Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000841.1

Orthogroup ID

OG0012895

Physical Location & Seq

Genomic Coordinates Reverse (-)

5481 .. 10865

Gene Structure 5385 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000841.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1107 bp

atgatttcaaagaattatcggattgatgtaaatgcaggacgtatcacaaggtttcatgagctcattggcgccatgaacgtagctgaaaagcacgataatatccttgtgaagaactataatgctagacccgtgggaactaagcctattccggagtctaactatagaaatcgccaaaagaggcatgcacggaaccgtggaggtcaacgtgtgaagagagagggaggcggagcctccgaccatggtggtaacgccaccaagaggataggcggcgaggtctcaaaacaccttcggaaccaatttccggcgtcaactccaatacataagacacccaagtttgctgaaaaagtcatgttggaaaacaaagtaaactcaactcatagcaagtccactggtctgcctcggaagcgtttctacagagcaagagcacacagtaacccactgagtgactcccactttccagtacctgtcgcccccagtcatgtggattattctcttcattacccgcagctctttccctcatctgatgaagctggtagttgcaaaaagatccagtttgcagatattggctgtggttttggggggcttctgataagcctttcaactcttttccctagcactctgatgattggaatggagcttagggataaggtgacagagtatgtcaaggaaaggattttggctttaagggtgacaaatccgggtcaataccagaatatctcagtggttcgcactaattccatgaagtacatcccaaattactttgagaaagcacagctttcaaagatgtttttcctgttcccggatcctcacttcaaagagaaaaatcaccggcgtagggtgatcagtccattcttgctggatgagtatgcttatgctctagaagttggtggcattatatacacaataacagatgtcgaagaacttggagactggatgaaggcttgtttagaaaatcaccctatgtttgaagctctcacaagtgaagaggtcgaagcagatccagttacgaagctcttgagttctgcaactgaggaaggacagaaggtggacagaaacgggggacagactttccgagcaatttacagacgcattgctccatccctatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001510 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0008168 GO:0008173 GO:0008175 GO:0008176 GO:0008757 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016423 GO:0016740 GO:0016741 GO:0030488 GO:0032259 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0034708 GO:0036265 GO:0043170 GO:0043412 GO:0043414 GO:0043527 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0106004 GO:0140098 GO:0140101 GO:1901360 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_4

Protein Analysis

368

Amino Acids

41.6

Weight (kDa)

9.65

Isoelectric Point (pI)

