Pentatricopeptide repeat-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G15130 |
| fragaria_vesca | FvH4_2g36310 |
| malus_domestica | MD08G1120300.v1.1 MD08G1120600.v1.1 MD15G1099700.v1.1 |
| prunus_persica | Prupe.1G454500_v2.0.a1 |
| pyrus_communis | pycom08g10070 pycom08g10090 pycom15g09170 |
| rosa_chinensis | RchiOBHm_Chr6g0305571 |
| rosa_laevigata | RLG00000010876 |
| rosa_multiflora | Rmu_co8434531.1_g000001 Rmu_sc0000841.1_g000001 Rmu_sc0001153.1_g000004 Rmu_sc0033568.1_g000001 |
| rosa_rugosa | Rorug06G0341800 |
| rosa_samantha | Rh6AG453800 Rh6BG447700 Rh6DG454100 |
| rosa_wichuraiana | Rw6G039550 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 728 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 1673 |
| Acc36I | ACCTGC | 1 cut(s) | 728 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1436 |
| AccI | GTMKAC | 1 cut(s) | 620 |
| AccIII | TCCGGA | 1 cut(s) | 610 |
| AciI | CCGC | 3 cut(s) | 34, 536, 1648 |
| AclWI | GGATC | 1 cut(s) | 1922 |
| AcsI | RAATTY | 2 cut(s) | 49, 1790 |
| AcuI | CTGAAG | 1 cut(s) | 801 |
| AcvI | CACGTG | 1 cut(s) | 176 |
| AcyI | GRCGYC | 1 cut(s) | 341 |
| AfaI | GTAC | 2 cut(s) | 317, 1473 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 1436, 1584 |
| AflIII | ACRYGT | 1 cut(s) | 444 |
| AgsI | TTSAA | 7 cut(s) | 551, 809, 1198, 1283, 1738, 1789, 1921 |
| AjnI | CCWGG | 2 cut(s) | 215, 479 |
| Alw21I | GWGCWC | 3 cut(s) | 175, 745, 1254 |
| Alw44I | GTGCAC | 1 cut(s) | 171 |
| AlwI | GGATC | 1 cut(s) | 1922 |
| Aor13HI | TCCGGA | 1 cut(s) | 610 |
| AoxI | GGCC | 2 cut(s) | 876, 1575 |
| ApaLI | GTGCAC | 1 cut(s) | 171 |
| ApeKI | GCWGC | 4 cut(s) | 416, 895, 1263, 1420 |
| ApoI | RAATTY | 2 cut(s) | 49, 1790 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1722 |
| AsuC2I | CCSGG | 2 cut(s) | 1153, 1538 |
| AsuHPI | GGTGA | 6 cut(s) | 436, 997, 1141, 1697, 1895, 1952 |
| BaeGI | GKGCMC | 2 cut(s) | 175, 838 |
| BbrPI | CACGTG | 1 cut(s) | 176 |
| BbsI | GAAGAC | 1 cut(s) | 1669 |
| Bbv12I | GWGCWC | 3 cut(s) | 175, 745, 1254 |
| BbvI | GCAGC | 4 cut(s) | 403, 907, 1275, 1407 |
| BccI | CCATC | 4 cut(s) | 920, 1027, 1223, 1520 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 13, 47 |
| BciT130I | CCWGG | 2 cut(s) | 217, 481 |
| BclI | TGATCA | 3 cut(s) | 696, 799, 1146 |
| BcnI | CCSGG | 2 cut(s) | 1153, 1538 |
| BfaI | CTAG | 3 cut(s) | 906, 974, 1172 |
| BfmI | CTRYAG | 3 cut(s) | 417, 1261, 1338 |
| BfuAI | ACCTGC | 1 cut(s) | 728 |
| BisI | GCNGC | 4 cut(s) | 417, 896, 1264, 1421 |
| BlsI | GCNGC | 4 cut(s) | 418, 897, 1265, 1422 |
| Bme1390I | CCNGG | 4 cut(s) | 217, 481, 1153, 1538 |
| BmrFI | CCNGG | 4 cut(s) | 217, 481, 1153, 1538 |
| BmsI | GCATC | 6 cut(s) | 108, 530, 1198, 1500, 1542, 1630 |
| BpiI | GAAGAC | 1 cut(s) | 1669 |
| BpuEI | CTTGAG | 7 cut(s) | 320, 623, 1052, 1288, 1855, 1910, 1948 |
