Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0012895

Physical Location & Seq

Genomic Coordinates Reverse (-)

11084312 .. 11086087

Gene Structure 1776 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1121000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGTCGGGAAAGGAAACAAACCCGACGTTTAGCAAGTCAACTGGCCTGCCTCGGAAGCGTTTCTACAGAGCAAGAGCACACAGCAACCCTTTGAGTGACTCCCACTTTCCAGTGCCTGTCTCCCCGCGTCATGTAGATTATTCTGTTCATTACCCACAATACTTCCCCTCGTCCGATCAAGTTGATAGCTGTAAGAAGATCCAGTTTGCAGATATCGGTTGTGGTTTTGGGGGGCTTCTGATAAGTCTGTCAACCCTTTTCCCTGAGACTTTGATGATCGGGATGGAGCTTAGGGACAAAGTGACAGAGTATGTCAAAGAAAGGATCTTGGCTTTAAGGGTGACAAATCCTGGTCAATACCAAAATATCTCAGTGGTTCGGACTAATTCCATGAAATACATTCCAAATTACTTTGAGAAAGGACAGCTTTCGAAGATGTTTTTTCTCTTTCCGGATCCTCACTTCAAAGAGAAAAATCATCGTCGTAGAGTGATCAGTCCATTCTTGCTGGATGAGTATGCTTACGTTCTAGAAGTTGGTGGGATCATATACACAATTACGGATGTTGAGGAGCTTGGAGACTGGATGAAGACTTGCTTGGAGAATCACCCCATGTTTGAAGCTCTCACAGACAAAGAACTCAAAGCAGATCCAGTCACGAAGCTCTTGAGTTCTGCAACCGAGGAAGGACAGAAGGTTGACAGGAATGGAGGACAGACTTTCCGAGCGGTTTACAGACGAAGTGCACCATCTCTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001510 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0008168 GO:0008173 GO:0008175 GO:0008176 GO:0008757 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016423 GO:0016740 GO:0016741 GO:0030488 GO:0032259 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0034708 GO:0036265 GO:0043170 GO:0043412 GO:0043414 GO:0043527 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0106004 GO:0140098 GO:0140101 GO:1901360 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_4

Protein Analysis

253

Amino Acids

28.83

Weight (kDa)

8.82

Isoelectric Point (pI)