43.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012895)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24840
fragaria_vesca	FvH4_2g36340
malus_domestica	MD08G1121000.v1.1 MD15G1100000.v1.1
prunus_persica	Prupe.1G454800_v2.0.a1
pyrus_communis	pycom08g10110 pycom15g09200
rosa_chinensis	RchiOBHm_Chr6g0305541
rosa_laevigata	RLG00000010878
rosa_multiflora	Rmu_co8330221.1_g000001 Rmu_sc0000841.1_g000004
rosa_roxburghii	Rroxscaffold_7G00162600
rosa_rugosa	Rorug06G0341500
rosa_samantha	Rh6AG453500 Rh6BG448100 Rh6CG467300 Rh6DG453900
rosa_wichuraiana	Rw6G039520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	68
AccIII	TCCGGA	1 cut(s)	148
AciI	CCGC	3 cut(s)	225, 267, 503
AclWI	GGATC	4 cut(s)	541, 797, 810, 992
AcyI	GRCGYC	2 cut(s)	69, 305
AdeI	CACNNNGTG	1 cut(s)	443
AfaI	GTAC	2 cut(s)	462, 746
AfiI	CCNNNNNNNGG	4 cut(s)	258, 301, 799, 835
AflIII	ACRYGT	1 cut(s)	205
AgsI	TTSAA	5 cut(s)	9, 600, 780, 814, 968
AluBI	AGCT	8 cut(s)	61, 83, 508, 530, 637, 775, 971, 1012
AluI	AGCT	8 cut(s)	61, 83, 508, 530, 637, 775, 971, 1012
Alw21I	GWGCWC	2 cut(s)	63, 427
Alw26I	GTCTC	2 cut(s)	280, 921
AlwI	GGATC	4 cut(s)	541, 797, 810, 992
AlwNI	CAGNNNCTG	1 cut(s)	464
Aor13HI	TCCGGA	1 cut(s)	148
ApeKI	GCWGC	1 cut(s)	505
Asp700I	GAANNNNTTC	1 cut(s)	407
AspLEI	GCGC	1 cut(s)	71
AsuC2I	CCSGG	2 cut(s)	699, 800
AsuHPI	GGTGA	5 cut(s)	661, 700, 818, 850, 947
BamHI	GGATCC	1 cut(s)	802
BanI	GGYRCC	1 cut(s)	68
BanII	GRGCYC	1 cut(s)	63
BarI	GAAGNNNNNNTAC	2 cut(s)	395, 427
Bbv12I	GWGCWC	2 cut(s)	63, 427
BbvI	GCAGC	1 cut(s)	517
BccI	CCATC	1 cut(s)	1105
BclI	TGATCA	1 cut(s)	840
BcnI	CCSGG	2 cut(s)	699, 800
BcoDI	GTCTC	2 cut(s)	280, 921
BfaI	CTAG	3 cut(s)	123, 612, 878
BfmI	CTRYAG	2 cut(s)	160, 412
BfoI	RGCGCY	1 cut(s)	72
BisI	GCNGC	2 cut(s)	268, 506
BlsI	GCNGC	2 cut(s)	269, 507
Bme1390I	CCNGG	2 cut(s)	699, 800
BmiI	GGNNCC	5 cut(s)	70, 191, 229, 293, 804
BmrFI	CCNGG	2 cut(s)	699, 800
BmrI	ACTGGG	1 cut(s)	468
BmuI	ACTGGG	1 cut(s)	468
Bpu10I	CCTNAGC	1 cut(s)	638
BpuEI	CTTGAG	1 cut(s)	1036
BpuMI	CCSGG	2 cut(s)	699, 800
BsaHI	GRCGYC	2 cut(s)	69, 305
BsaI	GGTCTC	1 cut(s)	280
BsaJI	CCNNGG	4 cut(s)	129, 193, 238, 398
BsaWI	WCCGGW	1 cut(s)	148
Bsc4I	CCNNNNNNNGG	4 cut(s)	258, 301, 799, 835
Bse118I	RCCGGY	1 cut(s)	828
Bse1I	ACTGG	6 cut(s)	394, 458, 474, 550, 935, 1001
Bse3DI	GCAATG	1 cut(s)	1089
BseAI	TCCGGA	1 cut(s)	148
