut(s)	57
AgsI	TTSAA	8 cut(s)	164, 422, 811, 896, 1351, 1402, 1534, 1594
AjnI	CCWGG	1 cut(s)	92
AluBI	AGCT	9 cut(s)	211, 398, 511, 518, 797, 992, 1010, 1446, 1501
AluI	AGCT	9 cut(s)	211, 398, 511, 518, 797, 992, 1010, 1446, 1501
Alw21I	GWGCWC	2 cut(s)	358, 867
AlwI	GGATC	1 cut(s)	1535
Aor13HI	TCCGGA	1 cut(s)	223
AoxI	GGCC	2 cut(s)	489, 1188
ApeKI	GCWGC	4 cut(s)	29, 508, 876, 1033
ApoI	RAATTY	1 cut(s)	1403
Asp700I	GAANNNNTTC	1 cut(s)	1335
AsuC2I	CCSGG	2 cut(s)	766, 1151
AsuHPI	GGTGA	6 cut(s)	49, 610, 754, 1310, 1508, 1565
BaeGI	GKGCMC	1 cut(s)	451
BbsI	GAAGAC	1 cut(s)	1282
Bbv12I	GWGCWC	2 cut(s)	358, 867
BbvI	GCAGC	4 cut(s)	16, 520, 888, 1020
BccI	CCATC	4 cut(s)	533, 640, 836, 1133
BceAI	ACGGC	1 cut(s)	1660
BciT130I	CCWGG	1 cut(s)	94
BclI	TGATCA	3 cut(s)	309, 412, 759
BcnI	CCSGG	2 cut(s)	766, 1151
BfaI	CTAG	3 cut(s)	519, 587, 785
BfmI	CTRYAG	3 cut(s)	30, 874, 951
BfuAI	ACCTGC	1 cut(s)	341
BisI	GCNGC	4 cut(s)	30, 509, 877, 1034
BlsI	GCNGC	4 cut(s)	31, 510, 878, 1035
Bme1390I	CCNGG	3 cut(s)	94, 766, 1151
BmrFI	CCNGG	3 cut(s)	94, 766, 1151
BmsI	GCATC	6 cut(s)	143, 811, 1113, 1155, 1243, 1606
BpiI	GAAGAC	1 cut(s)	1282
BpuEI	CTTGAG	6 cut(s)	236, 665, 901, 1468, 1523, 1561
BpuMI	CCSGG	2 cut(s)	766, 1151
BsaBI	GATNNNNATC	1 cut(s)	675
BsaJI	CCNNGG	2 cut(s)	492, 982
BsaWI	WCCGGW	1 cut(s)	223
BsaXI	ACNNNNNCTCC	2 cut(s)	167, 197
Bsc4I	CCNNNNNNNGG	2 cut(s)	1049, 1197
Bse118I	RCCGGY	2 cut(s)	112, 1190
Bse1I	ACTGG	2 cut(s)	1202, 1473
Bse3DI	GCAATG	3 cut(s)	49, 147, 1064
Bse8I	GATNNNNATC	1 cut(s)	675
BseAI	TCCGGA	1 cut(s)	223
BseBI	CCWGG	1 cut(s)	94
BseDI	CCNNGG	2 cut(s)	492, 982
BseGI	GGATG	4 cut(s)	102, 158, 232, 1144
BseJI	GATNNNNATC	1 cut(s)	675
BseLI	CCNNNNNNNGG	2 cut(s)	1049, 1197
BseMI	GCAATG	3 cut(s)	49, 147, 1064
BseMII	CTCAG	6 cut(s)	413, 526, 740, 882, 1121, 1368
BseNI	ACTGG	2 cut(s)	1202, 1473
BseRI	GAGGAG	2 cut(s)	1439, 1442
BseSI	GKGCMC	1 cut(s)	451
BseXI	GCAGC	4 cut(s)	16, 520, 888, 1020
BseYI	CCCAGC	1 cut(s)	211
BsgI	GTGCAG	1 cut(s)	400
BshFI	GGCC	2 cut(s)	491, 1190
BsiHKAI	GWGCWC	2 cut(s)	358, 867
BsiSI	CCGG	5 cut(s)	113, 224, 765, 1151, 1191
BslI	CCNNNNNNNGG	2 cut(s)	1049, 1197
BsmI	GAATGC	2 cut(s)	479, 905
BsnI	GGCC	2 cut(s)	491, 1190
Bsp1286I	GDGCHC	3 cut(s)	358, 451, 867
Bsp13I	TCCGGA	1 cut(s)	223
Bsp143I	GATC	7 cut(s)	309, 412, 759, 976, 1020, 1380, 1527
Bsp19I	CCATGG	1 cut(s)	492