| BpuMI | CCSGG | 2 cut(s) | 1153, 1538 |
| BsaAI | YACGTR | 1 cut(s) | 176 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1062 |
| BsaHI | GRCGYC | 1 cut(s) | 341 |
| BsaJI | CCNNGG | 2 cut(s) | 879, 1369 |
| BsaWI | WCCGGW | 1 cut(s) | 610 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 160, 190, 554, 584 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 1436, 1584 |
| Bse118I | RCCGGY | 2 cut(s) | 499, 1577 |
| Bse1I | ACTGG | 2 cut(s) | 1589, 1860 |
| Bse3DI | GCAATG | 4 cut(s) | 259, 436, 534, 1451 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1062 |
| BseAI | TCCGGA | 1 cut(s) | 610 |
| BseBI | CCWGG | 2 cut(s) | 217, 481 |
| BseDI | CCNNGG | 2 cut(s) | 879, 1369 |
| BseGI | GGATG | 5 cut(s) | 354, 489, 545, 619, 1531 |
| BseJI | GATNNNNATC | 1 cut(s) | 1062 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 1436, 1584 |
| BseMI | GCAATG | 4 cut(s) | 259, 436, 534, 1451 |
| BseMII | CTCAG | 7 cut(s) | 189, 800, 913, 1127, 1269, 1508, 1755 |
| BseNI | ACTGG | 2 cut(s) | 1589, 1860 |
| BseRI | GAGGAG | 2 cut(s) | 1826, 1829 |
| BseSI | GKGCMC | 2 cut(s) | 175, 838 |
| BseXI | GCAGC | 4 cut(s) | 403, 907, 1275, 1407 |
| BseYI | CCCAGC | 1 cut(s) | 598 |
| BsgI | GTGCAG | 1 cut(s) | 787 |
| BshFI | GGCC | 2 cut(s) | 878, 1577 |
| BsiHKAI | GWGCWC | 3 cut(s) | 175, 745, 1254 |
| BsiSI | CCGG | 5 cut(s) | 500, 611, 1152, 1538, 1578 |
| BslFI | GGGAC | 1 cut(s) | 114 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 1436, 1584 |
| BsmFI | GGGAC | 1 cut(s) | 114 |
| BsmI | GAATGC | 4 cut(s) | 198, 378, 866, 1292 |
| BsnI | GGCC | 2 cut(s) | 878, 1577 |
| Bsp1286I | GDGCHC | 4 cut(s) | 175, 745, 838, 1254 |
| Bsp13I | TCCGGA | 1 cut(s) | 610 |
| Bsp143I | GATC | 8 cut(s) | 130, 696, 799, 1146, 1363, 1407, 1767, 1914 |
| Bsp19I | CCATGG | 1 cut(s) | 879 |
| BspACI | CCGC | 3 cut(s) | 34, 536, 1648 |
| BspANI | GGCC | 2 cut(s) | 878, 1577 |
| BspCNI | CTCAG | 7 cut(s) | 190, 799, 912, 1126, 1268, 1509, 1756 |
| BspEI | TCCGGA | 1 cut(s) | 610 |
| BspHI | TCATGA | 1 cut(s) | 1315 |
| BspMAI | CTGCAG | 2 cut(s) | 421, 1265 |
| BspMI | ACCTGC | 1 cut(s) | 728 |
| BspPI | GGATC | 1 cut(s) | 1922 |
| BsrDI | GCAATG | 4 cut(s) | 259, 436, 534, 1451 |
| BsrFI | RCCGGY | 2 cut(s) | 499, 1577 |
| BsrI | ACTGG | 2 cut(s) | 1589, 1860 |
| BssAI | RCCGGY | 2 cut(s) | 499, 1577 |
| BssECI | CCNNGG | 2 cut(s) | 879, 1369 |
| BssMI | GATC | 8 cut(s) | 130, 696, 799, 1146, 1363, 1407, 1767, 1914 |
| BssNAI | GTATAC | 1 cut(s) | 621 |
| BssNI | GRCGYC | 1 cut(s) | 341 |
| BssT1I | CCWWGG | 2 cut(s) | 879, 1369 |
| Bst1107I | GTATAC | 1 cut(s) | 621 |
| Bst2UI | CCWGG | 2 cut(s) | 217, 481 |
| Bst4CI | ACNGT | 6 cut(s) | 41, 248, 386, 547, 1339, 1614 |
| Bst6I | CTCTTC | 2 cut(s) | 457, 1821 |
| BstACI | GRCGYC | 1 cut(s) | 341 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1453 |