BseDI	CCNNGG	4 cut(s)	129, 193, 238, 398
BseGI	GGATG	4 cut(s)	747, 865, 939, 1097
BseLI	CCNNNNNNNGG	4 cut(s)	258, 301, 799, 835
BseMI	GCAATG	1 cut(s)	1089
BseMII	CTCAG	3 cut(s)	431, 732, 1020
BseNI	ACTGG	6 cut(s)	394, 458, 474, 550, 935, 1001
BseXI	GCAGC	1 cut(s)	517
BshNI	GGYRCC	1 cut(s)	68
BsiHKAI	GWGCWC	2 cut(s)	63, 427
BsiSI	CCGG	5 cut(s)	149, 302, 698, 800, 829
BslFI	GGGAC	1 cut(s)	1074
BslI	CCNNNNNNNGG	4 cut(s)	258, 301, 799, 835
BsmAI	GTCTC	2 cut(s)	280, 921
BsmFI	GGGAC	1 cut(s)	1074
Bso31I	GGTCTC	1 cut(s)	280
Bsp1286I	GDGCHC	2 cut(s)	63, 427
Bsp13I	TCCGGA	1 cut(s)	148
Bsp143I	GATC	4 cut(s)	546, 802, 840, 997
Bsp19I	CCATGG	1 cut(s)	238
BspACI	CCGC	3 cut(s)	225, 267, 503
BspCNI	CTCAG	3 cut(s)	432, 731, 1021
BspEI	TCCGGA	1 cut(s)	148
BspHI	TCATGA	1 cut(s)	55
BspLI	GGNNCC	5 cut(s)	70, 191, 229, 293, 804
BspPI	GGATC	4 cut(s)	541, 797, 810, 992
BspT107I	GGYRCC	1 cut(s)	68
BspTNI	GGTCTC	1 cut(s)	280
BsrDI	GCAATG	1 cut(s)	1089
BsrFI	RCCGGY	1 cut(s)	828
BsrI	ACTGG	6 cut(s)	394, 458, 474, 550, 935, 1001
BssAI	RCCGGY	1 cut(s)	828
BssECI	CCNNGG	4 cut(s)	129, 193, 238, 398
BssMI	GATC	4 cut(s)	546, 802, 840, 997
BssNI	GRCGYC	2 cut(s)	69, 305
BssT1I	CCWWGG	1 cut(s)	238
Bst4CI	ACNGT	2 cut(s)	194, 431
Bst6I	CTCTTC	3 cut(s)	206, 498, 978
BstACI	GRCGYC	2 cut(s)	69, 305
BstC8I	GCNNGC	1 cut(s)	183
BstDEI	CTNAG	5 cut(s)	138, 440, 638, 718, 1029
BstDSI	CCRYGG	3 cut(s)	129, 193, 238
BstF5I	GGATG	4 cut(s)	747, 865, 939, 1097
BstH2I	RGCGCY	1 cut(s)	72
BstHHI	GCGC	1 cut(s)	71
BstKTI	GATC	4 cut(s)	549, 805, 843, 1000
BstMAI	GTCTC	2 cut(s)	280, 921
BstMBI	GATC	4 cut(s)	546, 802, 840, 997
BstMWI	GCNNNNNNNGC	1 cut(s)	403
BstNSI	RCATGY	1 cut(s)	185
BstSCI	CCNGG	2 cut(s)	697, 798
BstSFI	CTRYAG	2 cut(s)	160, 412
BstV1I	GCAGC	1 cut(s)	517
BstX2I	RGATCY	3 cut(s)	546, 802, 997
BstXI	CCANNNNNNTGG	1 cut(s)	481
BstYI	RGATCY	3 cut(s)	546, 802, 997
BtgI	CCRYGG	3 cut(s)	129, 193, 238
BtsCI	GGATG	4 cut(s)	747, 865, 939, 1097
BtsIMutI	CAGTG	3 cut(s)	387, 437, 726
Cac8I	GCNNGC	1 cut(s)	183
CaiI	CAGNNNCTG	1 cut(s)	464
CciI	TCATGA	1 cut(s)	55
CfoI	GCGC	1 cut(s)	71
Cfr10I	RCCGGY	1 cut(s)	828
CseI	GACGC	2 cut(s)	294, 1095
Csp6I	GTAC	2 cut(s)	461, 745
CviAII	CATG	7 cut(s)	56, 73, 182, 239, 349, 479, 739
CviQI	GTAC	2 cut(s)	461, 745
DdeI	CTNAG	5 cut(s)	138, 440, 638, 718, 1029
DinI	GGCGCC	1 cut(s)	70
DpnI	GATC	4 cut(s)	548, 804, 842, 999
DpnII	GATC	4 cut(s)	546, 802, 840, 997