BspACI	CCGC	2 cut(s)	149, 1261
BspANI	GGCC	2 cut(s)	491, 1190
BspCNI	CTCAG	6 cut(s)	412, 525, 739, 881, 1122, 1369
BspEI	TCCGGA	1 cut(s)	223
BspHI	TCATGA	1 cut(s)	928
BspMAI	CTGCAG	2 cut(s)	34, 878
BspMI	ACCTGC	1 cut(s)	341
BspPI	GGATC	1 cut(s)	1535
BsrDI	GCAATG	3 cut(s)	49, 147, 1064
BsrFI	RCCGGY	2 cut(s)	112, 1190
BsrI	ACTGG	2 cut(s)	1202, 1473
BssAI	RCCGGY	2 cut(s)	112, 1190
BssECI	CCNNGG	2 cut(s)	492, 982
BssMI	GATC	7 cut(s)	309, 412, 759, 976, 1020, 1380, 1527
BssNAI	GTATAC	1 cut(s)	234
BssT1I	CCWWGG	2 cut(s)	492, 982
Bst1107I	GTATAC	1 cut(s)	234
Bst2UI	CCWGG	1 cut(s)	94
Bst4CI	ACNGT	3 cut(s)	160, 952, 1227
Bst6I	CTCTTC	2 cut(s)	70, 1434
BstAPI	GCANNNNNTGC	1 cut(s)	1066
BstC8I	GCNNGC	7 cut(s)	114, 383, 612, 874, 967, 1031, 1192
BstDEI	CTNAG	9 cut(s)	117, 399, 512, 726, 868, 1011, 1070, 1130, 1377
BstDSI	CCRYGG	1 cut(s)	492
BstF5I	GGATG	4 cut(s)	102, 158, 232, 1144
BstKTI	GATC	7 cut(s)	312, 415, 762, 979, 1023, 1383, 1530
BstMBI	GATC	7 cut(s)	309, 412, 759, 976, 1020, 1380, 1527
BstMWI	GCNNNNNNNGC	3 cut(s)	146, 581, 1066
BstNI	CCWGG	1 cut(s)	94
BstNSI	RCATGY	3 cut(s)	61, 614, 1033
BstSCI	CCNGG	3 cut(s)	92, 764, 1149
BstSFI	CTRYAG	3 cut(s)	30, 874, 951
BstSLI	GKGCMC	1 cut(s)	451
BstV1I	GCAGC	4 cut(s)	16, 520, 888, 1020
BstV2I	GAAGAC	1 cut(s)	1282
BstX2I	RGATCY	1 cut(s)	1527
BstYI	RGATCY	1 cut(s)	1527
BstZ17I	GTATAC	1 cut(s)	234
BsuRI	GGCC	2 cut(s)	491, 1190
BtgI	CCRYGG	1 cut(s)	492
BtsCI	GGATG	4 cut(s)	102, 158, 232, 1144
BtsI	GCAGTG	3 cut(s)	39, 867, 1409
BtsIMutI	CAGTG	4 cut(s)	39, 109, 867, 1409
BveI	ACCTGC	1 cut(s)	341
Cac8I	GCNNGC	7 cut(s)	114, 383, 612, 874, 967, 1031, 1192
CciI	TCATGA	1 cut(s)	928
Cfr10I	RCCGGY	2 cut(s)	112, 1190
CseI	GACGC	1 cut(s)	78
Csp6I	GTAC	1 cut(s)	1085
CviQI	GTAC	1 cut(s)	1085
DdeI	CTNAG	9 cut(s)	117, 399, 512, 726, 868, 1011, 1070, 1130, 1377
DpnI	GATC	7 cut(s)	311, 414, 761, 978, 1022, 1382, 1529
DpnII	GATC	7 cut(s)	309, 412, 759, 976, 1020, 1380, 1527
DrdI	GACNNNNNNGTC	1 cut(s)	1286
DseDI	GACNNNNNNGTC	1 cut(s)	1286
Eam1104I	CTCTTC	2 cut(s)	70, 1434
EarI	CTCTTC	2 cut(s)	70, 1434
EciI	GGCGGA	1 cut(s)	1276
Eco130I	CCWWGG	2 cut(s)	492, 982
Eco57I	CTGAAG	1 cut(s)	414
EcoRII	CCWGG	1 cut(s)	92
EcoT14I	CCWWGG	2 cut(s)	492, 982
EcoT22I	ATGCAT	1 cut(s)	612
ErhI	CCWWGG	2 cut(s)	492, 982
FalI	AAGNNNNNCTT	2 cut(s)	1274, 1306
FauI	CCCGC	1 cut(s)	142
FbaI	TGATCA	3 cut(s)	309, 412, 759