| BstBAI | YACGTR | 1 cut(s) | 176 |
| BstC8I | GCNNGC | 8 cut(s) | 75, 501, 770, 999, 1261, 1354, 1418, 1579 |
| BstDSI | CCRYGG | 1 cut(s) | 879 |
| BstF5I | GGATG | 5 cut(s) | 354, 489, 545, 619, 1531 |
| BstKTI | GATC | 8 cut(s) | 133, 699, 802, 1149, 1366, 1410, 1770, 1917 |
| BstMBI | GATC | 8 cut(s) | 130, 696, 799, 1146, 1363, 1407, 1767, 1914 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 533, 968, 1453 |
| BstNI | CCWGG | 2 cut(s) | 217, 481 |
| BstNSI | RCATGY | 3 cut(s) | 448, 1001, 1420 |
| BstSCI | CCNGG | 4 cut(s) | 215, 479, 1151, 1536 |
| BstSFI | CTRYAG | 3 cut(s) | 417, 1261, 1338 |
| BstSLI | GKGCMC | 2 cut(s) | 175, 838 |
| BstV1I | GCAGC | 4 cut(s) | 403, 907, 1275, 1407 |
| BstV2I | GAAGAC | 1 cut(s) | 1669 |
| BstX2I | RGATCY | 1 cut(s) | 1914 |
| BstYI | RGATCY | 1 cut(s) | 1914 |
| BstZ17I | GTATAC | 1 cut(s) | 621 |
| BsuRI | GGCC | 2 cut(s) | 878, 1577 |
| BtgI | CCRYGG | 1 cut(s) | 879 |
| BtsCI | GGATG | 5 cut(s) | 354, 489, 545, 619, 1531 |
| BtsI | GCAGTG | 3 cut(s) | 426, 1254, 1796 |
| BtsIMutI | CAGTG | 6 cut(s) | 93, 253, 426, 496, 1254, 1796 |
| BveI | ACCTGC | 1 cut(s) | 728 |
| Cac8I | GCNNGC | 8 cut(s) | 75, 501, 770, 999, 1261, 1354, 1418, 1579 |
| CciI | TCATGA | 1 cut(s) | 1315 |
| Cfr10I | RCCGGY | 2 cut(s) | 499, 1577 |
| CseI | GACGC | 3 cut(s) | 330, 465, 1952 |
| Csp6I | GTAC | 2 cut(s) | 316, 1472 |
| CviQI | GTAC | 2 cut(s) | 316, 1472 |
| DpnI | GATC | 8 cut(s) | 132, 698, 801, 1148, 1365, 1409, 1769, 1916 |
| DpnII | GATC | 8 cut(s) | 130, 696, 799, 1146, 1363, 1407, 1767, 1914 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1673 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1673 |
| Eam1104I | CTCTTC | 2 cut(s) | 457, 1821 |
| EarI | CTCTTC | 2 cut(s) | 457, 1821 |
| EciI | GGCGGA | 1 cut(s) | 1663 |
| Eco130I | CCWWGG | 2 cut(s) | 879, 1369 |
| Eco57I | CTGAAG | 1 cut(s) | 801 |
| Eco72I | CACGTG | 1 cut(s) | 176 |
| EcoRII | CCWGG | 2 cut(s) | 215, 479 |
| EcoT14I | CCWWGG | 2 cut(s) | 879, 1369 |
| EcoT22I | ATGCAT | 1 cut(s) | 999 |
| ErhI | CCWWGG | 2 cut(s) | 879, 1369 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1661, 1693 |
| FaqI | GGGAC | 1 cut(s) | 114 |
| FauI | CCCGC | 1 cut(s) | 529 |
| FbaI | TGATCA | 3 cut(s) | 696, 799, 1146 |
| FblI | GTMKAC | 1 cut(s) | 620 |
| Fnu4HI | GCNGC | 4 cut(s) | 417, 896, 1264, 1421 |
| FokI | GGATG | 5 cut(s) | 361, 496, 552, 626, 1538 |
| Fsp4HI | GCNGC | 4 cut(s) | 417, 896, 1264, 1421 |
| FspBI | CTAG | 3 cut(s) | 906, 974, 1172 |
| GluI | GCNGC | 4 cut(s) | 417, 896, 1264, 1421 |
| GsaI | CCCAGC | 1 cut(s) | 602 |
| HaeIII | GGCC | 2 cut(s) | 878, 1577 |
| HapII | CCGG | 5 cut(s) | 500, 611, 1152, 1538, 1578 |
| HgaI | GACGC | 3 cut(s) | 330, 465, 1952 |
| Hin1I | GRCGYC | 1 cut(s) | 341 |
| HincII | GTYRAC | 1 cut(s) | 1543 |