DraIII	CACNNNGTG	1 cut(s)	443
Eam1104I	CTCTTC	3 cut(s)	206, 498, 978
EarI	CTCTTC	3 cut(s)	206, 498, 978
EciI	GGCGGA	1 cut(s)	240
Ecl136II	GAGCTC	1 cut(s)	61
Eco130I	CCWWGG	1 cut(s)	238
Eco24I	GRGCYC	1 cut(s)	63
Eco31I	GGTCTC	1 cut(s)	280
Eco53kI	GAGCTC	1 cut(s)	61
EcoICRI	GAGCTC	1 cut(s)	61
EcoT14I	CCWWGG	1 cut(s)	238
EcoT38I	GRGCYC	1 cut(s)	63
EgeI	GGCGCC	1 cut(s)	70
EheI	GGCGCC	1 cut(s)	70
ErhI	CCWWGG	1 cut(s)	238
FaeI	CATG	7 cut(s)	59, 76, 185, 242, 352, 482, 742
FalI	AAGNNNNNCTT	2 cut(s)	759, 791
FaqI	GGGAC	1 cut(s)	1074
FatI	CATG	7 cut(s)	55, 72, 181, 238, 348, 478, 738
FauI	CCCGC	1 cut(s)	510
FbaI	TGATCA	1 cut(s)	840
Fnu4HI	GCNGC	2 cut(s)	268, 506
FokI	GGATG	4 cut(s)	734, 872, 946, 1084
FriOI	GRGCYC	1 cut(s)	63
Fsp4HI	GCNGC	2 cut(s)	268, 506
FspBI	CTAG	3 cut(s)	123, 612, 878
GlaI	GCGC	1 cut(s)	70
GluI	GCNGC	2 cut(s)	268, 506
HaeII	RGCGCY	1 cut(s)	72
HapII	CCGG	5 cut(s)	149, 302, 698, 800, 829
HgaI	GACGC	2 cut(s)	294, 1095
HhaI	GCGC	1 cut(s)	71
Hin1I	GRCGYC	2 cut(s)	69, 305
Hin1II	CATG	7 cut(s)	59, 76, 185, 242, 352, 482, 742
Hin6I	GCGC	1 cut(s)	69
HinP1I	GCGC	1 cut(s)	69
HincII	GTYRAC	2 cut(s)	203, 309
HindII	GTYRAC	2 cut(s)	203, 309
HinfI	GANTC	2 cut(s)	152, 446
HpaII	CCGG	5 cut(s)	149, 302, 698, 800, 829
HphI	GGTGA	5 cut(s)	661, 700, 818, 850, 947
Hpy166II	GTNNAC	5 cut(s)	203, 309, 367, 387, 1048
Hpy188I	TCNGA	8 cut(s)	21, 235, 291, 402, 523, 588, 621, 1073
Hpy188III	TCNNGA	4 cut(s)	56, 149, 878, 1015
Hpy8I	GTNNAC	5 cut(s)	203, 309, 367, 387, 1048
HpyAV	CCTTC	4 cut(s)	296, 931, 1028, 1036
HpyCH4III	ACNGT	2 cut(s)	194, 431
HpyCH4IV	ACGT	3 cut(s)	40, 78, 205
HpyCH4V	TGCA	5 cut(s)	35, 185, 540, 557, 1025
HpyF10VI	GCNNNNNNNGC	1 cut(s)	403
HpyF3I	CTNAG	5 cut(s)	138, 440, 638, 718, 1029
HpySE526I	ACGT	3 cut(s)	40, 78, 205
Hsp92I	GRCGYC	2 cut(s)	69, 305
Hsp92II	CATG	7 cut(s)	59, 76, 185, 242, 352, 482, 742
HspAI	GCGC	1 cut(s)	69
KasI	GGCGCC	1 cut(s)	68
Kpn2I	TCCGGA	1 cut(s)	148
Ksp22I	TGATCA	1 cut(s)	840
Kzo9I	GATC	4 cut(s)	546, 802, 840, 997
LmnI	GCTCC	3 cut(s)	227, 634, 1099
Lsp1109I	GCAGC	1 cut(s)	517
MaeI	CTAG	3 cut(s)	123, 612, 878
MaeII	ACGT	3 cut(s)	40, 78, 205
MaeIII	GTNAC	6 cut(s)	245, 431, 443, 649, 688, 1003
MalI	GATC	4 cut(s)	548, 804, 842, 999
MboI	GATC	4 cut(s)	546, 802, 840, 997
MboII	GAAGA	5 cut(s)	121, 223, 485, 929, 995
MflI	RGATCY	3 cut(s)	546, 802, 997