FblI	GTMKAC	1 cut(s)	233
Fnu4HI	GCNGC	4 cut(s)	30, 509, 877, 1034
FokI	GGATG	4 cut(s)	109, 165, 239, 1151
Fsp4HI	GCNGC	4 cut(s)	30, 509, 877, 1034
FspBI	CTAG	3 cut(s)	519, 587, 785
GluI	GCNGC	4 cut(s)	30, 509, 877, 1034
GsaI	CCCAGC	1 cut(s)	215
HaeIII	GGCC	2 cut(s)	491, 1190
HapII	CCGG	5 cut(s)	113, 224, 765, 1151, 1191
HgaI	GACGC	1 cut(s)	78
HincII	GTYRAC	1 cut(s)	1156
HindII	GTYRAC	1 cut(s)	1156
HinfI	GANTC	7 cut(s)	430, 454, 664, 1015, 1315, 1336, 1430
HpaII	CCGG	5 cut(s)	113, 224, 765, 1151, 1191
HphI	GGTGA	6 cut(s)	49, 610, 754, 1310, 1508, 1565
Hpy166II	GTNNAC	2 cut(s)	234, 1156
Hpy188I	TCNGA	8 cut(s)	339, 402, 515, 826, 1020, 1131, 1378, 1527
Hpy188III	TCNNGA	7 cut(s)	224, 668, 885, 896, 918, 929, 1534
Hpy8I	GTNNAC	2 cut(s)	234, 1156
HpyAV	CCTTC	6 cut(s)	158, 1195, 1231, 1345, 1576, 1588
HpyCH4III	ACNGT	3 cut(s)	160, 952, 1227
HpyCH4IV	ACGT	1 cut(s)	1419
HpyF10VI	GCNNNNNNNGC	3 cut(s)	146, 581, 1066
HpyF3I	CTNAG	9 cut(s)	117, 399, 512, 726, 868, 1011, 1070, 1130, 1377
HpySE526I	ACGT	1 cut(s)	1419
Kpn2I	TCCGGA	1 cut(s)	223
KroI	GCCGGC	2 cut(s)	112, 1190
KroNI	GCCGGC	2 cut(s)	114, 1192
Ksp22I	TGATCA	3 cut(s)	309, 412, 759
Kzo9I	GATC	7 cut(s)	309, 412, 759, 976, 1020, 1380, 1527
LmnI	GCTCC	1 cut(s)	272
Lsp1109I	GCAGC	4 cut(s)	16, 520, 888, 1020
LweI	GCATC	6 cut(s)	143, 811, 1113, 1155, 1243, 1606
MaeI	CTAG	3 cut(s)	519, 587, 785
MaeII	ACGT	1 cut(s)	1419
MaeIII	GTNAC	2 cut(s)	847, 1316
MalI	GATC	7 cut(s)	311, 414, 761, 978, 1022, 1382, 1529
MboI	GATC	7 cut(s)	309, 412, 759, 976, 1020, 1380, 1527
MboII	GAAGA	9 cut(s)	87, 439, 802, 1008, 1282, 1285, 1288, 1451, 1522
MflI	RGATCY	1 cut(s)	1527
MhlI	GDGCHC	3 cut(s)	358, 451, 867
MluCI	AATT	8 cut(s)	276, 478, 741, 753, 891, 1403, 1521, 1602
MlyI	GAGTC	2 cut(s)	1324, 1439
MmeI	TCCRAC	1 cut(s)	250
Mph1103I	ATGCAT	1 cut(s)	612
MroI	TCCGGA	1 cut(s)	223
MroNI	GCCGGC	2 cut(s)	112, 1190
MroXI	GAANNNNTTC	1 cut(s)	1335
MseI	TTAA	8 cut(s)	9, 389, 657, 942, 1001, 1230, 1244, 1572
MslI	CAYNNNNRTG	3 cut(s)	62, 650, 1489
MspI	CCGG	5 cut(s)	113, 224, 765, 1151, 1191
MspR9I	CCNGG	3 cut(s)	94, 766, 1151
Mva1269I	GAATGC	2 cut(s)	479, 905
MvaI	CCWGG	1 cut(s)	94
MwoI	GCNNNNNNNGC	3 cut(s)	146, 581, 1066
NaeI	GCCGGC	2 cut(s)	114, 1192
NciI	CCSGG	2 cut(s)	766, 1151
NcoI	CCATGG	1 cut(s)	492
NdeII	GATC	7 cut(s)	309, 412, 759, 976, 1020, 1380, 1527
NgoMIV	GCCGGC	2 cut(s)	112, 1190