| HindII | GTYRAC | 1 cut(s) | 1543 |
| HinfI | GANTC | 8 cut(s) | 25, 817, 841, 1051, 1402, 1702, 1723, 1817 |
| HpaII | CCGG | 5 cut(s) | 500, 611, 1152, 1538, 1578 |
| HphI | GGTGA | 6 cut(s) | 436, 997, 1141, 1697, 1895, 1952 |
| Hpy166II | GTNNAC | 4 cut(s) | 173, 318, 621, 1543 |
| Hpy188I | TCNGA | 8 cut(s) | 726, 789, 902, 1213, 1407, 1518, 1765, 1914 |
| Hpy8I | GTNNAC | 4 cut(s) | 173, 318, 621, 1543 |
| HpyAV | CCTTC | 5 cut(s) | 545, 1582, 1618, 1732, 1963 |
| HpyCH4III | ACNGT | 6 cut(s) | 41, 248, 386, 547, 1339, 1614 |
| HpyCH4IV | ACGT | 2 cut(s) | 175, 1806 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 533, 968, 1453 |
| HpySE526I | ACGT | 2 cut(s) | 175, 1806 |
| Hsp92I | GRCGYC | 1 cut(s) | 341 |
| Kpn2I | TCCGGA | 1 cut(s) | 610 |
| KroI | GCCGGC | 2 cut(s) | 499, 1577 |
| KroNI | GCCGGC | 2 cut(s) | 501, 1579 |
| Ksp22I | TGATCA | 3 cut(s) | 696, 799, 1146 |
| Kzo9I | GATC | 8 cut(s) | 130, 696, 799, 1146, 1363, 1407, 1767, 1914 |
| LmnI | GCTCC | 1 cut(s) | 659 |
| Lsp1109I | GCAGC | 4 cut(s) | 403, 907, 1275, 1407 |
| LweI | GCATC | 6 cut(s) | 108, 530, 1198, 1500, 1542, 1630 |
| MaeI | CTAG | 3 cut(s) | 906, 974, 1172 |
| MaeII | ACGT | 2 cut(s) | 175, 1806 |
| MaeIII | GTNAC | 2 cut(s) | 1234, 1703 |
| MalI | GATC | 8 cut(s) | 132, 698, 801, 1148, 1365, 1409, 1769, 1916 |
| MboI | GATC | 8 cut(s) | 130, 696, 799, 1146, 1363, 1407, 1767, 1914 |
| MboII | GAAGA | 9 cut(s) | 474, 826, 1189, 1395, 1669, 1672, 1675, 1838, 1909 |
| MflI | RGATCY | 1 cut(s) | 1914 |
| MhlI | GDGCHC | 4 cut(s) | 175, 745, 838, 1254 |
| MluCI | AATT | 8 cut(s) | 49, 663, 865, 1128, 1140, 1278, 1790, 1908 |
| MlyI | GAGTC | 2 cut(s) | 1711, 1826 |
| MmeI | TCCRAC | 1 cut(s) | 637 |
| Mph1103I | ATGCAT | 1 cut(s) | 999 |
| MroI | TCCGGA | 1 cut(s) | 610 |
| MroNI | GCCGGC | 2 cut(s) | 499, 1577 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1722 |
| MslI | CAYNNNNRTG | 3 cut(s) | 449, 1037, 1876 |
| MspI | CCGG | 5 cut(s) | 500, 611, 1152, 1538, 1578 |
| MspR9I | CCNGG | 4 cut(s) | 217, 481, 1153, 1538 |
| Mva1269I | GAATGC | 4 cut(s) | 198, 378, 866, 1292 |
| MvaI | CCWGG | 2 cut(s) | 217, 481 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 533, 968, 1453 |
| NaeI | GCCGGC | 2 cut(s) | 501, 1579 |
| NciI | CCSGG | 2 cut(s) | 1153, 1538 |
| NcoI | CCATGG | 1 cut(s) | 879 |
| NdeII | GATC | 8 cut(s) | 130, 696, 799, 1146, 1363, 1407, 1767, 1914 |
| NgoMIV | GCCGGC | 2 cut(s) | 499, 1577 |
| NmuCI | GTSAC | 2 cut(s) | 1234, 1703 |
| NsiI | ATGCAT | 1 cut(s) | 999 |
| NspI | RCATGY | 3 cut(s) | 448, 1001, 1420 |
| PaeI | GCATGC | 2 cut(s) | 1001, 1420 |
| PagI | TCATGA | 1 cut(s) | 1315 |
| PaqCI | CACCTGC | 1 cut(s) | 728 |
| PciI | ACATGT | 1 cut(s) | 444 |
| PctI | GAATGC | 4 cut(s) | 198, 378, 866, 1292 |