MhlI	GDGCHC	2 cut(s)	63, 427
MluCI	AATT	5 cut(s)	13, 296, 733, 754, 1077
Mly113I	GGCGCC	1 cut(s)	69
MlyI	GAGTC	2 cut(s)	161, 440
MmeI	TCCRAC	2 cut(s)	258, 333
MroI	TCCGGA	1 cut(s)	148
MroXI	GAANNNNTTC	1 cut(s)	407
MseI	TTAA	1 cut(s)	683
MslI	CAYNNNNRTG	2 cut(s)	620, 1102
MspI	CCGG	5 cut(s)	149, 302, 698, 800, 829
MspR9I	CCNGG	2 cut(s)	699, 800
MwoI	GCNNNNNNNGC	1 cut(s)	403
NarI	GGCGCC	1 cut(s)	69
NciI	CCSGG	2 cut(s)	699, 800
NcoI	CCATGG	1 cut(s)	238
NdeII	GATC	4 cut(s)	546, 802, 840, 997
NlaIII	CATG	7 cut(s)	59, 76, 185, 242, 352, 482, 742
NlaIV	GGNNCC	5 cut(s)	70, 191, 229, 293, 804
NmuCI	GTSAC	3 cut(s)	443, 649, 688
NspI	RCATGY	1 cut(s)	185
PaeI	GCATGC	1 cut(s)	185
PagI	TCATGA	1 cut(s)	55
PdmI	GAANNNNTTC	1 cut(s)	407
PfoI	TCCNGGA	1 cut(s)	798
PkrI	GCNGC	2 cut(s)	269, 507
PleI	GAGTC	2 cut(s)	160, 440
PluTI	GGCGCC	1 cut(s)	72
PpsI	GAGTC	2 cut(s)	160, 440
Psp124BI	GAGCTC	1 cut(s)	63
PspN4I	GGNNCC	5 cut(s)	70, 191, 229, 293, 804
PstNI	CAGNNNCTG	1 cut(s)	464
PsuI	RGATCY	3 cut(s)	546, 802, 997
RsaI	GTAC	2 cut(s)	462, 746
RsaNI	GTAC	2 cut(s)	461, 745
RseI	CAYNNNNRTG	2 cut(s)	620, 1102
SacI	GAGCTC	1 cut(s)	63
SaqAI	TTAA	1 cut(s)	683
SatI	GCNGC	2 cut(s)	268, 506
Sau3AI	GATC	4 cut(s)	546, 802, 840, 997
SchI	GAGTC	2 cut(s)	161, 440
ScrFI	CCNGG	2 cut(s)	699, 800
SduI	GDGCHC	2 cut(s)	63, 427
SfcI	CTRYAG	2 cut(s)	160, 412
SfoI	GGCGCC	1 cut(s)	70
SgrAI	CRCCGGYG	1 cut(s)	828
SmiMI	CAYNNNNRTG	2 cut(s)	620, 1102
SmlI	CTYRAG	1 cut(s)	1015
SmoI	CTYRAG	1 cut(s)	1015
SphI	GCATGC	1 cut(s)	185
Sse9I	AATT	5 cut(s)	13, 296, 733, 754, 1077
SsiI	CCGC	3 cut(s)	225, 267, 503
SspDI	GGCGCC	1 cut(s)	68
SspMI	CTAG	3 cut(s)	123, 612, 878
SstI	GAGCTC	1 cut(s)	63
StyD4I	CCNGG	2 cut(s)	697, 798
StyI	CCWWGG	1 cut(s)	238
TaaI	ACNGT	2 cut(s)	194, 431
TaiI	ACGT	3 cut(s)	43, 81, 208
TaqI	TCGA	2 cut(s)	915, 990
TasI	AATT	5 cut(s)	13, 296, 733, 754, 1077
TatI	WGTACW	1 cut(s)	744
TauI	GCSGC	1 cut(s)	270
Tru1I	TTAA	1 cut(s)	683
Tru9I	TTAA	1 cut(s)	683
TscAI	CASTG	3 cut(s)	394, 444, 726
TseFI	GTSAC	3 cut(s)	443, 649, 688
TseI	GCWGC	1 cut(s)	505
Tsp45I	GTSAC	3 cut(s)	443, 649, 688
TspDTI	ATGAA	6 cut(s)	44, 89, 485, 540, 755, 950
TspGWI	ACGGA	1 cut(s)	202
TspRI	CASTG	3 cut(s)	394, 444, 726
XbaI	TCTAGA	1 cut(s)	877
XceI	RCATGY	1 cut(s)	185
XmnI	GAANNNNTTC	1 cut(s)	407
XspI	CTAG	3 cut(s)	123, 612, 878

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.