Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0011061

Physical Location & Seq

Genomic Coordinates Reverse (-)

66313699 .. 66314250

Gene Structure 552 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG447700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

ATGCTTCTGAGATTGGATGGTGATAACGCGGTCAACTATGTGATGCTGTCAAACCTCTATGCAGAGGCCGGCTACTGGAAGGAGTGTGAGAGAATAAGAAAACTGTCTAAGAGGAAGGGGTTAAAAAAAGATGCAGGACGGAGTTGGGTAGAGATTGACAAGGAGGTCTACTTCTTCTACAATGGAGATGAGACTCATCCACTTACAGAAAAGATTCATCAAGTATTGAAGGAAATGGAGAACAGAATAAAATCTGAGATCGGCTACGTTCATGGGGTGAGATTTGCACTGCATGACGTAGAAGAGGAGTCAAAAGAAGAGAGCTTGAGAGTTCATAGTGAAAAACTGGCAATCGGGTTGGCATTGGTATGTGGTGAGCTTGAGAAAGGGAATACAACAATTCGGATCTTCAAGAACTTGAGGGTATGTGGTGATTGCCATGCCTTCATTAAAGGCTTGTCAAAGGTTTTGAAGGTGGTAATTCTTGTGAGAGATGCTAATAGGTTTCACAAGTTTGAGGACGGCGTGTGTTCTTGTGGAGATTATTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF167 DYW_deaminase PPR PPR_2 Pkinase

Protein Analysis

183

Amino Acids

21.14

Weight (kDa)

7.63

Isoelectric Point (pI)