| PdiI | GCCGGC | 2 cut(s) | 501, 1579 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1722 |
| PfeI | GAWTC | 6 cut(s) | 25, 817, 841, 1051, 1402, 1723 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1436 |
| PfoI | TCCNGGA | 2 cut(s) | 215, 479 |
| PkrI | GCNGC | 4 cut(s) | 418, 897, 1265, 1422 |
| PleI | GAGTC | 2 cut(s) | 1710, 1825 |
| PmaCI | CACGTG | 1 cut(s) | 176 |
| PmlI | CACGTG | 1 cut(s) | 176 |
| PpsI | GAGTC | 2 cut(s) | 1710, 1825 |
| Ppu21I | YACGTR | 1 cut(s) | 176 |
| PscI | ACATGT | 1 cut(s) | 444 |
| Psp6I | CCWGG | 2 cut(s) | 215, 479 |
| PspCI | CACGTG | 1 cut(s) | 176 |
| PspFI | CCCAGC | 1 cut(s) | 598 |
| PspGI | CCWGG | 2 cut(s) | 215, 479 |
| PstI | CTGCAG | 2 cut(s) | 421, 1265 |
| PsuI | RGATCY | 1 cut(s) | 1914 |
| RsaI | GTAC | 2 cut(s) | 317, 1473 |
| RsaNI | GTAC | 2 cut(s) | 316, 1472 |
| RseI | CAYNNNNRTG | 3 cut(s) | 449, 1037, 1876 |
| SatI | GCNGC | 4 cut(s) | 417, 896, 1264, 1421 |
| Sau3AI | GATC | 8 cut(s) | 130, 696, 799, 1146, 1363, 1407, 1767, 1914 |
| SchI | GAGTC | 2 cut(s) | 1711, 1826 |
| ScrFI | CCNGG | 4 cut(s) | 217, 481, 1153, 1538 |
| SduI | GDGCHC | 4 cut(s) | 175, 745, 838, 1254 |
| SfaNI | GCATC | 6 cut(s) | 108, 530, 1198, 1500, 1542, 1630 |
| SfcI | CTRYAG | 3 cut(s) | 417, 1261, 1338 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 449, 1037, 1876 |
| SmlI | CTYRAG | 7 cut(s) | 335, 638, 1067, 1303, 1834, 1889, 1927 |
| SmoI | CTYRAG | 7 cut(s) | 335, 638, 1067, 1303, 1834, 1889, 1927 |
| SphI | GCATGC | 2 cut(s) | 1001, 1420 |
| Sse9I | AATT | 8 cut(s) | 49, 663, 865, 1128, 1140, 1278, 1790, 1908 |
| SsiI | CCGC | 3 cut(s) | 34, 536, 1648 |
| SspI | AATATT | 1 cut(s) | 1435 |
| SspMI | CTAG | 3 cut(s) | 906, 974, 1172 |
| StyD4I | CCNGG | 4 cut(s) | 215, 479, 1151, 1536 |
| StyI | CCWWGG | 2 cut(s) | 879, 1369 |
| TaaI | ACNGT | 6 cut(s) | 41, 248, 386, 547, 1339, 1614 |
| TaiI | ACGT | 2 cut(s) | 178, 1809 |
| TaqI | TCGA | 6 cut(s) | 326, 667, 941, 1049, 1375, 1410 |
| TasI | AATT | 8 cut(s) | 49, 663, 865, 1128, 1140, 1278, 1790, 1908 |
| TatI | WGTACW | 1 cut(s) | 315 |
| TfiI | GAWTC | 6 cut(s) | 25, 817, 841, 1051, 1402, 1723 |
| TscAI | CASTG | 6 cut(s) | 93, 253, 426, 496, 1254, 1803 |
| TseFI | GTSAC | 2 cut(s) | 1234, 1703 |
| TseI | GCWGC | 4 cut(s) | 416, 895, 1263, 1420 |
| Tsp45I | GTSAC | 2 cut(s) | 1234, 1703 |
| TspDTI | ATGAA | 7 cut(s) | 17, 423, 1122, 1715, 1769, 1832, 1945 |
| TspGWI | ACGGA | 1 cut(s) | 1339 |
| TspRI | CASTG | 6 cut(s) | 93, 253, 426, 496, 1254, 1803 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1436 |
| VneI | GTGCAC | 1 cut(s) | 171 |
| XapI | RAATTY | 2 cut(s) | 49, 1790 |
| XceI | RCATGY | 3 cut(s) | 448, 1001, 1420 |
| XmiI | GTMKAC | 1 cut(s) | 620 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1722 |
| XspI | CTAG | 3 cut(s) | 906, 974, 1172 |
| Zsp2I | ATGCAT | 1 cut(s) | 999 |