43.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltransf_4	PF02390	67 - 242	1.7e-50	Putative methyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0012895)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24840
fragaria_vesca	FvH4_2g36340
malus_domestica	MD08G1121000.v1.1 MD15G1100000.v1.1
prunus_persica	Prupe.1G454800_v2.0.a1
pyrus_communis	pycom08g10110 pycom15g09200
rosa_chinensis	RchiOBHm_Chr6g0305541
rosa_laevigata	RLG00000010878
rosa_multiflora	Rmu_co8330221.1_g000001 Rmu_sc0000841.1_g000004
rosa_roxburghii	Rroxscaffold_7G00162600
rosa_rugosa	Rorug06G0341500
rosa_samantha	Rh6AG453500 Rh6BG448100 Rh6CG467300 Rh6DG453900
rosa_wichuraiana	Rw6G039520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	728
AccII	CGCG	1 cut(s)	127
AccIII	TCCGGA	1 cut(s)	451
AciI	CCGC	2 cut(s)	125, 728
AclWI	GGATC	6 cut(s)	193, 332, 449, 462, 551, 644
AgsI	TTSAA	2 cut(s)	466, 620
AjnI	CCWGG	1 cut(s)	349
AjuI	GAANNNNNNNTTGG	2 cut(s)	581, 613
AluBI	AGCT	6 cut(s)	189, 289, 427, 574, 623, 664
AluI	AGCT	6 cut(s)	189, 289, 427, 574, 623, 664
Alw21I	GWGCWC	2 cut(s)	79, 748
Alw26I	GTCTC	3 cut(s)	124, 260, 573
Alw44I	GTGCAC	1 cut(s)	744
AlwI	GGATC	6 cut(s)	193, 332, 449, 462, 551, 644
AlwNI	CAGNNNCTG	1 cut(s)	116
Aor13HI	TCCGGA	1 cut(s)	451
AoxI	GGCC	1 cut(s)	43
ApaLI	GTGCAC	1 cut(s)	744
Asp700I	GAANNNNTTC	1 cut(s)	59
AsuHPI	GGTGA	2 cut(s)	352, 599
AsuII	TTCGAA	1 cut(s)	431
BaeGI	GKGCMC	1 cut(s)	748
BamHI	GGATCC	1 cut(s)	454
BarI	GAAGNNNNNNTAC	2 cut(s)	47, 79
BbsI	GAAGAC	1 cut(s)	596
Bbv12I	GWGCWC	2 cut(s)	79, 748
BccI	CCATC	2 cut(s)	277, 757
BciT130I	CCWGG	1 cut(s)	351
BclI	TGATCA	1 cut(s)	492
BcoDI	GTCTC	3 cut(s)	124, 260, 573
BfaI	CTAG	1 cut(s)	530
BfmI	CTRYAG	1 cut(s)	64
Bme1390I	CCNGG	1 cut(s)	351
BmiI	GGNNCC	1 cut(s)	456
BmrFI	CCNGG	1 cut(s)	351
BpiI	GAAGAC	1 cut(s)	596
Bpu10I	CCTNAGC	1 cut(s)	290
Bpu14I	TTCGAA	1 cut(s)	431
BpuEI	CTTGAG	1 cut(s)	688
BsaJI	CCNNGG	2 cut(s)	50, 681
BsaWI	WCCGGW	1 cut(s)	451
Bse1I	ACTGG	5 cut(s)	46, 110, 202, 587, 653
BseAI	TCCGGA	1 cut(s)	451
BseBI	CCWGG	1 cut(s)	351
BseDI	CCNNGG	2 cut(s)	50, 681
BseGI	GGATG	4 cut(s)	288, 517, 568, 591
BseMII	CTCAG	2 cut(s)	255, 384
BseNI	ACTGG	5 cut(s)	46, 110, 202, 587, 653
BseRI	GAGGAG	1 cut(s)	584
BseSI	GKGCMC	1 cut(s)	748
Bsh1236I	CGCG	1 cut(s)	127
BshFI	GGCC	1 cut(s)	45
BsiHKAI	GWGCWC	2 cut(s)	79, 748
BsiSI	CCGG	1 cut(s)	452
BslFI	GGGAC	1 cut(s)	308
BsmAI	GTCTC	3 cut(s)	124, 260, 573
BsmFI	GGGAC	1 cut(s)	308
BsnI	GGCC	1 cut(s)	45
Bsp119I	TTCGAA	1 cut(s)	431