29.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
E_motif	PF20431	2 - 51	1.8e-14	E motif
DYW_deaminase	PF14432	88 - 183	6.5e-34	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0011061)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G15130
fragaria_vesca	FvH4_2g36310
malus_domestica	MD08G1120300.v1.1 MD08G1120600.v1.1 MD15G1099700.v1.1
prunus_persica	Prupe.1G454500_v2.0.a1
pyrus_communis	pycom08g10070 pycom08g10090 pycom15g09170
rosa_chinensis	RchiOBHm_Chr6g0305571
rosa_laevigata	RLG00000010876
rosa_multiflora	Rmu_co8434531.1_g000001 Rmu_sc0000841.1_g000001 Rmu_sc0001153.1_g000004 Rmu_sc0033568.1_g000001
rosa_rugosa	Rorug06G0341800
rosa_samantha	Rh6AG453800 Rh6BG447700 Rh6DG454100
rosa_wichuraiana	Rw6G039550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	164
AccI	GTMKAC	1 cut(s)	168
AccII	CGCG	1 cut(s)	29
AciI	CCGC	1 cut(s)	29
AclWI	GGATC	1 cut(s)	413
AfiI	CCNNNNNNNGG	1 cut(s)	75
AgsI	TTSAA	3 cut(s)	229, 412, 472
AluBI	AGCT	2 cut(s)	324, 379
AluI	AGCT	2 cut(s)	324, 379
Alw26I	GTCTC	1 cut(s)	185
AlwI	GGATC	1 cut(s)	413
AoxI	GGCC	1 cut(s)	66
Asp700I	GAANNNNTTC	1 cut(s)	213
AsuHPI	GGTGA	4 cut(s)	32, 289, 386, 443
BccI	CCATC	1 cut(s)	11
BceAI	ACGGC	1 cut(s)	538
BcoDI	GTCTC	1 cut(s)	185
BmsI	GCATC	3 cut(s)	33, 121, 484
BpuEI	CTTGAG	3 cut(s)	346, 401, 439
Bsc4I	CCNNNNNNNGG	1 cut(s)	75
Bse118I	RCCGGY	1 cut(s)	68
Bse1I	ACTGG	2 cut(s)	80, 351
BseGI	GGATG	2 cut(s)	22, 196
BseLI	CCNNNNNNNGG	1 cut(s)	75
BseMII	CTCAG	1 cut(s)	246
BseNI	ACTGG	2 cut(s)	80, 351
BseRI	GAGGAG	1 cut(s)	320
Bsh1236I	CGCG	1 cut(s)	29
BshFI	GGCC	1 cut(s)	68
BsiSI	CCGG	1 cut(s)	69
BslI	CCNNNNNNNGG	1 cut(s)	75
BsmAI	GTCTC	1 cut(s)	185
BsnI	GGCC	1 cut(s)	68
Bsp143I	GATC	2 cut(s)	258, 405
BspACI	CCGC	1 cut(s)	29
BspANI	GGCC	1 cut(s)	68
BspCNI	CTCAG	1 cut(s)	247
BspFNI	CGCG	1 cut(s)	29
BspPI	GGATC	1 cut(s)	413
BsrFI	RCCGGY	1 cut(s)	68
BsrI	ACTGG	2 cut(s)	80, 351
BssAI	RCCGGY	1 cut(s)	68
BssMI	GATC	2 cut(s)	258, 405
Bst4CI	ACNGT	1 cut(s)	105
Bst6I	CTCTTC	2 cut(s)	297, 312
BstC8I	GCNNGC	1 cut(s)	70
BstDEI	CTNAG	3 cut(s)	8, 108, 255
BstF5I	GGATG	2 cut(s)	22, 196
BstFNI	CGCG	1 cut(s)	29
BstKTI	GATC	2 cut(s)	261, 408
BstMAI	GTCTC	1 cut(s)	185
BstMBI	GATC	2 cut(s)	258, 405
BstUI	CGCG	1 cut(s)	29
BstX2I	RGATCY	1 cut(s)	405
BstYI	RGATCY	1 cut(s)	405
BsuRI	GGCC	1 cut(s)	68
BtsCI	GGATG	2 cut(s)	22, 196
BtsI	GCAGTG	1 cut(s)	287
BtsIMutI	CAGTG	1 cut(s)	287
Cac8I	GCNNGC	1 cut(s)	70
Cfr10I	RCCGGY	1 cut(s)	68
CviAII	CATG	3 cut(s)	272, 293, 440
CviJI	RGCY	6 cut(s)	68, 72, 264, 324, 379, 456
CviKI_1	RGCY	6 cut(s)	68, 72, 264, 324, 379, 456
DdeI	CTNAG	3 cut(s)	8, 108, 255
DpnI	GATC	2 cut(s)	260, 407
DpnII	GATC	2 cut(s)	258, 405
DrdI	GACNNNNNNGTC	1 cut(s)	164
DseDI	GACNNNNNNGTC	1 cut(s)	164
Eam1104I	CTCTTC	2 cut(s)	297, 312
EarI	CTCTTC	2 cut(s)	297, 312
FaeI	CATG	3 cut(s)	275, 296, 443
FaiI	YATR	8 cut(s)	39, 60, 273, 294, 336, 370, 427, 441
FatI	CATG	3 cut(s)	271, 292, 439
FblI	GTMKAC	1 cut(s)	168
FokI	GGATG	2 cut(s)	29, 183
HaeIII	GGCC	1 cut(s)	68
HapII	CCGG	1 cut(s)	69
Hin1II	CATG	3 cut(s)	275, 296, 443
HincII	GTYRAC	1 cut(s)	34
HindII	GTYRAC	1 cut(s)	34
HinfI	GANTC	3 cut(s)	193, 214, 308
HpaII	CCGG	1 cut(s)	69
HphI	GGTGA	4 cut(s)	32, 289, 386, 443
Hpy166II	GTNNAC	2 cut(s)	34, 169
Hpy188I	TCNGA	3 cut(s)	9, 256, 405
Hpy188III	TCNNGA	1 cut(s)	412
Hpy8I	GTNNAC	2 cut(s)	34, 169
HpyAV	CCTTC	5 cut(s)	73, 109, 223, 454, 466
HpyCH4III	ACNGT	1 cut(s)	105
HpyCH4IV	ACGT	2 cut(s)	267, 297
HpyCH4V	TGCA	4 cut(s)	62, 134, 287, 292
HpyF3I	CTNAG	3 cut(s)	8, 108, 255
HpySE526I	ACGT	2 cut(s)	267, 297
Hsp92II	CATG	3 cut(s)	275, 296, 443
KroI	GCCGGC	1 cut(s)	68
KroNI	GCCGGC	1 cut(s)	70
Kzo9I	GATC	2 cut(s)	258, 405
LpnPI	CCDG	4 cut(s)	61, 82, 120, 332
LweI	GCATC	3 cut(s)	33, 121, 484
MaeII	ACGT	2 cut(s)	267, 297
MalI	GATC	2 cut(s)	260, 407
MboI	GATC	2 cut(s)	258, 405
MboII	GAAGA	4 cut(s)	166, 314, 329, 400
MflI	RGATCY	1 cut(s)	405
MluCI	AATT	2 cut(s)	399, 480
MlyI	GAGTC	2 cut(s)	187, 317
MnlI	CCTC	7 cut(s)	58, 65, 105, 157, 298, 414, 511
MroNI	GCCGGC	1 cut(s)	68
MroXI	GAANNNNTTC	1 cut(s)	213
MseI	TTAA	2 cut(s)	122, 450
MslI	CAYNNNNRTG	1 cut(s)	367
MspI	CCGG	1 cut(s)	69
MvnI	CGCG	1 cut(s)	29
NaeI	GCCGGC	1 cut(s)	70
NdeII	GATC	2 cut(s)	258, 405
NgoMIV	GCCGGC	1 cut(s)	68
NlaIII	CATG	3 cut(s)	275, 296, 443
PdiI	GCCGGC	1 cut(s)	70
PdmI	GAANNNNTTC	1 cut(s)	213
PfeI	GAWTC	1 cut(s)	214
PleI	GAGTC	2 cut(s)	187, 316
PpsI	GAGTC	2 cut(s)	187, 316
PsuI	RGATCY	1 cut(s)	405
RseI	CAYNNNNRTG	1 cut(s)	367
SaqAI	TTAA	2 cut(s)	122, 450
Sau3AI	GATC	2 cut(s)	258, 405
SchI	GAGTC	2 cut(s)	187, 317
SetI	ASST	9 cut(s)	57, 168, 270, 300, 326, 381, 468, 477, 506
SfaNI	GCATC	3 cut(s)	33, 121, 484
SmiMI	CAYNNNNRTG	1 cut(s)	367
SmlI	CTYRAG	3 cut(s)	325, 380, 418
SmoI	CTYRAG	3 cut(s)	325, 380, 418
Sse9I	AATT	2 cut(s)	399, 480
SsiI	CCGC	1 cut(s)	29
TaaI	ACNGT	1 cut(s)	105
TaiI	ACGT	2 cut(s)	270, 300
TasI	AATT	2 cut(s)	399, 480
TfiI	GAWTC	1 cut(s)	214
Tru1I	TTAA	2 cut(s)	122, 450
Tru9I	TTAA	2 cut(s)	122, 450
TscAI	CASTG	1 cut(s)	294
TspDTI	ATGAA	4 cut(s)	206, 260, 323, 436
TspGWI	ACGGA	1 cut(s)	154
TspRI	CASTG	1 cut(s)	294
XmiI	GTMKAC	1 cut(s)	168
XmnI	GAANNNNTTC	1 cut(s)	213

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.