NmuCI	GTSAC	2 cut(s)	847, 1316
NsiI	ATGCAT	1 cut(s)	612
NspI	RCATGY	3 cut(s)	61, 614, 1033
PaeI	GCATGC	2 cut(s)	614, 1033
PagI	TCATGA	1 cut(s)	928
PaqCI	CACCTGC	1 cut(s)	341
PciI	ACATGT	1 cut(s)	57
PctI	GAATGC	2 cut(s)	479, 905
PdiI	GCCGGC	2 cut(s)	114, 1192
PdmI	GAANNNNTTC	1 cut(s)	1335
PfeI	GAWTC	5 cut(s)	430, 454, 664, 1015, 1336
PflMI	CCANNNNNTGG	1 cut(s)	1049
PfoI	TCCNGGA	1 cut(s)	92
PkrI	GCNGC	4 cut(s)	31, 510, 878, 1035
PleI	GAGTC	2 cut(s)	1323, 1438
PpsI	GAGTC	2 cut(s)	1323, 1438
PscI	ACATGT	1 cut(s)	57
Psp6I	CCWGG	1 cut(s)	92
PspFI	CCCAGC	1 cut(s)	211
PspGI	CCWGG	1 cut(s)	92
PstI	CTGCAG	2 cut(s)	34, 878
PsuI	RGATCY	1 cut(s)	1527
RsaI	GTAC	1 cut(s)	1086
RsaNI	GTAC	1 cut(s)	1085
RseI	CAYNNNNRTG	3 cut(s)	62, 650, 1489
SaqAI	TTAA	8 cut(s)	9, 389, 657, 942, 1001, 1230, 1244, 1572
SatI	GCNGC	4 cut(s)	30, 509, 877, 1034
Sau3AI	GATC	7 cut(s)	309, 412, 759, 976, 1020, 1380, 1527
SchI	GAGTC	2 cut(s)	1324, 1439
ScrFI	CCNGG	3 cut(s)	94, 766, 1151
SduI	GDGCHC	3 cut(s)	358, 451, 867
SfaNI	GCATC	6 cut(s)	143, 811, 1113, 1155, 1243, 1606
SfcI	CTRYAG	3 cut(s)	30, 874, 951
SmiMI	CAYNNNNRTG	3 cut(s)	62, 650, 1489
SmlI	CTYRAG	6 cut(s)	251, 680, 916, 1447, 1502, 1540
SmoI	CTYRAG	6 cut(s)	251, 680, 916, 1447, 1502, 1540
SphI	GCATGC	2 cut(s)	614, 1033
Sse9I	AATT	8 cut(s)	276, 478, 741, 753, 891, 1403, 1521, 1602
SsiI	CCGC	2 cut(s)	149, 1261
SspI	AATATT	1 cut(s)	1048
SspMI	CTAG	3 cut(s)	519, 587, 785
StyD4I	CCNGG	3 cut(s)	92, 764, 1149
StyI	CCWWGG	2 cut(s)	492, 982
TaaI	ACNGT	3 cut(s)	160, 952, 1227
TaiI	ACGT	1 cut(s)	1422
TaqI	TCGA	5 cut(s)	280, 554, 662, 988, 1023
TasI	AATT	8 cut(s)	276, 478, 741, 753, 891, 1403, 1521, 1602
TfiI	GAWTC	5 cut(s)	430, 454, 664, 1015, 1336
Tru1I	TTAA	8 cut(s)	9, 389, 657, 942, 1001, 1230, 1244, 1572
Tru9I	TTAA	8 cut(s)	9, 389, 657, 942, 1001, 1230, 1244, 1572
TscAI	CASTG	4 cut(s)	39, 109, 867, 1416
TseFI	GTSAC	2 cut(s)	847, 1316
TseI	GCWGC	4 cut(s)	29, 508, 876, 1033
Tsp45I	GTSAC	2 cut(s)	847, 1316
TspDTI	ATGAA	6 cut(s)	36, 735, 1328, 1382, 1445, 1558
TspGWI	ACGGA	1 cut(s)	952
TspRI	CASTG	4 cut(s)	39, 109, 867, 1416
Van91I	CCANNNNNTGG	1 cut(s)	1049
XapI	RAATTY	1 cut(s)	1403
XceI	RCATGY	3 cut(s)	61, 614, 1033
XmiI	GTMKAC	1 cut(s)	233
XmnI	GAANNNNTTC	1 cut(s)	1335
XspI	CTAG	3 cut(s)	519, 587, 785
Zsp2I	ATGCAT	1 cut(s)	612

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.