Bsp1286I	GDGCHC	2 cut(s)	79, 748
Bsp13I	TCCGGA	1 cut(s)	451
Bsp143I	GATC	8 cut(s)	175, 198, 276, 324, 454, 492, 543, 649
BspACI	CCGC	2 cut(s)	125, 728
BspANI	GGCC	1 cut(s)	45
BspCNI	CTCAG	2 cut(s)	256, 383
BspEI	TCCGGA	1 cut(s)	451
BspFNI	CGCG	1 cut(s)	127
BspLI	GGNNCC	1 cut(s)	456
BspPI	GGATC	6 cut(s)	193, 332, 449, 462, 551, 644
BspT104I	TTCGAA	1 cut(s)	431
BsrBI	CCGCTC	1 cut(s)	728
BsrI	ACTGG	5 cut(s)	46, 110, 202, 587, 653
BssECI	CCNNGG	2 cut(s)	50, 681
BssMI	GATC	8 cut(s)	175, 198, 276, 324, 454, 492, 543, 649
Bst2UI	CCWGG	1 cut(s)	351
BstBI	TTCGAA	1 cut(s)	431
BstC8I	GCNNGC	1 cut(s)	47
BstDEI	CTNAG	3 cut(s)	264, 290, 370
BstF5I	GGATG	4 cut(s)	288, 517, 568, 591
BstFNI	CGCG	1 cut(s)	127
BstKTI	GATC	8 cut(s)	178, 201, 279, 327, 457, 495, 546, 652
BstMAI	GTCTC	3 cut(s)	124, 260, 573
BstMBI	GATC	8 cut(s)	175, 198, 276, 324, 454, 492, 543, 649
BstMWI	GCNNNNNNNGC	1 cut(s)	55
BstNI	CCWGG	1 cut(s)	351
BstSCI	CCNGG	1 cut(s)	349
BstSFI	CTRYAG	1 cut(s)	64
BstSLI	GKGCMC	1 cut(s)	748
BstUI	CGCG	1 cut(s)	127
BstV2I	GAAGAC	1 cut(s)	596
BstX2I	RGATCY	4 cut(s)	198, 324, 454, 649
BstYI	RGATCY	4 cut(s)	198, 324, 454, 649
BsuRI	GGCC	1 cut(s)	45
BtsCI	GGATG	4 cut(s)	288, 517, 568, 591
BtsIMutI	CAGTG	2 cut(s)	117, 378
Cac8I	GCNNGC	1 cut(s)	47
CaiI	CAGNNNCTG	1 cut(s)	116
CseI	GACGC	1 cut(s)	116
CviAII	CATG	3 cut(s)	131, 391, 613
CviJI	RGCY	9 cut(s)	45, 189, 235, 289, 332, 427, 574, 623, 664
CviKI_1	RGCY	9 cut(s)	45, 189, 235, 289, 332, 427, 574, 623, 664
DdeI	CTNAG	3 cut(s)	264, 290, 370
DpnI	GATC	8 cut(s)	177, 200, 278, 326, 456, 494, 545, 651
DpnII	GATC	8 cut(s)	175, 198, 276, 324, 454, 492, 543, 649
Eco32I	GATATC	1 cut(s)	214
EcoRII	CCWGG	1 cut(s)	349
EcoRV	GATATC	1 cut(s)	214
FaeI	CATG	3 cut(s)	134, 394, 616
FaiI	YATR	8 cut(s)	132, 312, 392, 519, 548, 550, 614, 757
FalI	AAGNNNNNCTT	4 cut(s)	411, 443, 581, 613
FaqI	GGGAC	1 cut(s)	308
FatI	CATG	3 cut(s)	130, 390, 612
FauI	CCCGC	1 cut(s)	132
FbaI	TGATCA	1 cut(s)	492
FokI	GGATG	4 cut(s)	295, 524, 575, 598
FspBI	CTAG	1 cut(s)	530
HaeIII	GGCC	1 cut(s)	45
HapII	CCGG	1 cut(s)	452
HgaI	GACGC	1 cut(s)	116
Hin1II	CATG	3 cut(s)	134, 394, 616
HincII	GTYRAC	3 cut(s)	39, 252, 700
HindII	GTYRAC	3 cut(s)	39, 252, 700
HinfI	GANTC	2 cut(s)	98, 604
HpaII	CCGG	1 cut(s)	452
HphI	GGTGA	2 cut(s)	352, 599
Hpy166II	GTNNAC	5 cut(s)	39, 252, 700, 733, 746
Hpy188I	TCNGA	5 cut(s)	54, 175, 240, 381, 725
Hpy188III	TCNNGA	6 cut(s)	6, 280, 452, 530, 658, 667
Hpy8I	GTNNAC	5 cut(s)	39, 252, 700, 733, 746
Hpy99I	CGWCG	2 cut(s)	28, 486
HpyAV	CCTTC	2 cut(s)	680, 688
HpyCH4IV	ACGT	2 cut(s)	26, 525
HpyCH4V	TGCA	3 cut(s)	209, 677, 746
HpyF10VI	GCNNNNNNNGC	1 cut(s)	55
HpyF3I	CTNAG	3 cut(s)	264, 290, 370
HpySE526I	ACGT	2 cut(s)	26, 525
Hsp92II	CATG	3 cut(s)	134, 394, 616
Kpn2I	TCCGGA	1 cut(s)	451
Ksp22I	TGATCA	1 cut(s)	492
Kzo9I	GATC	8 cut(s)	175, 198, 276, 324, 454, 492, 543, 649
LmnI	GCTCC	2 cut(s)	286, 571
MaeI	CTAG	1 cut(s)	530
MaeII	ACGT	2 cut(s)	26, 525
MaeIII	GTNAC	4 cut(s)	95, 301, 340, 655
MalI	GATC	8 cut(s)	177, 200, 278, 326, 456, 494, 545, 651
MbiI	CCGCTC	1 cut(s)	728
MboI	GATC	8 cut(s)	175, 198, 276, 324, 454, 492, 543, 649
MboII	GAAGA	3 cut(s)	208, 445, 601
MflI	RGATCY	4 cut(s)	198, 324, 454, 649
MhlI	GDGCHC	2 cut(s)	79, 748
MluCI	AATT	3 cut(s)	385, 406, 555
MlyI	GAGTC	1 cut(s)	92
MnlI	CCTC	6 cut(s)	60, 178, 468, 562, 676, 704
MroI	TCCGGA	1 cut(s)	451
MroXI	GAANNNNTTC	1 cut(s)	59
MseI	TTAA	1 cut(s)	335
MslI	CAYNNNNRTG	1 cut(s)	754
MspI	CCGG	1 cut(s)	452
MspR9I	CCNGG	1 cut(s)	351
MvaI	CCWGG	1 cut(s)	351
MvnI	CGCG	1 cut(s)	127
MwoI	GCNNNNNNNGC	1 cut(s)	55
NdeII	GATC	8 cut(s)	175, 198, 276, 324, 454, 492, 543, 649
NlaIII	CATG	3 cut(s)	134, 394, 616
NlaIV	GGNNCC	1 cut(s)	456
NmuCI	GTSAC	4 cut(s)	95, 301, 340, 655
NspV	TTCGAA	1 cut(s)	431
PdmI	GAANNNNTTC	1 cut(s)	59
PfeI	GAWTC	1 cut(s)	604
PleI	GAGTC	1 cut(s)	92
PpsI	GAGTC	1 cut(s)	92
Psp6I	CCWGG	1 cut(s)	349
PspGI	CCWGG	1 cut(s)	349
PspN4I	GGNNCC	1 cut(s)	456
PstNI	CAGNNNCTG	1 cut(s)	116
PsuI	RGATCY	4 cut(s)	198, 324, 454, 649
RseI	CAYNNNNRTG	1 cut(s)	754
SaqAI	TTAA	1 cut(s)	335
Sau3AI	GATC	8 cut(s)	175, 198, 276, 324, 454, 492, 543, 649
SchI	GAGTC	1 cut(s)	92
ScrFI	CCNGG	1 cut(s)	351
SduI	GDGCHC	2 cut(s)	79, 748
SetI	ASST	9 cut(s)	29, 191, 291, 429, 528, 576, 625, 666, 699
SfcI	CTRYAG	1 cut(s)	64
SfuI	TTCGAA	1 cut(s)	431
SmiMI	CAYNNNNRTG	1 cut(s)	754
SmlI	CTYRAG	1 cut(s)	667
SmoI	CTYRAG	1 cut(s)	667
Sse9I	AATT	3 cut(s)	385, 406, 555
SsiI	CCGC	2 cut(s)	125, 728
SspMI	CTAG	1 cut(s)	530
StyD4I	CCNGG	1 cut(s)	349
TaiI	ACGT	2 cut(s)	29, 528
TaqI	TCGA	1 cut(s)	431
TasI	AATT	3 cut(s)	385, 406, 555
TfiI	GAWTC	1 cut(s)	604
Tru1I	TTAA	1 cut(s)	335
Tru9I	TTAA	1 cut(s)	335
TscAI	CASTG	2 cut(s)	117, 378
TseFI	GTSAC	4 cut(s)	95, 301, 340, 655
Tsp45I	GTSAC	4 cut(s)	95, 301, 340, 655
TspDTI	ATGAA	3 cut(s)	137, 407, 602
TspGWI	ACGGA	1 cut(s)	575
TspRI	CASTG	2 cut(s)	117, 378
VneI	GTGCAC	1 cut(s)	744
XbaI	TCTAGA	1 cut(s)	529
XmnI	GAANNNNTTC	1 cut(s)	59
XspI	CTAG	1 cut(s)	530

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.